Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86804 * 119.99466 * 2 1 4 4 H 1.48502 * 109.47083 * 239.99400 * 3 2 1 5 5 H 1.48492 * 109.47304 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46856 * 120.00537 * 3 2 1 7 7 C 1.40221 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99862 * 197.86840 * 7 2 1 9 9 C 1.41111 * 120.00068 * 17.86758 * 7 2 1 10 10 C 1.40889 * 120.10224 * 204.63602 * 9 7 2 11 11 C 1.36308 * 119.89156 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10964 * 0.02785 * 11 10 9 13 13 C 1.47642 * 119.89879 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99699 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99894 * 179.97438 * 13 12 11 16 16 N 1.40099 * 119.99924 * 179.97438 * 15 13 12 17 17 C 1.34778 * 120.00135 * 179.72365 * 16 15 13 18 18 O 1.21286 * 120.00115 * 0.27172 * 17 16 15 19 19 C 1.50697 * 120.00274 * 180.27874 * 17 16 15 20 20 C 1.53780 * 113.61287 * 279.13535 * 19 17 16 21 21 C 1.53957 * 87.02323 * 220.04667 * 20 19 17 22 22 C 1.53783 * 113.61590 * 181.52822 * 19 17 16 23 23 C 1.40020 * 120.20479 * 0.22343 * 12 11 10 24 24 C 1.36315 * 120.10764 * 359.49230 * 23 12 11 25 25 H 0.96994 * 120.00286 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.05335 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.95011 * 179.97438 * 11 10 9 28 28 H 0.97006 * 120.00424 * 359.97438 * 15 13 12 29 29 H 0.96997 * 120.00283 * 359.97438 * 16 15 13 30 30 H 1.09003 * 112.85157 * 50.32985 * 19 17 16 31 31 H 1.09004 * 113.61357 * 334.56890 * 20 19 17 32 32 H 1.09004 * 113.61815 * 105.46802 * 20 19 17 33 33 H 1.08993 * 113.53641 * 270.81318 * 21 20 19 34 34 H 1.08999 * 113.66709 * 139.92818 * 21 20 19 35 35 H 1.08996 * 113.61678 * 254.52453 * 22 19 17 36 36 H 1.08993 * 113.61403 * 25.34602 * 22 19 17 37 37 H 1.08004 * 119.94432 * 179.72125 * 23 12 11 38 38 H 1.08001 * 120.05725 * 180.24791 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6179 0.0000 4 1 3.0942 1.6965 -1.2124 5 1 1.2753 2.7465 0.0006 6 1 3.0942 1.6965 1.2125 7 6 2.0077 -1.2143 -0.0005 8 1 3.0486 -1.2369 0.2864 9 6 1.3532 -2.4068 -0.3760 10 6 1.8269 -3.6494 0.0892 11 6 1.1918 -4.7987 -0.2766 12 6 0.0707 -4.7457 -1.1137 13 6 -0.6133 -5.9935 -1.5075 14 8 -0.2027 -7.0648 -1.1052 15 7 -1.6929 -5.9448 -2.3128 16 7 -2.3417 -7.1288 -2.6869 17 6 -3.4246 -7.0798 -3.4877 18 8 -3.8346 -6.0110 -3.8886 19 6 -4.1263 -8.3529 -3.8851 20 6 -3.4438 -9.0959 -5.0457 21 6 -4.8566 -9.3882 -5.5833 22 6 -5.3191 -8.1300 -4.8297 23 6 -0.4006 -3.5135 -1.5829 24 6 0.2245 -2.3584 -1.2178 25 1 -0.4850 0.8400 -0.0004 26 1 2.6919 -3.6913 0.7347 27 1 1.5543 -5.7518 0.0792 28 1 -2.0208 -5.0900 -2.6335 29 1 -2.0137 -7.9836 -2.3666 30 1 -4.3575 -8.9924 -3.0331 31 1 -2.8556 -8.4465 -5.6941 32 1 -2.9011 -9.9883 -4.7339 33 1 -5.2870 -10.3118 -5.1964 34 1 -4.9387 -9.3030 -6.6668 35 1 -6.2881 -8.2436 -4.3437 36 1 -5.2453 -7.2153 -5.4178 37 1 -1.2630 -3.4779 -2.2321 38 1 -0.1421 -1.4081 -1.5769 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270403338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = -28.954307 kcal Electronic energy + Delta-G solvation = -21472.905413 eV Core-core repulsion = 18087.690945 eV Total energy + Delta-G solvation = -3385.214468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66573 -40.60511 -39.06848 -38.35264 -36.34672 -35.73124 -33.10928 -31.50508 -31.31212 -28.12817 -27.12716 -26.52811 -23.99212 -22.99062 -22.51722 -21.80971 -20.29255 -19.41712 -19.11693 -18.74213 -17.58770 -17.17676 -16.69527 -16.26920 -16.09253 -15.79439 -15.58183 -15.34044 -15.10222 -14.54409 -13.97614 -13.90162 -13.76370 -13.41500 -13.29577 -13.08727 -12.87795 -12.72254 -12.44470 -12.36202 -12.19804 -11.83358 -11.44812 -11.42245 -11.33960 -11.22975 -11.12850 -10.82801 -9.69474 -9.58649 -9.32105 -8.83163 -6.52428 0.32539 0.85565 1.11921 1.32405 1.39242 1.46402 1.52306 2.03606 2.15324 2.72019 3.04994 3.45651 3.60798 3.64229 3.75134 3.90810 4.05409 4.22768 4.23969 4.41387 4.67993 4.79759 4.86809 4.89822 4.98465 5.03915 5.09716 5.11551 5.15640 5.23470 5.49274 5.52396 5.61088 5.64302 5.81710 5.95109 5.97304 6.17469 6.49415 6.53776 6.72530 6.83489 6.86788 7.37846 8.11440 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.031411 B = 0.002955 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.202747 B = 9471.821806 C =10179.189303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.466 4.466 8 H 0.091 0.909 9 C 0.103 3.897 10 C -0.250 4.250 11 C -0.022 4.022 12 C -0.291 4.291 13 C 0.578 3.422 14 O -0.593 6.593 15 N -0.535 5.535 16 N -0.514 5.514 17 C 0.515 3.485 18 O -0.582 6.582 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.057 4.057 24 C -0.197 4.197 25 H 0.298 0.702 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.429 0.571 29 H 0.436 0.564 30 H 0.147 0.853 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -11.277 -7.690 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.492 4.492 8 H 0.109 0.891 9 C 0.100 3.900 10 C -0.270 4.270 11 C -0.041 4.041 12 C -0.297 4.297 13 C 0.373 3.627 14 O -0.476 6.476 15 N -0.282 5.282 16 N -0.261 5.261 17 C 0.304 3.696 18 O -0.461 6.461 19 C -0.148 4.148 20 C -0.163 4.163 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.076 4.076 24 C -0.217 4.217 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.273 0.727 29 H 0.279 0.721 30 H 0.165 0.835 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.852 -11.125 -7.682 15.634 hybrid contribution 0.348 1.023 0.282 1.117 sum -7.504 -10.102 -7.399 14.598 Atomic orbital electron populations 1.69761 1.09380 1.31884 1.30834 1.26997 0.95532 1.05066 0.90781 0.85129 0.78821 0.74757 0.80435 1.18170 1.18968 1.17973 1.20171 0.98940 0.92068 1.38054 0.89083 1.18152 0.90996 0.93171 0.87712 1.20882 1.05288 0.92441 1.08342 1.20479 0.92735 0.97490 0.93434 1.18820 1.04926 0.90733 1.15232 1.18498 0.78024 0.89692 0.76473 1.90625 1.67186 1.31597 1.58162 1.44951 1.29228 1.02451 1.51602 1.45159 1.28447 1.02056 1.50474 1.21790 0.78335 0.93063 0.76428 1.90697 1.66302 1.32799 1.56284 1.23027 0.98502 0.92499 1.00767 1.22947 0.98006 1.00321 0.95033 1.22845 0.94667 0.97987 1.00884 1.22857 0.96821 0.99354 0.97029 1.20682 0.97595 0.92014 0.97297 1.20994 1.00644 0.97200 1.02826 0.89067 0.87072 0.87008 0.72742 0.72081 0.83539 0.91036 0.88303 0.87465 0.90334 0.89643 0.90982 0.87014 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.11 10.95 21.87 0.24 -37.87 16 2 C 0.04 1.65 5.14 85.35 0.44 2.09 16 3 Si 0.99 34.39 29.60 68.60 2.03 36.42 16 4 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 5 H -0.27 -8.74 7.11 99.48 0.71 -8.03 16 6 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 7 C -0.47 -23.06 9.04 23.46 0.21 -22.85 16 8 H 0.09 4.26 7.91 -2.91 -0.02 4.23 16 9 C 0.10 5.28 5.58 -21.28 -0.12 5.17 16 10 C -0.25 -12.03 9.73 22.47 0.22 -11.81 16 11 C -0.02 -1.02 9.52 22.25 0.21 -0.81 16 12 C -0.29 -13.22 5.89 -19.93 -0.12 -13.34 16 13 C 0.58 24.16 7.88 86.73 0.68 24.85 16 14 O -0.59 -26.35 16.16 -3.99 -0.06 -26.41 16 15 N -0.53 -19.22 6.21 -175.74 -1.09 -20.31 16 16 N -0.51 -14.99 6.26 -173.53 -1.09 -16.08 16 17 C 0.52 13.97 7.47 87.66 0.65 14.62 16 18 O -0.58 -20.38 15.75 -3.05 -0.05 -20.43 16 19 C -0.13 -2.10 4.14 -11.01 -0.05 -2.14 16 20 C -0.13 -1.69 7.64 31.18 0.24 -1.45 16 21 C -0.13 -1.35 8.09 31.18 0.25 -1.10 16 22 C -0.12 -1.96 7.40 31.12 0.23 -1.73 16 23 C -0.06 -2.57 9.47 22.25 0.21 -2.36 16 24 C -0.20 -9.86 8.64 22.47 0.19 -9.67 16 25 H 0.30 12.76 8.29 -92.71 -0.77 11.99 16 26 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 27 H 0.11 4.90 7.63 -2.91 -0.02 4.87 16 28 H 0.43 15.43 6.00 -213.31 -1.28 14.15 16 29 H 0.44 11.12 8.00 -213.32 -1.71 9.41 16 30 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.21 8.09 -2.38 -0.02 1.19 16 32 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.52 7.45 -2.39 -0.02 1.50 16 37 H 0.11 4.43 6.37 -2.91 -0.02 4.41 16 38 H 0.11 5.74 6.16 -2.91 -0.02 5.72 16 Total: -1.00 -63.09 326.55 1.37 -61.72 By element: Atomic # 1 Polarization: 45.38 SS G_CDS: -1.87 Total: 43.50 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 3.26 Total: -20.53 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -1.94 Total: -74.27 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -0.11 Total: -46.84 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Total: -63.09 1.37 -61.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270403338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.769 kcal (2) G-P(sol) polarization free energy of solvation -63.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds