Wall clock time and date at job start Tue Mar 31 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48493 * 109.47083 * 269.99351 * 3 2 1 5 5 H 1.48500 * 109.47362 * 29.99702 * 3 2 1 6 6 H 1.48502 * 109.46764 * 149.99754 * 3 2 1 7 7 C 1.37872 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00112 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47336 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99627 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00343 * 180.02562 * 11 10 9 14 14 C 1.39930 * 119.99700 * 184.61767 * 13 11 10 15 15 C 1.38944 * 120.02889 * 144.90512 * 14 13 11 16 16 C 1.38145 * 120.07687 * 179.97438 * 15 14 13 17 17 C 1.38165 * 120.12298 * 359.97438 * 16 15 14 18 18 C 1.38919 * 120.07786 * 0.02562 * 17 16 15 19 19 C 1.38728 * 120.03222 * 324.87990 * 14 13 11 20 20 N 1.39838 * 119.92957 * 179.97438 * 18 17 16 21 21 C 1.34554 * 120.45995 * 18.53108 * 20 18 17 22 22 O 1.21290 * 119.61654 * 180.77254 * 21 20 18 23 23 C 1.50495 * 120.76518 * 0.80002 * 21 20 18 24 24 C 1.50683 * 120.11170 * 179.97438 * 17 16 15 25 25 H 0.97000 * 120.00003 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.46927 * 59.99160 * 9 7 2 27 27 H 1.08998 * 109.46743 * 299.99406 * 9 7 2 28 28 H 1.08998 * 109.47597 * 59.99240 * 10 9 7 29 29 H 1.09012 * 109.47097 * 299.99542 * 10 9 7 30 30 H 0.97001 * 120.00410 * 4.60766 * 13 11 10 31 31 H 1.08002 * 119.96444 * 359.70373 * 15 14 13 32 32 H 1.08005 * 119.94073 * 179.97438 * 16 15 14 33 33 H 1.08001 * 120.07914 * 359.97438 * 19 14 13 34 34 H 0.97004 * 119.76268 * 198.51105 * 20 18 17 35 35 H 1.08997 * 109.39602 * 204.65492 * 23 21 20 36 36 H 1.08993 * 109.40218 * 84.91314 * 23 21 20 37 37 H 1.08997 * 109.46006 * 266.08072 * 24 17 16 38 38 H 1.08998 * 109.46082 * 26.05447 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4918 -4.9672 -0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1657 -6.1343 0.0003 14 6 1.4695 -7.3441 -0.0978 15 6 2.0232 -8.4104 -0.7957 16 6 1.3370 -9.6054 -0.8928 17 6 0.0986 -9.7443 -0.2961 18 6 -0.4604 -8.6820 0.4031 19 6 0.2260 -7.4803 0.5020 20 7 -1.7142 -8.8258 1.0054 21 6 -2.2207 -10.0497 1.2425 22 8 -3.3157 -10.1566 1.7529 23 6 -1.4439 -11.2873 0.8823 24 6 -0.6499 -11.0477 -0.4026 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5570 -0.8895 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6042 0.8904 29 1 2.8719 -3.6043 -0.8896 30 1 3.1333 -6.1357 0.0685 31 1 2.9893 -8.3034 -1.2666 32 1 1.7693 -10.4327 -1.4362 33 1 -0.2061 -6.6532 1.0457 34 1 -2.2221 -8.0378 1.2543 35 1 -2.1345 -12.1170 0.7316 36 1 -0.7570 -11.5322 1.6923 37 1 -1.3341 -11.0053 -1.2500 38 1 0.0590 -11.8627 -0.5486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292045708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:13 Heat of formation + Delta-G solvation = -62.680464 kcal Electronic energy + Delta-G solvation = -21628.703264 eV Core-core repulsion = 18242.026320 eV Total energy + Delta-G solvation = -3386.676943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.19515 -39.95435 -38.41572 -35.88858 -34.38776 -33.59436 -33.41527 -31.17257 -29.87823 -29.00615 -25.99328 -24.50318 -23.20964 -22.98495 -21.70901 -19.87939 -19.37738 -18.31239 -17.31253 -16.99860 -16.28348 -15.95787 -15.88600 -15.52077 -15.12403 -14.50954 -14.40669 -14.28630 -13.77818 -13.70944 -13.36528 -13.22702 -12.86485 -12.48760 -12.24294 -11.99418 -11.59807 -11.42983 -11.23708 -11.02563 -10.96486 -10.65693 -10.24388 -10.07017 -9.97583 -9.76740 -9.32198 -9.14698 -8.43798 -8.38105 -7.95286 -6.02226 -4.07247 0.99494 1.20936 2.33538 2.84305 2.96098 3.25851 3.29651 3.36421 3.38618 3.66983 4.14102 4.42147 4.43049 4.48229 4.72436 4.90892 5.05790 5.08016 5.19816 5.33064 5.36230 5.37980 5.51775 5.61156 5.68061 5.98961 6.06634 6.07122 6.18946 6.26164 6.31478 6.54235 6.75269 6.87317 7.07587 7.56373 7.66492 7.75380 7.80043 7.98480 8.28546 8.48521 9.00540 9.56928 11.08630 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.002974 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.620876 B = 9414.049964 C =10225.649254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.512 6.512 13 N -0.686 5.686 14 C 0.187 3.813 15 C -0.171 4.171 16 C -0.065 4.065 17 C -0.151 4.151 18 C 0.176 3.824 19 C -0.155 4.155 20 N -0.660 5.660 21 C 0.521 3.479 22 O -0.533 6.533 23 C -0.138 4.138 24 C -0.071 4.071 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.411 0.589 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.148 0.852 34 H 0.414 0.586 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.462 -23.554 -0.988 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.385 6.385 13 N -0.332 5.332 14 C 0.091 3.909 15 C -0.192 4.192 16 C -0.084 4.084 17 C -0.154 4.154 18 C 0.079 3.921 19 C -0.178 4.178 20 N -0.304 5.304 21 C 0.309 3.691 22 O -0.409 6.409 23 C -0.177 4.177 24 C -0.109 4.109 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.247 0.753 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.166 0.834 34 H 0.253 0.747 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.859 -23.581 -0.725 23.906 hybrid contribution 0.826 1.442 0.067 1.663 sum 4.685 -22.139 -0.658 22.639 Atomic orbital electron populations 1.69989 1.06074 1.26714 1.49937 1.25023 0.94837 0.99295 0.95188 0.86577 0.79760 0.83424 0.78107 1.20633 1.21186 1.19861 1.21186 0.92943 0.90897 1.51741 0.92528 1.18920 0.93133 0.89325 0.98737 1.21923 1.00864 0.91105 1.02962 1.21898 0.88859 0.85453 0.73843 1.90670 1.14392 1.87135 1.46328 1.43970 1.10836 1.04188 1.74180 1.17560 0.92580 0.86094 0.94658 1.20870 1.02237 0.93535 1.02551 1.20544 0.92966 0.97114 0.97817 1.19410 0.97346 0.95444 1.03196 1.17422 0.85543 0.94298 0.94822 1.20946 0.95968 0.97283 1.03613 1.43652 1.18039 1.09534 1.59208 1.20763 0.86098 0.85144 0.77048 1.90780 1.20692 1.86743 1.42707 1.21691 1.00382 0.95699 0.99968 1.20361 0.98583 0.94929 0.96989 0.92866 0.95720 0.95727 0.89735 0.89708 0.75286 0.85357 0.85140 0.83450 0.74746 0.87489 0.87899 0.90186 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.56 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 10 C -0.13 -2.41 5.64 -27.89 -0.16 -2.56 16 11 C 0.51 8.99 7.67 -10.99 -0.08 8.91 16 12 O -0.51 -11.06 13.42 5.55 0.07 -10.99 16 13 N -0.69 -8.85 5.34 -9.88 -0.05 -8.90 16 14 C 0.19 2.40 6.30 -83.72 -0.53 1.87 16 15 C -0.17 -1.67 9.96 -39.35 -0.39 -2.06 16 16 C -0.07 -0.56 9.68 -39.64 -0.38 -0.94 16 17 C -0.15 -1.46 5.66 -104.40 -0.59 -2.05 16 18 C 0.18 2.13 6.50 -83.76 -0.54 1.59 16 19 C -0.16 -2.18 8.57 -39.21 -0.34 -2.52 16 20 N -0.66 -8.00 5.36 -10.02 -0.05 -8.05 16 21 C 0.52 6.25 7.72 -11.18 -0.09 6.17 16 22 O -0.53 -8.29 17.91 5.55 0.10 -8.19 16 23 C -0.14 -1.07 6.08 -28.02 -0.17 -1.25 16 24 C -0.07 -0.50 6.00 -27.93 -0.17 -0.67 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 30 H 0.41 3.78 8.82 -40.82 -0.36 3.42 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 33 H 0.15 2.40 6.22 -52.49 -0.33 2.08 16 34 H 0.41 5.03 8.83 -40.82 -0.36 4.67 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.40 8.06 -51.93 -0.42 -0.02 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -35.19 325.78 -8.09 -43.27 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.81 Total: 3.90 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.97 Total: -6.01 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.63 Total: -43.13 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.17 Total: -19.18 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.19 -8.09 -43.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292045708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.409 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds