Wall clock time and date at job start Tue Mar 31 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48501 * 109.46918 * 239.99988 * 3 2 1 5 5 H 1.48495 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47086 * 120.00181 * 3 2 1 7 7 C 1.37872 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47262 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47263 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00130 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99975 * 179.97438 * 11 10 9 14 14 C 1.46026 * 120.68541 * 179.97438 * 13 11 10 15 15 C 1.52537 * 111.02866 * 222.98247 * 14 13 11 16 16 N 1.46291 * 110.81155 * 44.94817 * 15 14 13 17 17 C 1.35495 * 120.37727 * 284.24343 * 16 15 14 18 18 O 1.21586 * 120.02837 * 185.49827 * 17 16 15 19 19 C 1.47417 * 119.94301 * 5.47754 * 17 16 15 20 20 C 1.39285 * 121.39978 * 227.91629 * 19 17 16 21 21 C 1.37957 * 119.63293 * 181.36331 * 20 19 17 22 22 C 1.38567 * 120.40062 * 0.09967 * 21 20 19 23 23 C 1.38151 * 120.53369 * 359.30870 * 22 21 20 24 24 C 1.38534 * 119.84983 * 0.07722 * 23 22 21 25 25 H 0.96998 * 120.00193 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46981 * 59.99817 * 9 7 2 27 27 H 1.08998 * 109.47191 * 299.99901 * 9 7 2 28 28 H 1.09004 * 109.47025 * 59.99538 * 10 9 7 29 29 H 1.09006 * 109.46788 * 299.99776 * 10 9 7 30 30 H 1.09000 * 109.16530 * 343.38149 * 14 13 11 31 31 H 1.08993 * 109.16570 * 102.58059 * 14 13 11 32 32 H 1.09005 * 109.21106 * 165.29181 * 15 14 13 33 33 H 1.08999 * 109.21045 * 284.64876 * 15 14 13 34 34 H 0.97006 * 119.81220 * 104.26461 * 16 15 14 35 35 H 1.07998 * 120.18313 * 1.34108 * 20 19 17 36 36 H 1.08005 * 119.80228 * 180.02562 * 21 20 19 37 37 H 1.07994 * 119.73545 * 179.33194 * 22 21 20 38 38 H 1.07999 * 120.07654 * 180.08798 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4918 -4.9671 0.0033 12 8 0.2790 -4.9672 0.0024 13 7 2.1657 -6.1343 0.0037 14 6 1.4508 -7.4076 0.0048 15 6 2.0915 -8.3942 0.9758 16 7 2.3997 -7.7441 2.2495 17 6 3.4634 -6.9113 2.3540 18 8 3.7733 -6.4531 3.4367 19 6 4.2448 -6.5617 1.1539 20 6 5.6362 -6.6256 1.1498 21 6 6.3324 -6.2631 0.0153 22 6 5.6559 -5.8351 -1.1157 23 6 4.2756 -5.7787 -1.1287 24 6 3.5597 -6.1510 -0.0026 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8720 -3.6035 0.8927 29 1 2.8719 -3.6051 -0.8874 30 1 0.4155 -7.2364 0.2996 31 1 1.4707 -7.8300 -0.9998 32 1 1.4038 -9.2214 1.1524 33 1 3.0123 -8.7806 0.5390 34 1 1.8395 -7.9104 3.0238 35 1 6.1671 -6.9569 2.0301 36 1 7.4113 -6.3121 0.0090 37 1 6.2121 -5.5436 -1.9943 38 1 3.7558 -5.4453 -2.0147 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291663277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:44 Heat of formation + Delta-G solvation = -40.402265 kcal Electronic energy + Delta-G solvation = -23010.465263 eV Core-core repulsion = 19624.754375 eV Total energy + Delta-G solvation = -3385.710888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23001 -39.12498 -38.20514 -36.47057 -34.34564 -33.50083 -31.33521 -31.28419 -30.44662 -28.67011 -25.83733 -24.56223 -23.25506 -22.99415 -21.07802 -20.54455 -19.24554 -17.67438 -17.23278 -17.05838 -16.41336 -16.09048 -15.82766 -15.12910 -14.73551 -14.48002 -14.39271 -14.18407 -13.85456 -13.51146 -13.31863 -13.01110 -12.74868 -12.33634 -12.15960 -11.99476 -11.75711 -11.43502 -11.14130 -10.89901 -10.61190 -10.20569 -9.98276 -9.86001 -9.49361 -9.39904 -9.16781 -9.14098 -8.99918 -8.51842 -8.30866 -5.95190 -3.99494 0.75118 1.10395 2.57751 2.88097 2.98345 3.11718 3.36197 3.40523 3.42888 3.50999 4.32388 4.47183 4.55525 4.68012 4.72234 4.82675 5.04297 5.08069 5.14867 5.25080 5.39853 5.42795 5.49592 5.70665 5.76460 6.01644 6.10154 6.18633 6.21650 6.24824 6.43762 6.58731 6.74435 6.83769 6.97816 7.54273 7.73346 7.83168 8.03840 8.05698 8.35022 8.51975 9.07560 9.64001 11.15854 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.004971 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.063009 B = 5631.611628 C = 6216.106310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.127 4.127 11 C 0.521 3.479 12 O -0.516 6.516 13 N -0.586 5.586 14 C 0.087 3.913 15 C 0.099 3.901 16 N -0.723 5.723 17 C 0.571 3.429 18 O -0.527 6.527 19 C -0.138 4.138 20 C -0.059 4.059 21 C -0.126 4.126 22 C -0.084 4.084 23 C -0.120 4.120 24 C 0.177 3.823 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.405 0.595 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.757 -20.491 -2.326 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.167 4.167 11 C 0.313 3.687 12 O -0.389 6.389 13 N -0.318 5.318 14 C -0.036 4.036 15 C -0.027 4.027 16 N -0.377 5.377 17 C 0.359 3.641 18 O -0.403 6.403 19 C -0.143 4.143 20 C -0.079 4.079 21 C -0.144 4.144 22 C -0.103 4.103 23 C -0.139 4.139 24 C 0.085 3.915 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.242 0.758 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.117 -20.063 -1.912 22.551 hybrid contribution 0.166 0.821 0.204 0.862 sum 10.283 -19.243 -1.708 21.885 Atomic orbital electron populations 1.69984 1.06061 1.26723 1.50144 1.25009 0.94825 0.99211 0.95226 0.86642 0.79563 0.83089 0.78612 1.20211 1.21250 1.20182 1.21150 0.92919 0.90874 1.51514 0.92619 1.18911 0.93053 0.89370 0.98547 1.21940 1.00755 0.91269 1.02743 1.21785 0.88388 0.84972 0.73534 1.90672 1.14053 1.86727 1.47411 1.45503 1.03487 1.06884 1.75935 1.21882 0.98551 0.83562 0.99609 1.21722 1.01606 0.95075 0.84271 1.45879 1.30444 1.47955 1.13391 1.18405 0.79972 0.77548 0.88219 1.90847 1.68637 1.52341 1.28507 1.20089 0.94550 1.06705 0.92983 1.20976 0.91424 0.96945 0.98507 1.21165 1.00346 0.99973 0.92940 1.21261 0.93628 0.96798 0.98566 1.21303 0.94438 1.00660 0.97524 1.17584 0.83238 0.98768 0.91937 0.92884 0.95776 0.95886 0.90183 0.89940 0.88338 0.90535 0.88119 0.90493 0.75827 0.84903 0.85036 0.84934 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.78 13.29 55.43 0.74 -27.04 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.53 -15.30 9.11 -34.44 -0.31 -15.61 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.04 1.07 4.26 -27.88 -0.12 0.95 16 10 C -0.13 -2.77 4.40 -27.89 -0.12 -2.89 16 11 C 0.52 10.44 7.63 -10.99 -0.08 10.35 16 12 O -0.52 -12.04 15.44 5.56 0.09 -11.96 16 13 N -0.59 -8.81 2.32 -113.83 -0.26 -9.08 16 14 C 0.09 0.98 6.31 -4.54 -0.03 0.95 16 15 C 0.10 0.82 6.30 -4.39 -0.03 0.80 16 16 N -0.72 -8.26 5.37 -61.59 -0.33 -8.59 16 17 C 0.57 8.52 7.18 -12.20 -0.09 8.43 16 18 O -0.53 -9.81 17.88 5.29 0.09 -9.72 16 19 C -0.14 -1.85 4.90 -104.90 -0.51 -2.36 16 20 C -0.06 -0.65 9.79 -39.30 -0.38 -1.04 16 21 C -0.13 -1.14 10.03 -39.56 -0.40 -1.53 16 22 C -0.08 -0.78 10.03 -39.49 -0.40 -1.18 16 23 C -0.12 -1.38 8.69 -39.50 -0.34 -1.72 16 24 C 0.18 2.38 4.08 -83.43 -0.34 2.04 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.75 8.12 -51.93 -0.42 1.33 16 29 H 0.08 1.62 7.05 -51.93 -0.37 1.26 16 30 H 0.10 1.26 7.10 -51.93 -0.37 0.89 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.57 7.57 -51.93 -0.39 0.18 16 34 H 0.41 4.15 8.93 -40.82 -0.36 3.78 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.14 1.49 7.98 -52.49 -0.42 1.07 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -37.23 322.77 -7.92 -45.15 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.83 Total: 0.51 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -3.26 Total: -1.17 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.14 Total: -44.71 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.18 Total: -21.68 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -37.23 -7.92 -45.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291663277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.743 kcal (2) G-P(sol) polarization free energy of solvation -37.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds