Wall clock time and date at job start Tue Mar 31 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46874 * 299.99819 * 3 2 1 6 6 H 1.48499 * 109.47422 * 60.00219 * 3 2 1 7 7 C 1.37883 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99504 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46816 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99858 * 179.97438 * 10 9 7 12 12 O 1.21582 * 120.00173 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99992 * 180.02562 * 11 10 9 14 14 C 1.39984 * 120.00161 * 184.62968 * 13 11 10 15 15 C 1.39019 * 120.10011 * 144.91879 * 14 13 11 16 16 C 1.38116 * 120.41582 * 180.02562 * 15 14 13 17 17 C 1.38377 * 120.46885 * 359.92116 * 16 15 14 18 18 C 1.39614 * 119.36635 * 359.92463 * 17 16 15 19 19 C 1.38549 * 120.09603 * 324.89256 * 14 13 11 20 20 C 1.47628 * 120.10257 * 180.34024 * 18 17 16 21 21 O 1.21252 * 121.16760 * 168.61253 * 20 18 17 22 22 C 1.51466 * 117.65432 * 348.62775 * 20 18 17 23 23 C 1.53444 * 107.37052 * 42.48386 * 22 20 18 24 24 C 1.50438 * 119.04590 * 179.75315 * 17 16 15 25 25 H 0.96996 * 120.00316 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47125 * 60.00273 * 9 7 2 27 27 H 1.08997 * 109.47376 * 299.99758 * 9 7 2 28 28 H 0.96999 * 120.00328 * 0.02562 * 10 9 7 29 29 H 0.97001 * 119.99786 * 4.63067 * 13 11 10 30 30 H 1.08002 * 119.79413 * 0.34960 * 15 14 13 31 31 H 1.08001 * 119.76545 * 179.89656 * 16 15 14 32 32 H 1.07999 * 120.14318 * 0.04003 * 19 14 13 33 33 H 1.09001 * 109.88062 * 283.01610 * 22 20 18 34 34 H 1.09007 * 109.87186 * 161.94455 * 22 20 18 35 35 H 1.09000 * 109.48745 * 176.01292 * 23 22 20 36 36 H 1.08994 * 109.50640 * 55.96534 * 23 22 20 37 37 H 1.08995 * 109.12507 * 277.95953 * 24 17 16 38 38 H 1.09004 * 109.12569 * 37.10702 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0015 12 8 0.5583 -5.1055 -0.0006 13 7 2.6294 -5.9078 -0.0021 14 6 2.1658 -7.2250 -0.0996 15 6 2.9035 -8.1739 -0.7981 16 6 2.4519 -9.4753 -0.8989 17 6 1.2604 -9.8525 -0.3049 18 6 0.5169 -8.9046 0.4006 19 6 0.9705 -7.5870 0.5002 20 6 -0.7528 -9.2910 1.0470 21 8 -1.3098 -8.5504 1.8290 22 6 -1.3350 -10.6454 0.6992 23 6 -0.1756 -11.6503 0.6766 24 6 0.7960 -11.2770 -0.4397 25 1 -0.4850 0.8400 0.0004 26 1 0.6239 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8897 28 1 3.1566 -3.4355 -0.0021 29 1 3.5811 -5.7324 0.0651 30 1 3.8383 -7.8930 -1.2605 31 1 3.0326 -10.2035 -1.4456 32 1 0.3928 -6.8542 1.0440 33 1 -1.8090 -10.6044 -0.2815 34 1 -2.0655 -10.9393 1.4530 35 1 -0.5662 -12.6522 0.4987 36 1 0.3445 -11.6275 1.6342 37 1 0.2991 -11.4012 -1.4018 38 1 1.6601 -11.9400 -0.3961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335784421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:29 Heat of formation + Delta-G solvation = -51.830906 kcal Electronic energy + Delta-G solvation = -21770.918777 eV Core-core repulsion = 18384.712305 eV Total energy + Delta-G solvation = -3386.206471 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.70539 -39.56384 -38.01657 -36.02618 -34.27402 -33.85152 -32.35826 -31.21923 -29.87358 -27.97711 -26.83969 -23.82836 -23.29231 -22.36281 -21.57843 -20.33283 -19.31531 -18.26499 -17.37197 -16.30974 -16.02988 -15.70582 -15.38463 -15.02578 -14.75815 -14.72496 -14.40756 -14.07933 -13.81664 -13.61243 -13.32847 -13.11027 -12.91433 -12.35489 -12.02272 -11.92336 -11.85500 -11.46947 -11.34951 -11.08330 -10.95497 -10.94217 -10.33104 -10.04622 -9.60845 -9.46885 -9.39667 -8.95517 -8.78011 -8.13941 -7.74087 -6.17985 -4.25232 0.67796 1.34653 2.38115 3.08314 3.22847 3.30241 3.33239 3.56387 3.90483 3.98754 4.30433 4.42668 4.50059 4.68701 4.85060 4.89658 4.93749 5.10914 5.18274 5.19655 5.32506 5.39027 5.47340 5.54064 5.65122 5.81741 5.83524 5.90324 6.23216 6.32985 6.40128 6.57690 6.99077 7.09161 7.37632 7.47533 7.51013 7.53671 7.79464 7.96849 8.66082 8.81218 9.15942 9.41738 10.92218 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.032639 B = 0.003096 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.675565 B = 9041.823635 C = 9750.182020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.265 3.735 10 N -0.720 5.720 11 C 0.689 3.311 12 O -0.580 6.580 13 N -0.696 5.696 14 C 0.164 3.836 15 C -0.121 4.121 16 C -0.116 4.116 17 C -0.062 4.062 18 C -0.152 4.152 19 C -0.062 4.062 20 C 0.396 3.604 21 O -0.446 6.446 22 C -0.163 4.163 23 C -0.113 4.113 24 C -0.082 4.082 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.389 0.611 29 H 0.404 0.596 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.335 -24.083 -1.707 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.144 3.856 10 N -0.372 5.372 11 C 0.389 3.611 12 O -0.457 6.457 13 N -0.344 5.344 14 C 0.068 3.932 15 C -0.142 4.142 16 C -0.134 4.134 17 C -0.063 4.063 18 C -0.154 4.154 19 C -0.083 4.083 20 C 0.273 3.727 21 O -0.320 6.320 22 C -0.201 4.201 23 C -0.151 4.151 24 C -0.119 4.119 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.221 0.779 29 H 0.239 0.761 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.173 0.827 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.748 -23.592 -1.296 24.100 hybrid contribution 1.465 1.239 -0.156 1.925 sum 6.213 -22.353 -1.452 23.246 Atomic orbital electron populations 1.69983 1.06101 1.27274 1.48737 1.24950 0.94927 0.99457 0.94689 0.86341 0.79757 0.82896 0.77776 1.19660 1.20779 1.20761 1.21232 0.93302 0.90297 1.53371 0.91825 1.19079 0.87720 0.80865 0.97920 1.45773 1.11140 1.04074 1.76195 1.16193 0.85147 0.81104 0.78682 1.90905 1.13896 1.83573 1.57345 1.42797 1.10010 1.03455 1.78142 1.17454 0.95276 0.83732 0.96771 1.21053 1.01116 0.93384 0.98663 1.20762 0.96183 0.95676 1.00804 1.19921 0.94542 0.95097 0.96783 1.20155 0.97907 0.94078 1.03252 1.21714 0.95390 0.95203 0.95960 1.22735 0.83931 0.87527 0.78482 1.90573 1.59672 1.53331 1.28386 1.22310 0.99264 0.93959 1.04579 1.21491 0.95417 0.98648 0.99497 1.20425 0.99613 0.92278 0.99579 0.92427 0.95467 0.95414 0.77884 0.76074 0.85390 0.85336 0.82737 0.88014 0.88900 0.90314 0.91199 0.89983 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.26 7.07 5.43 -5.19 -0.03 7.05 16 10 N -0.72 -15.22 5.55 -66.41 -0.37 -15.59 16 11 C 0.69 14.27 8.41 -86.92 -0.73 13.54 16 12 O -0.58 -14.53 13.78 5.29 0.07 -14.46 16 13 N -0.70 -10.68 5.35 -14.25 -0.08 -10.76 16 14 C 0.16 2.46 6.30 -83.73 -0.53 1.93 16 15 C -0.12 -1.36 9.95 -39.34 -0.39 -1.75 16 16 C -0.12 -1.12 9.64 -39.57 -0.38 -1.51 16 17 C -0.06 -0.66 5.78 -104.19 -0.60 -1.26 16 18 C -0.15 -2.16 5.82 -105.01 -0.61 -2.77 16 19 C -0.06 -1.06 8.25 -38.92 -0.32 -1.38 16 20 C 0.40 5.61 6.89 -30.10 -0.21 5.40 16 21 O -0.45 -8.15 17.26 5.58 0.10 -8.06 16 22 C -0.16 -1.48 6.18 -27.28 -0.17 -1.65 16 23 C -0.11 -0.76 5.90 -26.70 -0.16 -0.92 16 24 C -0.08 -0.57 5.70 -28.20 -0.16 -0.73 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.39 6.86 8.34 -40.82 -0.34 6.52 16 29 H 0.40 4.60 8.84 -40.82 -0.36 4.24 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.16 3.25 5.88 -52.49 -0.31 2.94 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -35.06 325.24 -9.13 -44.19 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.77 Total: 6.81 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -4.70 Total: 2.57 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.29 Total: -51.79 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.17 Total: -22.52 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.06 -9.13 -44.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335784421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.643 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds