Wall clock time and date at job start Tue Mar 31 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86804 * 119.99466 * 2 1 4 4 H 1.48502 * 109.47083 * 239.99400 * 3 2 1 5 5 H 1.48492 * 109.47304 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46856 * 120.00537 * 3 2 1 7 7 C 1.40221 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99862 * 197.86840 * 7 2 1 9 9 C 1.41111 * 120.00068 * 17.86758 * 7 2 1 10 10 C 1.40889 * 120.10224 * 204.63602 * 9 7 2 11 11 C 1.36308 * 119.89156 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10964 * 0.02785 * 11 10 9 13 13 C 1.47642 * 119.89879 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99699 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99894 * 179.97438 * 13 12 11 16 16 N 1.40099 * 119.99924 * 179.97438 * 15 13 12 17 17 C 1.34778 * 120.00135 * 179.72365 * 16 15 13 18 18 O 1.21286 * 120.00115 * 0.27172 * 17 16 15 19 19 C 1.50697 * 120.00274 * 180.27874 * 17 16 15 20 20 C 1.53780 * 113.61287 * 279.13535 * 19 17 16 21 21 C 1.53957 * 87.02323 * 220.04667 * 20 19 17 22 22 C 1.53783 * 113.61590 * 181.52822 * 19 17 16 23 23 C 1.40020 * 120.20479 * 0.22343 * 12 11 10 24 24 C 1.36315 * 120.10764 * 359.49230 * 23 12 11 25 25 H 0.96994 * 120.00286 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.05335 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.95011 * 179.97438 * 11 10 9 28 28 H 0.97006 * 120.00424 * 359.97438 * 15 13 12 29 29 H 0.96997 * 120.00283 * 359.97438 * 16 15 13 30 30 H 1.09003 * 112.85157 * 50.32985 * 19 17 16 31 31 H 1.09004 * 113.61357 * 334.56890 * 20 19 17 32 32 H 1.09004 * 113.61815 * 105.46802 * 20 19 17 33 33 H 1.08993 * 113.53641 * 270.81318 * 21 20 19 34 34 H 1.08999 * 113.66709 * 139.92818 * 21 20 19 35 35 H 1.08996 * 113.61678 * 254.52453 * 22 19 17 36 36 H 1.08993 * 113.61403 * 25.34602 * 22 19 17 37 37 H 1.08004 * 119.94432 * 179.72125 * 23 12 11 38 38 H 1.08001 * 120.05725 * 180.24791 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6179 0.0000 4 1 3.0942 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0942 1.6965 1.2125 7 6 2.0077 -1.2143 -0.0005 8 1 3.0486 -1.2369 0.2864 9 6 1.3532 -2.4068 -0.3760 10 6 1.8269 -3.6494 0.0892 11 6 1.1918 -4.7987 -0.2766 12 6 0.0707 -4.7457 -1.1137 13 6 -0.6133 -5.9935 -1.5075 14 8 -0.2027 -7.0648 -1.1052 15 7 -1.6929 -5.9448 -2.3128 16 7 -2.3417 -7.1288 -2.6869 17 6 -3.4246 -7.0798 -3.4877 18 8 -3.8346 -6.0110 -3.8886 19 6 -4.1263 -8.3529 -3.8851 20 6 -3.4438 -9.0959 -5.0457 21 6 -4.8566 -9.3882 -5.5833 22 6 -5.3191 -8.1300 -4.8297 23 6 -0.4006 -3.5135 -1.5829 24 6 0.2245 -2.3584 -1.2178 25 1 -0.4850 0.8400 -0.0004 26 1 2.6919 -3.6913 0.7347 27 1 1.5543 -5.7518 0.0792 28 1 -2.0208 -5.0900 -2.6335 29 1 -2.0137 -7.9836 -2.3666 30 1 -4.3575 -8.9924 -3.0331 31 1 -2.8556 -8.4465 -5.6941 32 1 -2.9011 -9.9883 -4.7339 33 1 -5.2870 -10.3118 -5.1964 34 1 -4.9387 -9.3030 -6.6668 35 1 -6.2881 -8.2436 -4.3437 36 1 -5.2453 -7.2153 -5.4178 37 1 -1.2630 -3.4779 -2.2321 38 1 -0.1421 -1.4081 -1.5769 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270403338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:39 Heat of formation + Delta-G solvation = -11.830646 kcal Electronic energy + Delta-G solvation = -21472.162875 eV Core-core repulsion = 18087.690945 eV Total energy + Delta-G solvation = -3384.471930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.48447 -39.13206 -37.63264 -37.04231 -34.90327 -33.96052 -31.56488 -29.83641 -29.50890 -26.91246 -25.91255 -25.65193 -22.34942 -21.55329 -20.93934 -20.37024 -19.37904 -17.86329 -17.58744 -17.33881 -16.19068 -15.71437 -15.51834 -14.98153 -14.94465 -14.11854 -14.06366 -13.93964 -13.29780 -13.10408 -12.85480 -12.71855 -12.35904 -12.17868 -12.03490 -11.51307 -11.47259 -11.30931 -11.11592 -10.94053 -10.82303 -10.69518 -10.68430 -10.15740 -9.96892 -9.62955 -9.41436 -9.23222 -8.09196 -7.78829 -7.60521 -7.10011 -4.67555 2.07679 2.18165 2.52509 2.89003 2.91928 2.95467 2.97856 3.68730 3.74663 4.17569 4.24298 4.31981 4.47876 4.52160 4.66229 5.00167 5.26464 5.40357 5.49315 5.51536 5.60220 5.69536 5.77305 5.81971 5.98997 6.14532 6.23358 6.70752 6.75514 6.88061 6.99581 7.03285 7.08322 7.36546 7.58803 7.69668 7.78801 7.99190 8.05218 8.16078 8.32614 8.55574 8.67411 8.92805 9.81586 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.031411 B = 0.002955 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.202747 B = 9471.821806 C =10179.189303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.437 4.437 8 H 0.087 0.913 9 C 0.130 3.870 10 C -0.239 4.239 11 C -0.016 4.016 12 C -0.282 4.282 13 C 0.575 3.425 14 O -0.577 6.577 15 N -0.538 5.538 16 N -0.517 5.517 17 C 0.516 3.484 18 O -0.545 6.545 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.141 4.141 22 C -0.115 4.115 23 C -0.062 4.062 24 C -0.176 4.176 25 H 0.289 0.711 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.429 0.571 29 H 0.428 0.572 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 -10.271 -7.231 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.464 4.464 8 H 0.105 0.895 9 C 0.126 3.874 10 C -0.258 4.258 11 C -0.035 4.035 12 C -0.288 4.288 13 C 0.371 3.629 14 O -0.458 6.458 15 N -0.288 5.288 16 N -0.263 5.263 17 C 0.302 3.698 18 O -0.421 6.421 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.179 4.179 22 C -0.153 4.153 23 C -0.081 4.081 24 C -0.195 4.195 25 H 0.100 0.900 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.272 0.728 29 H 0.269 0.731 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.233 -10.090 -7.213 14.358 hybrid contribution 0.258 0.789 0.182 0.850 sum -6.974 -9.301 -7.031 13.586 Atomic orbital electron populations 1.69728 1.07965 1.30430 1.30792 1.26142 0.94848 1.02040 0.91881 0.86226 0.80202 0.79271 0.80411 1.18385 1.19974 1.18588 1.19871 0.98463 0.91180 1.36908 0.89541 1.17807 0.90303 0.92229 0.87036 1.20706 1.04685 0.92514 1.07923 1.20310 0.92534 0.97303 0.93355 1.18576 1.04870 0.89849 1.15518 1.18845 0.77443 0.90574 0.76086 1.90642 1.66498 1.31359 1.57347 1.45195 1.29927 1.00935 1.52746 1.44879 1.28267 1.03046 1.50061 1.20761 0.79273 0.91877 0.77927 1.90711 1.65448 1.30870 1.55115 1.22757 0.98597 0.94501 0.99304 1.22913 0.97192 1.00180 0.96107 1.22861 0.96060 0.98291 1.00675 1.22817 0.96408 0.99161 0.96929 1.20503 0.97373 0.92592 0.97635 1.20981 0.99826 0.96936 1.01793 0.89961 0.88141 0.87909 0.72795 0.73091 0.86513 0.89445 0.90358 0.89796 0.90838 0.90816 0.88526 0.89193 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.18 10.95 55.56 0.61 -17.57 16 2 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 3 Si 0.92 16.99 29.60 -169.99 -5.03 11.96 16 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.44 -10.65 9.04 -37.75 -0.34 -10.99 16 8 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.25 5.58 -106.80 -0.60 2.65 16 10 C -0.24 -5.64 9.73 -39.27 -0.38 -6.02 16 11 C -0.02 -0.36 9.52 -39.61 -0.38 -0.74 16 12 C -0.28 -6.38 5.89 -104.73 -0.62 -7.00 16 13 C 0.57 12.13 7.88 -12.42 -0.10 12.03 16 14 O -0.58 -13.05 16.16 5.29 0.09 -12.96 16 15 N -0.54 -9.82 6.21 30.48 0.19 -9.63 16 16 N -0.52 -7.84 6.26 31.22 0.20 -7.65 16 17 C 0.52 7.26 7.47 -10.99 -0.08 7.18 16 18 O -0.55 -9.57 15.75 5.55 0.09 -9.48 16 19 C -0.13 -1.23 4.14 -90.96 -0.38 -1.60 16 20 C -0.13 -1.01 7.64 -25.83 -0.20 -1.21 16 21 C -0.14 -0.97 8.09 -25.82 -0.21 -1.18 16 22 C -0.12 -1.03 7.40 -25.91 -0.19 -1.22 16 23 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 24 C -0.18 -4.29 8.64 -39.27 -0.34 -4.63 16 25 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 26 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 27 H 0.10 2.25 7.63 -52.48 -0.40 1.85 16 28 H 0.43 7.76 6.00 -182.59 -1.10 6.66 16 29 H 0.43 5.81 8.00 -182.60 -1.46 4.35 16 30 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.80 8.09 -51.93 -0.42 0.37 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 1.03 7.45 -51.93 -0.39 0.65 16 37 H 0.09 1.78 6.37 -52.48 -0.33 1.44 16 38 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -28.97 326.55 -9.72 -38.69 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -6.51 Total: 14.61 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -4.27 Total: -12.89 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.99 Total: -34.84 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.17 Total: -22.45 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.97 -9.72 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270403338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.863 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds