Wall clock time and date at job start Tue Mar 31 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.50703 * 109.47185 * 120.00026 * 2 1 3 5 5 H 1.08005 * 119.99525 * 119.99801 * 4 2 1 6 6 C 1.37876 * 120.00249 * 300.00088 * 4 2 1 7 7 N 1.31515 * 119.99465 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00169 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47029 * 89.99871 * 8 6 4 10 10 H 1.48499 * 109.47284 * 209.99909 * 8 6 4 11 11 H 1.48499 * 109.47291 * 330.00030 * 8 6 4 12 12 N 1.46503 * 109.47036 * 240.00136 * 2 1 3 13 13 C 1.34775 * 120.00069 * 84.99916 * 12 2 1 14 14 O 1.21594 * 119.99767 * 359.97438 * 13 12 2 15 15 N 1.34777 * 120.00065 * 179.97438 * 13 12 2 16 16 C 1.40192 * 120.00049 * 180.02562 * 15 13 12 17 17 C 1.40402 * 125.97032 * 359.97438 * 16 15 13 18 18 C 1.35245 * 107.86627 * 179.70432 * 17 16 15 19 19 N 1.34964 * 107.85965 * 0.26430 * 18 17 16 20 20 C 1.46495 * 125.98003 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.46877 * 125.00357 * 20 19 18 22 22 F 1.39896 * 109.47193 * 65.00730 * 21 20 19 23 23 F 1.39909 * 109.47199 * 185.00628 * 21 20 19 24 24 N 1.31206 * 125.97560 * 180.17721 * 16 15 13 25 25 H 1.09001 * 109.46524 * 299.99708 * 1 2 3 26 26 H 1.08993 * 109.46948 * 59.99784 * 1 2 3 27 27 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99349 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99875 * 265.00221 * 12 2 1 30 30 H 0.97005 * 119.99878 * 0.02562 * 15 13 12 31 31 H 1.08002 * 126.07048 * 359.97438 * 17 16 15 32 32 H 1.08000 * 126.07435 * 180.26799 * 18 17 16 33 33 H 1.08994 * 109.47532 * 245.00383 * 20 19 18 34 34 H 1.08999 * 109.47116 * 5.01096 * 20 19 18 35 35 H 1.08995 * 109.47425 * 305.00221 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8574 1.1614 -2.4118 15 7 2.5968 -0.6534 -3.4575 16 6 2.7311 0.0461 -4.6650 17 6 2.4348 1.4032 -4.8693 18 6 2.7031 1.6965 -6.1620 19 7 3.1467 0.5700 -6.7585 20 6 3.5506 0.4405 -8.1607 21 6 4.9710 -0.1235 -8.2322 22 9 4.9818 -1.4262 -7.7222 23 9 5.3996 -0.1406 -9.5639 24 7 3.1523 -0.4539 -5.8026 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7096 1.1617 3.4844 29 1 2.2490 -1.6318 -1.1527 30 1 2.8275 -1.5946 -3.4139 31 1 2.0630 2.0919 -4.1250 32 1 2.5836 2.6608 -6.6333 33 1 2.8658 -0.2335 -8.6754 34 1 3.5242 1.4198 -8.6384 35 1 5.6408 0.5028 -7.6431 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161737607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:55 Heat of formation + Delta-G solvation = -65.727085 kcal Electronic energy + Delta-G solvation = -22210.467768 eV Core-core repulsion = 18301.721934 eV Total energy + Delta-G solvation = -3908.745834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.96455 -47.97979 -42.35865 -40.83616 -37.07099 -35.97625 -34.54727 -33.82226 -31.21231 -30.64507 -28.92376 -27.30940 -24.74019 -23.73359 -22.48034 -21.70527 -21.32920 -19.61342 -18.83241 -18.55946 -18.15962 -17.83401 -17.59315 -16.97755 -16.57349 -16.29719 -15.87862 -15.41675 -15.12958 -14.93488 -14.47403 -14.38882 -14.32869 -14.07192 -13.89763 -13.71751 -13.22982 -12.97073 -12.89734 -12.73935 -12.40217 -12.23397 -12.10553 -11.74499 -11.67312 -11.08528 -11.04630 -10.58169 -9.96145 -9.78756 -9.16193 -8.15794 -6.32501 0.78265 1.01714 1.47852 1.47986 1.58656 1.66505 1.90161 2.41958 2.45706 2.70645 3.15103 3.24070 3.35935 3.42646 3.71898 4.02041 4.09548 4.39952 4.47393 4.61067 4.78924 4.87683 4.96715 5.12001 5.20134 5.38643 5.60372 5.66242 5.78820 5.85878 6.06236 6.09890 6.12921 6.68260 6.75999 7.21546 7.35578 7.63954 8.90756 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.038947 B = 0.002882 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.759045 B = 9712.214334 C =10164.564276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.290 3.710 3 H 0.005 0.995 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.261 1.261 12 N -0.711 5.711 13 C 0.704 3.296 14 O -0.609 6.609 15 N -0.643 5.643 16 C 0.308 3.692 17 C -0.300 4.300 18 C 0.096 3.904 19 N -0.378 5.378 20 C 0.094 3.906 21 C 0.251 3.749 22 F -0.212 7.212 23 F -0.202 7.202 24 N -0.342 5.342 25 H 0.069 0.931 26 H 0.014 0.986 27 H 0.039 0.961 28 H 0.266 0.734 29 H 0.404 0.596 30 H 0.420 0.580 31 H 0.150 0.850 32 H 0.231 0.769 33 H 0.111 0.889 34 H 0.177 0.823 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.961 -0.582 -22.092 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.187 3.813 3 H 0.023 0.977 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.185 1.185 12 N -0.364 5.364 13 C 0.403 3.597 14 O -0.488 6.488 15 N -0.296 5.296 16 C 0.051 3.949 17 C -0.331 4.331 18 C -0.048 4.048 19 N -0.162 5.162 20 C -0.027 4.027 21 C 0.197 3.803 22 F -0.194 7.194 23 F -0.183 7.183 24 N -0.173 5.173 25 H 0.088 0.912 26 H 0.033 0.967 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.239 0.761 30 H 0.258 0.742 31 H 0.167 0.833 32 H 0.247 0.753 33 H 0.129 0.871 34 H 0.195 0.805 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.045 -0.483 -22.646 23.444 hybrid contribution 0.058 -0.597 1.475 1.593 sum 6.103 -1.080 -21.171 22.059 Atomic orbital electron populations 1.21935 0.98261 0.99500 0.99747 1.18298 0.90967 0.91832 0.80228 0.97708 1.21537 1.32666 1.13684 0.90684 0.90838 1.25758 0.94860 0.95612 1.02176 1.70048 1.36864 1.23836 1.24654 0.85341 0.77745 0.79142 0.78067 1.20415 1.20945 1.18511 1.45452 1.68777 1.14057 1.08094 1.15965 0.78385 0.84848 0.80488 1.90787 1.57852 1.15750 1.84433 1.41601 1.68403 1.14031 1.05534 1.19204 0.97522 0.92057 0.86083 1.21957 1.16738 0.95748 0.98663 1.23184 0.96267 0.93377 0.92022 1.48019 1.53169 1.06312 1.08740 1.22957 0.94124 1.08424 0.77238 1.22315 0.98362 0.81631 0.77996 1.93026 1.97611 1.41639 1.87116 1.93009 1.91142 1.96762 1.37388 1.77443 1.30911 1.12158 0.96751 0.91247 0.96715 0.94183 0.92488 0.76115 0.74231 0.83275 0.75292 0.87108 0.80549 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.81 9.26 71.98 0.67 -6.15 16 2 C 0.29 14.90 2.56 44.25 0.11 15.01 16 3 H 0.01 0.30 7.58 -2.39 -0.02 0.28 16 4 C -0.55 -28.65 8.73 25.60 0.22 -28.43 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -51.87 11.32 21.45 0.24 -51.63 16 8 Si 0.97 41.64 29.54 68.60 2.03 43.66 16 9 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 12 N -0.71 -29.62 5.07 -461.39 -2.34 -31.96 16 13 C 0.70 29.18 8.50 179.05 1.52 30.70 16 14 O -0.61 -29.63 13.13 -4.01 -0.05 -29.68 16 15 N -0.64 -21.48 5.45 -321.23 -1.75 -23.23 16 16 C 0.31 10.12 8.11 133.32 1.08 11.20 16 17 C -0.30 -9.30 9.61 22.11 0.21 -9.08 16 18 C 0.10 1.84 11.44 83.52 0.96 2.80 16 19 N -0.38 -7.41 3.68 -348.12 -1.28 -8.69 16 20 C 0.09 0.94 6.72 86.38 0.58 1.52 16 21 C 0.25 3.36 5.51 71.98 0.40 3.75 16 22 F -0.21 -4.77 16.57 44.97 0.75 -4.02 16 23 F -0.20 -2.79 17.34 44.97 0.78 -2.01 16 24 N -0.34 -9.83 11.75 -54.44 -0.64 -10.47 16 25 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 26 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.40 14.07 8.55 -92.70 -0.79 13.27 16 30 H 0.42 11.41 8.84 -92.70 -0.82 10.59 16 31 H 0.15 5.55 5.91 -2.91 -0.02 5.53 16 32 H 0.23 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.18 0.00 8.07 -2.39 -0.02 -0.02 16 35 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -74.09 312.59 3.47 -70.62 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.45 Total: 24.80 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 6.20 Total: 22.62 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.77 Total: -125.99 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.05 Total: -29.68 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 1.52 Total: -6.03 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -74.09 3.47 -70.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161737607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.892 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds