Wall clock time and date at job start Tue Mar 31 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48502 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47123 * 299.99953 * 3 2 1 6 6 H 1.48493 * 109.47590 * 59.99720 * 3 2 1 7 7 C 1.40053 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99639 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00360 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99599 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00424 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00214 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47096 * 179.97438 * 12 11 9 14 14 C 1.38282 * 119.92334 * 90.00245 * 13 12 11 15 15 C 1.38115 * 120.06825 * 179.97438 * 14 13 12 16 16 C 1.38875 * 119.92992 * 359.97438 * 15 14 13 17 17 N 1.39921 * 120.06787 * 179.97438 * 16 15 14 18 18 C 1.34771 * 120.00232 * 35.07970 * 17 16 15 19 19 O 1.21288 * 119.99940 * 355.08689 * 18 17 16 20 20 C 1.50703 * 120.00510 * 175.09680 * 18 17 16 21 21 C 1.52998 * 117.49670 * 248.74615 * 20 18 17 22 22 C 1.52997 * 117.50329 * 180.08273 * 20 18 17 23 23 C 1.38873 * 119.85737 * 0.27507 * 16 15 14 24 24 C 1.38109 * 119.92802 * 359.47181 * 23 16 15 25 25 H 0.96999 * 119.99955 * 359.97438 * 1 2 3 26 26 H 0.97003 * 119.99565 * 359.97438 * 11 9 7 27 27 H 1.09004 * 109.46779 * 60.00320 * 12 11 9 28 28 H 1.08998 * 109.47288 * 299.99968 * 12 11 9 29 29 H 1.08003 * 119.97029 * 359.97438 * 14 13 12 30 30 H 1.07997 * 120.03540 * 179.97438 * 15 14 13 31 31 H 0.97001 * 120.00045 * 214.79562 * 17 16 15 32 32 H 1.09002 * 115.54583 * 34.40695 * 20 18 17 33 33 H 1.08997 * 117.50072 * 359.97438 * 21 20 18 34 34 H 1.08999 * 117.49675 * 145.01850 * 21 20 18 35 35 H 1.08999 * 117.50153 * 214.97677 * 22 20 18 36 36 H 1.09005 * 117.49747 * 359.97389 * 22 20 18 37 37 H 1.08001 * 120.03190 * 179.70287 * 23 16 15 38 38 H 1.08003 * 119.96491 * 180.25501 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8820 2.3965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6478 0.0005 12 6 1.2165 -4.9165 0.0011 13 6 2.1958 -6.0619 0.0004 14 6 2.6450 -6.5862 1.1985 15 6 3.5421 -7.6363 1.2013 16 6 3.9926 -8.1660 -0.0008 17 7 4.9019 -9.2295 -0.0014 18 6 4.8312 -10.1770 0.9544 19 8 4.0385 -10.0617 1.8652 20 6 5.7373 -11.3796 0.8919 21 6 5.0922 -12.7356 0.5988 22 6 5.6075 -12.4207 2.0055 23 6 3.5436 -7.6337 -1.2024 24 6 2.6425 -6.5871 -1.1983 25 1 -0.4850 0.8400 0.0004 26 1 2.9190 -3.6477 0.0002 27 1 0.5896 -4.9744 -0.8887 28 1 0.5902 -4.9740 0.8913 29 1 2.2939 -6.1742 2.1331 30 1 3.8928 -8.0452 2.1373 31 1 5.5805 -9.2871 -0.6921 32 1 6.7327 -11.1976 0.4865 33 1 4.0125 -12.7580 0.4517 34 1 5.6634 -13.4459 0.0011 35 1 6.5173 -12.9240 2.3325 36 1 4.8670 -12.2356 2.7836 37 1 3.8958 -8.0403 -2.1389 38 1 2.2897 -6.1754 -2.1324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219653778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:45 Heat of formation + Delta-G solvation = -24.115628 kcal Electronic energy + Delta-G solvation = -21129.492292 eV Core-core repulsion = 17744.487645 eV Total energy + Delta-G solvation = -3385.004647 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82097 -39.01406 -37.22708 -36.51411 -35.13354 -33.16463 -32.24128 -30.84951 -29.94511 -26.86747 -25.50467 -23.86262 -22.92615 -22.85176 -21.16095 -20.30930 -19.61661 -18.02135 -17.56347 -17.33016 -15.74301 -15.53105 -15.36500 -15.17352 -14.97592 -14.38364 -14.13958 -13.96253 -13.43917 -13.42912 -12.97242 -12.92088 -12.63741 -12.23974 -12.00512 -11.46999 -11.31825 -11.15841 -11.07631 -11.03025 -10.95062 -10.81779 -10.44082 -10.36026 -10.17605 -9.97024 -8.83938 -8.81850 -8.16210 -7.53180 -7.46743 -6.15886 -4.61234 1.24609 1.52286 2.19246 2.71438 3.14739 3.22801 3.27465 3.39775 3.83765 4.14769 4.22312 4.33741 4.41510 4.61537 4.63628 4.94644 5.06297 5.09271 5.14629 5.27746 5.29088 5.47553 5.52264 5.54886 5.58409 5.69010 5.81888 6.09378 6.26802 6.29340 6.35784 6.49893 6.53502 6.93036 7.09652 7.14697 7.46183 7.85031 7.96670 8.12083 8.36446 9.05152 9.57218 10.62671 10.81311 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.041523 B = 0.002521 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.163752 B =11104.303402 C =11249.996664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.170 3.830 13 C -0.097 4.097 14 C -0.087 4.087 15 C -0.121 4.121 16 C 0.131 3.869 17 N -0.668 5.668 18 C 0.540 3.460 19 O -0.519 6.519 20 C -0.196 4.196 21 C -0.152 4.152 22 C -0.146 4.146 23 C -0.145 4.145 24 C -0.087 4.087 25 H 0.267 0.733 26 H 0.381 0.619 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.410 0.590 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.195 -22.512 -1.327 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.464 6.464 11 N -0.418 5.418 12 C 0.046 3.954 13 C -0.098 4.098 14 C -0.106 4.106 15 C -0.141 4.141 16 C 0.038 3.962 17 N -0.312 5.312 18 C 0.328 3.672 19 O -0.394 6.394 20 C -0.217 4.217 21 C -0.189 4.189 22 C -0.184 4.184 23 C -0.166 4.166 24 C -0.106 4.106 25 H 0.078 0.922 26 H 0.212 0.788 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.154 0.846 31 H 0.245 0.755 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.540 -22.374 -0.662 25.657 hybrid contribution 1.373 0.778 -0.482 1.651 sum 13.914 -21.596 -1.144 25.715 Atomic orbital electron populations 1.70033 1.07049 1.27118 1.35525 1.25718 0.94622 1.00297 0.92653 0.86317 0.80480 0.81769 0.78180 1.18798 1.20192 1.20177 1.20913 0.93602 0.89313 1.54267 0.91393 1.18258 0.87212 0.82393 0.76324 1.90602 1.14110 1.86769 1.54926 1.46199 1.08610 1.04250 1.82765 1.19797 0.92109 0.82076 1.01457 1.20246 0.98842 0.97721 0.92997 1.21068 0.96265 0.95089 0.98167 1.21216 0.99247 0.96150 0.97515 1.17711 0.94355 0.89811 0.94336 1.43370 1.33643 1.23452 1.30727 1.19818 0.83200 0.82753 0.81425 1.90723 1.38006 1.77356 1.33334 1.22165 1.00809 0.89726 1.09045 1.22984 1.01570 0.94729 0.99611 1.22999 1.03926 0.99127 0.92323 1.20818 1.00102 0.99572 0.96066 1.20921 0.96162 0.95318 0.98169 0.92184 0.78772 0.92515 0.92497 0.85465 0.84623 0.75461 0.85597 0.88098 0.87580 0.87720 0.87219 0.85931 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.34 11.83 55.55 0.66 -22.68 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 16 4 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.57 9.54 -35.63 -0.34 -15.91 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.55 16.04 7.75 -12.99 -0.10 15.94 16 10 O -0.58 -19.14 15.02 5.20 0.08 -19.07 16 11 N -0.76 -17.47 5.54 -62.91 -0.35 -17.82 16 12 C 0.17 3.39 5.80 -5.20 -0.03 3.36 16 13 C -0.10 -1.56 5.25 -104.59 -0.55 -2.11 16 14 C -0.09 -1.33 9.69 -39.61 -0.38 -1.71 16 15 C -0.12 -1.75 8.70 -39.39 -0.34 -2.09 16 16 C 0.13 1.64 6.30 -83.69 -0.53 1.12 16 17 N -0.67 -6.31 5.34 -9.86 -0.05 -6.36 16 18 C 0.54 5.67 7.46 -10.99 -0.08 5.59 16 19 O -0.52 -7.50 13.69 5.55 0.08 -7.42 16 20 C -0.20 -1.32 6.19 -91.77 -0.57 -1.88 16 21 C -0.15 -0.87 10.24 -26.69 -0.27 -1.14 16 22 C -0.15 -0.94 10.05 -26.69 -0.27 -1.21 16 23 C -0.15 -1.73 9.97 -39.39 -0.39 -2.12 16 24 C -0.09 -1.21 9.69 -39.61 -0.38 -1.59 16 25 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 26 H 0.38 7.84 8.44 -40.82 -0.34 7.50 16 27 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 28 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 29 H 0.13 1.90 8.06 -52.48 -0.42 1.47 16 30 H 0.14 2.02 6.21 -52.49 -0.33 1.69 16 31 H 0.41 2.41 8.82 -40.82 -0.36 2.05 16 32 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -36.94 334.61 -8.68 -45.63 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.77 Total: 8.78 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -4.34 Total: -1.42 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.26 Total: -46.86 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: 0.15 Total: -26.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.94 -8.68 -45.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219653778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.510 kcal (2) G-P(sol) polarization free energy of solvation -36.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds