Wall clock time and date at job start Tue Mar 31 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48501 * 109.46918 * 239.99988 * 3 2 1 5 5 H 1.48495 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47086 * 120.00181 * 3 2 1 7 7 C 1.37872 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99918 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47262 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47263 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00130 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99975 * 179.97438 * 11 10 9 14 14 C 1.46026 * 120.68541 * 179.97438 * 13 11 10 15 15 C 1.52537 * 111.02866 * 222.98247 * 14 13 11 16 16 N 1.46291 * 110.81155 * 44.94817 * 15 14 13 17 17 C 1.35495 * 120.37727 * 284.24343 * 16 15 14 18 18 O 1.21586 * 120.02837 * 185.49827 * 17 16 15 19 19 C 1.47417 * 119.94301 * 5.47754 * 17 16 15 20 20 C 1.39285 * 121.39978 * 227.91629 * 19 17 16 21 21 C 1.37957 * 119.63293 * 181.36331 * 20 19 17 22 22 C 1.38567 * 120.40062 * 0.09967 * 21 20 19 23 23 C 1.38151 * 120.53369 * 359.30870 * 22 21 20 24 24 C 1.38534 * 119.84983 * 0.07722 * 23 22 21 25 25 H 0.96998 * 120.00193 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46981 * 59.99817 * 9 7 2 27 27 H 1.08998 * 109.47191 * 299.99901 * 9 7 2 28 28 H 1.09004 * 109.47025 * 59.99538 * 10 9 7 29 29 H 1.09006 * 109.46788 * 299.99776 * 10 9 7 30 30 H 1.09000 * 109.16530 * 343.38149 * 14 13 11 31 31 H 1.08993 * 109.16570 * 102.58059 * 14 13 11 32 32 H 1.09005 * 109.21106 * 165.29181 * 15 14 13 33 33 H 1.08999 * 109.21045 * 284.64876 * 15 14 13 34 34 H 0.97006 * 119.81220 * 104.26461 * 16 15 14 35 35 H 1.07998 * 120.18313 * 1.34108 * 20 19 17 36 36 H 1.08005 * 119.80228 * 180.02562 * 21 20 19 37 37 H 1.07994 * 119.73545 * 179.33194 * 22 21 20 38 38 H 1.07999 * 120.07654 * 180.08798 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4918 -4.9671 0.0033 12 8 0.2790 -4.9672 0.0024 13 7 2.1657 -6.1343 0.0037 14 6 1.4508 -7.4076 0.0048 15 6 2.0915 -8.3942 0.9758 16 7 2.3997 -7.7441 2.2495 17 6 3.4634 -6.9113 2.3540 18 8 3.7733 -6.4531 3.4367 19 6 4.2448 -6.5617 1.1539 20 6 5.6362 -6.6256 1.1498 21 6 6.3324 -6.2631 0.0153 22 6 5.6559 -5.8351 -1.1157 23 6 4.2756 -5.7787 -1.1287 24 6 3.5597 -6.1510 -0.0026 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5574 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8720 -3.6035 0.8927 29 1 2.8719 -3.6051 -0.8874 30 1 0.4155 -7.2364 0.2996 31 1 1.4707 -7.8300 -0.9998 32 1 1.4038 -9.2214 1.1524 33 1 3.0123 -8.7806 0.5390 34 1 1.8395 -7.9104 3.0238 35 1 6.1671 -6.9569 2.0301 36 1 7.4113 -6.3121 0.0090 37 1 6.2121 -5.5436 -1.9943 38 1 3.7558 -5.4453 -2.0147 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291663277.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:43 Heat of formation + Delta-G solvation = -67.172428 kcal Electronic energy + Delta-G solvation = -23011.626104 eV Core-core repulsion = 19624.754375 eV Total energy + Delta-G solvation = -3386.871730 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.33703 -40.49891 -39.22925 -37.61297 -35.67004 -35.46924 -33.15865 -32.20937 -31.55333 -29.80280 -27.74192 -25.57953 -24.55269 -24.09691 -22.70499 -21.51228 -20.54437 -19.00442 -18.67124 -18.02970 -17.81672 -17.50878 -17.15883 -16.47888 -16.17035 -16.11089 -15.54571 -15.12093 -15.05509 -14.79405 -14.43515 -14.30455 -14.05145 -13.77644 -13.60027 -13.35106 -12.85995 -12.80131 -12.64145 -12.54593 -12.25926 -12.03825 -11.73917 -11.40957 -11.32600 -11.05722 -10.61101 -10.55748 -10.14492 -10.00281 -9.55662 -8.21551 -6.36241 -0.15444 0.24513 1.39419 1.40472 1.44804 1.51696 1.52481 1.73748 2.18372 2.40485 2.64730 3.11123 3.39090 3.51204 3.85314 3.93343 3.99127 4.13548 4.31639 4.33219 4.36777 4.37861 4.49126 4.54349 4.67050 4.74743 4.88300 4.93632 5.18730 5.24386 5.40056 5.44712 5.45941 5.52109 5.74211 5.77389 5.82163 5.99644 6.12154 6.23724 6.79085 6.97905 7.01062 7.33890 8.91015 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.004971 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.063009 B = 5631.611628 C = 6216.106310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.974 3.026 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.047 3.953 10 C -0.113 4.113 11 C 0.521 3.479 12 O -0.564 6.564 13 N -0.572 5.572 14 C 0.078 3.922 15 C 0.103 3.897 16 N -0.718 5.718 17 C 0.561 3.439 18 O -0.579 6.579 19 C -0.154 4.154 20 C -0.064 4.064 21 C -0.110 4.110 22 C -0.073 4.073 23 C -0.126 4.126 24 C 0.150 3.850 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.022 1.022 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.409 0.591 35 H 0.141 0.859 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.058 -21.334 -3.685 25.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.090 0.910 9 C 0.010 3.990 10 C -0.153 4.153 11 C 0.312 3.688 12 O -0.441 6.441 13 N -0.302 5.302 14 C -0.043 4.043 15 C -0.021 4.021 16 N -0.369 5.369 17 C 0.349 3.651 18 O -0.460 6.460 19 C -0.159 4.159 20 C -0.083 4.083 21 C -0.128 4.128 22 C -0.091 4.091 23 C -0.146 4.146 24 C 0.059 3.941 25 H 0.073 0.927 26 H 0.009 0.991 27 H -0.004 1.004 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.160 0.840 33 H 0.114 0.886 34 H 0.246 0.754 35 H 0.159 0.841 36 H 0.186 0.814 37 H 0.184 0.816 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.452 -20.990 -3.300 25.148 hybrid contribution -0.814 0.974 0.592 1.401 sum 12.638 -20.016 -2.708 23.826 Atomic orbital electron populations 1.70159 1.08255 1.28021 1.51084 1.26119 0.95758 1.03877 0.94343 0.85372 0.78143 0.77238 0.79525 1.18205 1.20934 1.19130 1.21600 0.93799 0.91572 1.51452 0.91048 1.18663 0.93412 0.92187 0.94781 1.21604 0.99328 0.90617 1.03711 1.21324 0.87628 0.86098 0.73750 1.90649 1.15743 1.87587 1.50171 1.45267 1.04609 1.06558 1.73782 1.22236 0.97404 0.82481 1.02219 1.21979 1.03282 0.94711 0.82132 1.45996 1.29276 1.46837 1.14805 1.18884 0.80629 0.77412 0.88185 1.90806 1.70297 1.54537 1.30325 1.20074 0.95514 1.08148 0.92150 1.21234 0.90518 0.96796 0.99768 1.21590 1.02076 0.97528 0.91620 1.21664 0.92654 0.95049 0.99773 1.21457 0.95631 1.00566 0.96922 1.17750 0.82065 1.01211 0.93102 0.92691 0.99056 1.00404 0.90406 0.87547 0.90332 0.87619 0.83987 0.88625 0.75436 0.84100 0.81410 0.81586 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.29 13.29 21.45 0.28 -60.01 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -32.37 9.11 25.60 0.23 -32.14 16 8 H 0.07 3.91 7.74 -2.91 -0.02 3.88 16 9 C 0.05 2.75 4.26 29.85 0.13 2.88 16 10 C -0.11 -5.06 4.40 29.85 0.13 -4.93 16 11 C 0.52 21.65 7.63 87.65 0.67 22.32 16 12 O -0.56 -28.01 15.44 -3.02 -0.05 -28.06 16 13 N -0.57 -17.14 2.32 -632.44 -1.47 -18.61 16 14 C 0.08 1.69 6.31 86.32 0.54 2.23 16 15 C 0.10 1.50 6.30 86.27 0.54 2.04 16 16 N -0.72 -16.02 5.37 -466.62 -2.50 -18.53 16 17 C 0.56 16.77 7.18 86.55 0.62 17.39 16 18 O -0.58 -22.26 17.88 -3.99 -0.07 -22.33 16 19 C -0.15 -3.93 4.90 -20.04 -0.10 -4.03 16 20 C -0.06 -1.25 9.79 22.46 0.22 -1.03 16 21 C -0.11 -1.51 10.03 22.28 0.22 -1.29 16 22 C -0.07 -1.05 10.03 22.33 0.22 -0.82 16 23 C -0.13 -2.59 8.69 22.32 0.19 -2.39 16 24 C 0.15 3.83 4.08 38.57 0.16 3.99 16 25 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 26 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 27 H -0.02 -1.49 8.10 -2.39 -0.02 -1.51 16 28 H 0.08 3.50 8.12 -2.38 -0.02 3.48 16 29 H 0.11 4.17 7.05 -2.38 -0.02 4.15 16 30 H 0.08 2.04 7.10 -2.39 -0.02 2.03 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.14 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.10 1.12 7.57 -2.39 -0.02 1.10 16 34 H 0.41 8.35 8.93 -92.70 -0.83 7.52 16 35 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 36 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.14 2.72 7.98 -2.91 -0.02 2.70 16 Total: -1.00 -86.98 322.77 2.73 -84.25 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.26 Total: 11.49 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 4.25 Total: 4.49 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -3.69 Total: -97.14 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.12 Total: -50.38 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -86.98 2.73 -84.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291663277.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.075 kcal (2) G-P(sol) polarization free energy of solvation -86.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds