Wall clock time and date at job start Tue Mar 31 2020 06:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86801 * 119.99706 * 2 1 4 4 H 1.48500 * 109.47290 * 269.99464 * 3 2 1 5 5 H 1.48502 * 109.47180 * 30.00063 * 3 2 1 6 6 H 1.48499 * 109.47122 * 149.99585 * 3 2 1 7 7 C 1.38952 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99951 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.34776 * 120.00095 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99853 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00326 * 179.97438 * 10 9 7 13 13 H 1.08998 * 109.39466 * 299.99862 * 12 10 9 14 14 C 1.53068 * 109.40377 * 180.16935 * 12 10 9 15 15 C 1.53320 * 108.43453 * 190.88040 * 14 12 10 16 16 C 1.52923 * 108.58855 * 67.66839 * 15 14 12 17 17 N 1.45753 * 110.48959 * 309.21201 * 16 15 14 18 18 C 1.39920 * 117.94832 * 199.07233 * 17 16 15 19 19 C 1.38871 * 120.07222 * 270.64780 * 18 17 16 20 20 C 1.38115 * 119.92714 * 179.78866 * 19 18 17 21 21 C 1.38274 * 120.07325 * 0.48870 * 20 19 18 22 22 C 1.38280 * 120.14128 * 359.74208 * 21 20 19 23 23 C 1.38114 * 120.06981 * 0.02575 * 22 21 20 24 24 C 1.33350 * 124.10491 * 19.05327 * 17 16 15 25 25 O 1.21295 * 118.24724 * 177.79954 * 24 17 16 26 26 H 0.96995 * 120.00552 * 0.02562 * 1 2 3 27 27 H 0.96994 * 119.99827 * 0.27379 * 9 7 2 28 28 H 1.09003 * 109.66897 * 310.70159 * 14 12 10 29 29 H 1.09001 * 109.67210 * 71.23155 * 14 12 10 30 30 H 1.09003 * 109.67635 * 307.92405 * 15 14 12 31 31 H 1.08992 * 109.75110 * 187.46303 * 15 14 12 32 32 H 1.09002 * 109.29775 * 188.89674 * 16 15 14 33 33 H 1.09003 * 109.13031 * 69.42012 * 16 15 14 34 34 H 1.08001 * 120.03423 * 0.02639 * 19 18 17 35 35 H 1.08007 * 119.96308 * 180.23151 * 20 19 18 36 36 H 1.07999 * 119.92804 * 179.76760 * 21 20 19 37 37 H 1.07997 * 119.96863 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.03399 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0539 -2.3704 0.0011 11 8 3.4474 -3.4208 0.0011 12 6 5.5609 -2.3704 0.0011 13 1 5.9228 -1.8563 -0.8893 14 6 6.0694 -3.8141 -0.0032 15 6 7.5777 -3.7976 0.2714 16 6 7.8063 -3.3308 1.7096 17 7 7.0798 -2.0935 1.9660 18 6 7.4780 -1.3133 3.0570 19 6 6.9187 -1.5311 4.3093 20 6 7.3171 -0.7621 5.3852 21 6 8.2645 0.2305 5.2143 22 6 8.8199 0.4531 3.9677 23 6 8.4292 -0.3156 2.8888 24 6 6.0597 -1.6583 1.2256 25 8 5.5047 -0.6327 1.5593 26 1 -0.4851 0.8400 -0.0004 27 1 3.8648 -0.3632 0.0051 28 1 5.5600 -4.3848 0.7733 29 1 5.8798 -4.2670 -0.9764 30 1 8.0689 -3.1111 -0.4183 31 1 7.9865 -4.7998 0.1428 32 1 8.8715 -3.1629 1.8688 33 1 7.4568 -4.1026 2.3955 34 1 6.1758 -2.3036 4.4426 35 1 6.8852 -0.9336 6.3602 36 1 8.5716 0.8329 6.0564 37 1 9.5593 1.2294 3.8373 38 1 8.8637 -0.1415 1.9155 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293267636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:30 Heat of formation + Delta-G solvation = -58.928905 kcal Electronic energy + Delta-G solvation = -23039.626537 eV Core-core repulsion = 19653.112273 eV Total energy + Delta-G solvation = -3386.514264 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.33684 -40.39546 -39.23249 -37.67703 -36.10001 -35.01354 -33.78367 -31.90141 -31.26231 -30.29253 -27.49560 -25.50957 -24.45859 -23.59021 -22.63964 -21.53304 -20.63368 -19.72968 -18.62919 -18.18332 -17.53077 -17.21371 -16.98925 -16.60422 -16.02383 -15.63602 -15.31956 -15.05937 -15.02395 -14.68697 -14.48560 -14.36736 -14.32860 -14.22594 -13.57590 -13.10887 -12.95553 -12.60991 -12.50528 -12.35458 -12.29180 -12.16979 -12.04031 -11.85117 -11.59322 -10.89468 -10.57880 -10.30277 -9.99410 -9.90751 -9.76415 -8.51770 -6.09481 0.26108 0.42111 1.18589 1.24176 1.32404 1.39312 1.65237 2.01773 2.15106 2.76217 2.82478 3.05669 3.55028 3.63556 3.79664 3.89766 3.97286 4.03313 4.21417 4.22556 4.26916 4.40441 4.49855 4.52221 4.62185 4.81291 4.83676 5.05170 5.05740 5.07483 5.33800 5.37542 5.46096 5.51663 5.54095 5.58524 5.85077 6.04384 6.20290 6.48019 6.76319 6.99298 7.31896 7.82351 8.65011 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.006066 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.556966 B = 4614.968008 C = 5869.286303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.001 4.001 3 Si 0.945 3.055 4 H -0.247 1.247 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.330 4.330 8 H 0.065 0.935 9 N -0.572 5.572 10 C 0.454 3.546 11 O -0.617 6.617 12 C -0.108 4.108 13 H 0.147 0.853 14 C -0.098 4.098 15 C -0.120 4.120 16 C 0.106 3.894 17 N -0.556 5.556 18 C 0.113 3.887 19 C -0.133 4.133 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.119 4.119 24 C 0.523 3.477 25 O -0.571 6.571 26 H 0.282 0.718 27 H 0.390 0.610 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.514 -0.905 6.329 27.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.201 4.201 3 Si 0.765 3.235 4 H -0.171 1.171 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.459 4.459 8 H 0.083 0.917 9 N -0.211 5.211 10 C 0.240 3.760 11 O -0.503 6.503 12 C -0.132 4.132 13 H 0.165 0.835 14 C -0.136 4.136 15 C -0.158 4.158 16 C -0.014 4.014 17 N -0.286 5.286 18 C 0.024 3.976 19 C -0.152 4.152 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.131 4.131 23 C -0.138 4.138 24 C 0.312 3.688 25 O -0.450 6.450 26 H 0.091 0.909 27 H 0.226 0.774 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.161 0.839 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 25.607 -0.985 6.454 26.426 hybrid contribution -0.737 0.795 0.018 1.084 sum 24.869 -0.190 6.472 25.699 Atomic orbital electron populations 1.69756 1.07544 1.29309 1.49538 1.25901 0.96366 1.02014 0.95845 0.85631 0.79413 0.78051 0.80383 1.17079 1.19072 1.17597 1.19117 0.81296 0.95222 1.50272 0.91686 1.42217 1.06086 1.07932 1.64865 1.20139 0.89551 0.83530 0.82735 1.90523 1.70715 1.32278 1.56785 1.21406 0.91964 1.01617 0.98196 0.83538 1.21481 0.96720 0.91141 1.04253 1.21948 0.93757 1.05249 0.94820 1.21878 0.97559 0.83478 0.98513 1.44938 1.32556 1.24028 1.27077 1.17828 0.97613 0.95144 0.87000 1.21449 0.99518 1.00965 0.93270 1.21336 0.97809 0.95708 0.98814 1.21590 0.96041 0.97307 0.98484 1.21418 1.00346 0.99260 0.92099 1.21470 0.97205 0.94681 1.00423 1.20084 0.79301 0.84718 0.84693 1.90751 1.56370 1.26813 1.71043 0.90861 0.77359 0.92439 0.89252 0.89006 0.85725 0.87406 0.91043 0.87399 0.83923 0.82804 0.82758 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.06 13.96 21.66 0.30 -57.75 16 2 C 0.00 -0.06 5.50 84.93 0.47 0.41 16 3 Si 0.94 44.63 27.74 68.60 1.90 46.53 16 4 H -0.25 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.25 -11.85 6.51 99.48 0.65 -11.20 16 7 C -0.33 -20.98 10.16 84.04 0.85 -20.12 16 8 H 0.07 4.73 7.39 -2.91 -0.02 4.71 16 9 N -0.57 -31.31 4.58 -306.98 -1.41 -32.71 16 10 C 0.45 22.78 7.01 87.66 0.61 23.39 16 11 O -0.62 -35.57 15.37 -3.07 -0.05 -35.62 16 12 C -0.11 -3.75 2.78 -12.43 -0.03 -3.79 16 13 H 0.15 4.17 8.14 -2.39 -0.02 4.15 16 14 C -0.10 -2.60 4.77 30.72 0.15 -2.46 16 15 C -0.12 -1.82 6.02 30.68 0.18 -1.63 16 16 C 0.11 1.86 6.34 86.49 0.55 2.40 16 17 N -0.56 -15.21 2.85 -635.80 -1.81 -17.02 16 18 C 0.11 3.08 4.01 38.15 0.15 3.24 16 19 C -0.13 -3.62 9.97 22.39 0.22 -3.40 16 20 C -0.12 -2.55 10.04 22.25 0.22 -2.32 16 21 C -0.12 -2.07 10.04 22.29 0.22 -1.84 16 22 C -0.11 -2.04 10.04 22.25 0.22 -1.82 16 23 C -0.12 -2.67 9.97 22.39 0.22 -2.45 16 24 C 0.52 18.80 7.00 87.72 0.61 19.42 16 25 O -0.57 -25.71 14.47 -3.08 -0.04 -25.75 16 26 H 0.28 16.17 8.31 -92.71 -0.77 15.40 16 27 H 0.39 19.80 4.40 -92.71 -0.41 19.39 16 28 H 0.06 1.82 7.72 -2.39 -0.02 1.80 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 31 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 1.28 8.08 -2.39 -0.02 1.26 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -86.06 320.24 4.17 -81.88 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.61 Total: 31.41 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 4.67 Total: 9.03 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -2.91 Total: -107.49 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -0.09 Total: -61.37 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Total: -86.06 4.17 -81.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293267636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.956 kcal (2) G-P(sol) polarization free energy of solvation -86.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds