Wall clock time and date at job start Tue Mar 31 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48502 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47123 * 299.99953 * 3 2 1 6 6 H 1.48493 * 109.47590 * 59.99720 * 3 2 1 7 7 C 1.40053 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99639 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00360 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99599 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00424 * 179.97438 * 9 7 2 12 12 C 1.46496 * 120.00214 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47096 * 179.97438 * 12 11 9 14 14 C 1.38282 * 119.92334 * 90.00245 * 13 12 11 15 15 C 1.38115 * 120.06825 * 179.97438 * 14 13 12 16 16 C 1.38875 * 119.92992 * 359.97438 * 15 14 13 17 17 N 1.39921 * 120.06787 * 179.97438 * 16 15 14 18 18 C 1.34771 * 120.00232 * 35.07970 * 17 16 15 19 19 O 1.21288 * 119.99940 * 355.08689 * 18 17 16 20 20 C 1.50703 * 120.00510 * 175.09680 * 18 17 16 21 21 C 1.52998 * 117.49670 * 248.74615 * 20 18 17 22 22 C 1.52997 * 117.50329 * 180.08273 * 20 18 17 23 23 C 1.38873 * 119.85737 * 0.27507 * 16 15 14 24 24 C 1.38109 * 119.92802 * 359.47181 * 23 16 15 25 25 H 0.96999 * 119.99955 * 359.97438 * 1 2 3 26 26 H 0.97003 * 119.99565 * 359.97438 * 11 9 7 27 27 H 1.09004 * 109.46779 * 60.00320 * 12 11 9 28 28 H 1.08998 * 109.47288 * 299.99968 * 12 11 9 29 29 H 1.08003 * 119.97029 * 359.97438 * 14 13 12 30 30 H 1.07997 * 120.03540 * 179.97438 * 15 14 13 31 31 H 0.97001 * 120.00045 * 214.79562 * 17 16 15 32 32 H 1.09002 * 115.54583 * 34.40695 * 20 18 17 33 33 H 1.08997 * 117.50072 * 359.97438 * 21 20 18 34 34 H 1.08999 * 117.49675 * 145.01850 * 21 20 18 35 35 H 1.08999 * 117.50153 * 214.97677 * 22 20 18 36 36 H 1.09005 * 117.49747 * 359.97389 * 22 20 18 37 37 H 1.08001 * 120.03190 * 179.70287 * 23 16 15 38 38 H 1.08003 * 119.96491 * 180.25501 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8820 2.3965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6478 0.0005 12 6 1.2165 -4.9165 0.0011 13 6 2.1958 -6.0619 0.0004 14 6 2.6450 -6.5862 1.1985 15 6 3.5421 -7.6363 1.2013 16 6 3.9926 -8.1660 -0.0008 17 7 4.9019 -9.2295 -0.0014 18 6 4.8312 -10.1770 0.9544 19 8 4.0385 -10.0617 1.8652 20 6 5.7373 -11.3796 0.8919 21 6 5.0922 -12.7356 0.5988 22 6 5.6075 -12.4207 2.0055 23 6 3.5436 -7.6337 -1.2024 24 6 2.6425 -6.5871 -1.1983 25 1 -0.4850 0.8400 0.0004 26 1 2.9190 -3.6477 0.0002 27 1 0.5896 -4.9744 -0.8887 28 1 0.5902 -4.9740 0.8913 29 1 2.2939 -6.1742 2.1331 30 1 3.8928 -8.0452 2.1373 31 1 5.5805 -9.2871 -0.6921 32 1 6.7327 -11.1976 0.4865 33 1 4.0125 -12.7580 0.4517 34 1 5.6634 -13.4459 0.0011 35 1 6.5173 -12.9240 2.3325 36 1 4.8670 -12.2356 2.7836 37 1 3.8958 -8.0403 -2.1389 38 1 2.2897 -6.1754 -2.1324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219653778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:44 Heat of formation + Delta-G solvation = -50.785102 kcal Electronic energy + Delta-G solvation = -21130.648767 eV Core-core repulsion = 17744.487645 eV Total energy + Delta-G solvation = -3386.161122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.72145 -40.16091 -39.14311 -37.26158 -36.26530 -34.96238 -34.33866 -31.96044 -31.38356 -28.71531 -26.89033 -25.00950 -23.98370 -23.32562 -22.36167 -21.66548 -21.12616 -19.37312 -18.80409 -18.41223 -17.51778 -16.73504 -16.55024 -16.37744 -16.04378 -15.75081 -15.67647 -15.23257 -14.87518 -14.66420 -14.32141 -14.27811 -13.74257 -13.59655 -13.28542 -13.10272 -12.74266 -12.69610 -12.50199 -12.41615 -12.20341 -11.97065 -11.55614 -11.50306 -11.37809 -10.95124 -10.91263 -9.94042 -9.92709 -9.50615 -9.12920 -8.28895 -6.86219 0.13102 0.40981 1.37890 1.40748 1.40964 1.59209 1.94104 2.25203 2.46431 2.66469 2.90417 3.35604 3.58186 3.60668 3.80611 3.83576 3.89443 3.95221 4.03852 4.19129 4.33579 4.42195 4.56857 4.74693 4.75182 4.77794 4.90079 5.03250 5.06840 5.20743 5.22528 5.27782 5.32009 5.44369 5.68120 5.86936 5.99132 6.19403 6.26066 6.38293 6.86188 7.07829 7.53373 8.47844 8.66777 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.041523 B = 0.002521 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.163752 B =11104.303402 C =11249.996664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.026 3.974 3 Si 1.001 2.999 4 H -0.247 1.247 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.537 3.463 10 O -0.633 6.633 11 N -0.748 5.748 12 C 0.177 3.823 13 C -0.113 4.113 14 C -0.094 4.094 15 C -0.133 4.133 16 C 0.139 3.861 17 N -0.654 5.654 18 C 0.533 3.467 19 O -0.566 6.566 20 C -0.195 4.195 21 C -0.140 4.140 22 C -0.155 4.155 23 C -0.131 4.131 24 C -0.086 4.086 25 H 0.275 0.725 26 H 0.394 0.606 27 H 0.046 0.954 28 H 0.037 0.963 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.431 0.569 32 H 0.161 0.839 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.164 0.836 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.703 -23.508 -2.878 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.170 1.170 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.608 4.608 8 H 0.106 0.894 9 C 0.341 3.659 10 O -0.521 6.521 11 N -0.403 5.403 12 C 0.053 3.947 13 C -0.114 4.114 14 C -0.113 4.113 15 C -0.153 4.153 16 C 0.045 3.955 17 N -0.300 5.300 18 C 0.323 3.677 19 O -0.444 6.444 20 C -0.215 4.215 21 C -0.178 4.178 22 C -0.193 4.193 23 C -0.150 4.150 24 C -0.105 4.105 25 H 0.085 0.915 26 H 0.227 0.773 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.270 0.730 32 H 0.179 0.821 33 H 0.103 0.897 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.101 0.899 37 H 0.181 0.819 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 16.125 -23.431 -2.240 28.532 hybrid contribution 0.295 0.925 0.019 0.971 sum 16.420 -22.506 -2.221 27.947 Atomic orbital electron populations 1.70199 1.09582 1.28940 1.36476 1.27024 0.95569 1.05073 0.91198 0.84929 0.79297 0.75205 0.78563 1.16969 1.19184 1.19386 1.21444 0.94715 0.89947 1.54646 0.89441 1.18673 0.86845 0.84296 0.76077 1.90553 1.16244 1.87929 1.57369 1.45870 1.09184 1.04118 1.81099 1.19724 0.92768 0.82290 0.99937 1.19859 0.99675 0.97491 0.94405 1.20997 0.96876 0.95742 0.97718 1.21189 0.99637 0.96197 0.98313 1.17845 0.93992 0.89849 0.93842 1.43331 1.33362 1.22169 1.31132 1.20603 0.82936 0.83603 0.80524 1.90715 1.40101 1.78416 1.35182 1.22258 1.01456 0.88134 1.09675 1.23081 1.01069 0.94383 0.99238 1.23063 1.04473 0.99595 0.92130 1.21110 0.98499 0.98106 0.97336 1.21068 0.96257 0.95686 0.97476 0.91524 0.77257 0.93559 0.94506 0.86307 0.85482 0.72956 0.82100 0.89732 0.84560 0.85232 0.89917 0.81877 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.31 11.83 21.84 0.26 -51.05 16 2 C 0.03 1.49 5.50 85.31 0.47 1.96 16 3 Si 1.00 41.52 29.56 68.60 2.03 43.55 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.57 -33.09 9.54 24.83 0.24 -32.85 16 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 9 C 0.54 32.18 7.75 86.36 0.67 32.85 16 10 O -0.63 -43.82 15.02 -4.32 -0.06 -43.88 16 11 N -0.75 -35.37 5.54 -471.15 -2.61 -37.98 16 12 C 0.18 7.40 5.80 85.63 0.50 7.89 16 13 C -0.11 -3.69 5.25 -19.84 -0.10 -3.80 16 14 C -0.09 -2.98 9.69 22.25 0.22 -2.76 16 15 C -0.13 -3.85 8.70 22.39 0.19 -3.65 16 16 C 0.14 3.21 6.30 38.15 0.24 3.45 16 17 N -0.65 -10.55 5.34 -303.51 -1.62 -12.17 16 18 C 0.53 10.33 7.46 87.66 0.65 10.98 16 19 O -0.57 -16.44 13.69 -3.06 -0.04 -16.48 16 20 C -0.19 -2.04 6.19 -11.54 -0.07 -2.11 16 21 C -0.14 -1.22 10.24 30.62 0.31 -0.91 16 22 C -0.16 -1.71 10.05 30.62 0.31 -1.40 16 23 C -0.13 -2.71 9.97 22.39 0.22 -2.49 16 24 C -0.09 -2.27 9.69 22.25 0.22 -2.06 16 25 H 0.27 15.43 8.29 -92.71 -0.77 14.67 16 26 H 0.39 16.40 8.44 -92.71 -0.78 15.62 16 27 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 28 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 29 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 30 H 0.13 3.90 6.21 -2.91 -0.02 3.88 16 31 H 0.43 3.29 8.82 -92.71 -0.82 2.47 16 32 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 1.38 7.67 -2.38 -0.02 1.36 16 37 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -85.03 334.61 1.51 -83.51 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.49 Total: 29.39 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 4.06 Total: 5.12 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.97 Total: -101.21 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -0.11 Total: -60.36 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -85.03 1.51 -83.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219653778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.728 kcal (2) G-P(sol) polarization free energy of solvation -85.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds