Wall clock time and date at job start Tue Mar 31 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47212 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46874 * 299.99819 * 3 2 1 6 6 H 1.48499 * 109.47422 * 60.00219 * 3 2 1 7 7 C 1.37883 * 120.00163 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99504 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46816 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99858 * 179.97438 * 10 9 7 12 12 O 1.21582 * 120.00173 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99992 * 180.02562 * 11 10 9 14 14 C 1.39984 * 120.00161 * 184.62968 * 13 11 10 15 15 C 1.39019 * 120.10011 * 144.91879 * 14 13 11 16 16 C 1.38116 * 120.41582 * 180.02562 * 15 14 13 17 17 C 1.38377 * 120.46885 * 359.92116 * 16 15 14 18 18 C 1.39614 * 119.36635 * 359.92463 * 17 16 15 19 19 C 1.38549 * 120.09603 * 324.89256 * 14 13 11 20 20 C 1.47628 * 120.10257 * 180.34024 * 18 17 16 21 21 O 1.21252 * 121.16760 * 168.61253 * 20 18 17 22 22 C 1.51466 * 117.65432 * 348.62775 * 20 18 17 23 23 C 1.53444 * 107.37052 * 42.48386 * 22 20 18 24 24 C 1.50438 * 119.04590 * 179.75315 * 17 16 15 25 25 H 0.96996 * 120.00316 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47125 * 60.00273 * 9 7 2 27 27 H 1.08997 * 109.47376 * 299.99758 * 9 7 2 28 28 H 0.96999 * 120.00328 * 0.02562 * 10 9 7 29 29 H 0.97001 * 119.99786 * 4.63067 * 13 11 10 30 30 H 1.08002 * 119.79413 * 0.34960 * 15 14 13 31 31 H 1.08001 * 119.76545 * 179.89656 * 16 15 14 32 32 H 1.07999 * 120.14318 * 0.04003 * 19 14 13 33 33 H 1.09001 * 109.88062 * 283.01610 * 22 20 18 34 34 H 1.09007 * 109.87186 * 161.94455 * 22 20 18 35 35 H 1.09000 * 109.48745 * 176.01292 * 23 22 20 36 36 H 1.08994 * 109.50640 * 55.96534 * 23 22 20 37 37 H 1.08995 * 109.12507 * 277.95953 * 24 17 16 38 38 H 1.09004 * 109.12569 * 37.10702 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0015 12 8 0.5583 -5.1055 -0.0006 13 7 2.6294 -5.9078 -0.0021 14 6 2.1658 -7.2250 -0.0996 15 6 2.9035 -8.1739 -0.7981 16 6 2.4519 -9.4753 -0.8989 17 6 1.2604 -9.8525 -0.3049 18 6 0.5169 -8.9046 0.4006 19 6 0.9705 -7.5870 0.5002 20 6 -0.7528 -9.2910 1.0470 21 8 -1.3098 -8.5504 1.8290 22 6 -1.3350 -10.6454 0.6992 23 6 -0.1756 -11.6503 0.6766 24 6 0.7960 -11.2770 -0.4397 25 1 -0.4850 0.8400 0.0004 26 1 0.6239 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8897 28 1 3.1566 -3.4355 -0.0021 29 1 3.5811 -5.7324 0.0651 30 1 3.8383 -7.8930 -1.2605 31 1 3.0326 -10.2035 -1.4456 32 1 0.3928 -6.8542 1.0440 33 1 -1.8090 -10.6044 -0.2815 34 1 -2.0655 -10.9393 1.4530 35 1 -0.5662 -12.6522 0.4987 36 1 0.3445 -11.6275 1.6342 37 1 0.2991 -11.4012 -1.4018 38 1 1.6601 -11.9400 -0.3961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335784421.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:29 Heat of formation + Delta-G solvation = -77.767457 kcal Electronic energy + Delta-G solvation = -21772.043470 eV Core-core repulsion = 18384.712305 eV Total energy + Delta-G solvation = -3387.331165 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.88983 -40.94811 -39.22587 -37.10524 -36.17300 -35.11194 -34.31076 -32.24673 -30.90980 -29.38627 -28.32764 -25.25139 -24.48767 -23.68214 -22.56151 -21.93642 -20.31841 -19.92399 -18.59318 -18.04206 -17.26818 -16.93796 -16.64983 -16.50920 -16.33470 -15.87663 -15.60721 -15.43922 -15.03109 -14.75738 -14.50568 -14.15705 -14.11557 -14.03771 -13.68223 -13.22107 -12.90389 -12.83312 -12.77464 -12.29213 -12.22518 -12.01119 -11.78948 -11.49096 -11.38904 -11.05444 -10.85905 -10.62347 -9.99834 -9.97852 -8.99205 -8.31863 -6.49243 -0.34828 0.31026 1.33994 1.41409 1.43753 1.56295 1.66575 2.04537 2.36493 2.78138 3.01164 3.03384 3.37806 3.73028 3.79161 3.95363 4.10651 4.17906 4.22720 4.34445 4.55760 4.63241 4.79425 4.81282 4.96348 5.00180 5.06866 5.16641 5.18848 5.27918 5.31776 5.33977 5.41274 5.46997 5.51354 5.60330 5.78243 5.97949 6.12551 6.48373 6.62050 7.11714 7.21534 7.53687 8.80910 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.032639 B = 0.003096 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.675565 B = 9041.823635 C = 9750.182020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.990 3.010 4 H -0.251 1.251 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.284 3.716 10 N -0.713 5.713 11 C 0.687 3.313 12 O -0.631 6.631 13 N -0.672 5.672 14 C 0.129 3.871 15 C -0.101 4.101 16 C -0.105 4.105 17 C -0.042 4.042 18 C -0.181 4.181 19 C -0.101 4.101 20 C 0.385 3.615 21 O -0.511 6.511 22 C -0.157 4.157 23 C -0.108 4.108 24 C -0.083 4.083 25 H 0.269 0.731 26 H -0.013 1.013 27 H -0.016 1.016 28 H 0.409 0.591 29 H 0.426 0.574 30 H 0.166 0.834 31 H 0.181 0.819 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.969 -27.153 -3.682 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.812 3.188 4 H -0.174 1.174 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.161 3.839 10 N -0.366 5.366 11 C 0.387 3.613 12 O -0.512 6.512 13 N -0.322 5.322 14 C 0.034 3.966 15 C -0.121 4.121 16 C -0.123 4.123 17 C -0.043 4.043 18 C -0.182 4.182 19 C -0.123 4.123 20 C 0.267 3.733 21 O -0.390 6.390 22 C -0.194 4.194 23 C -0.146 4.146 24 C -0.119 4.119 25 H 0.078 0.922 26 H 0.005 0.995 27 H 0.002 0.998 28 H 0.245 0.755 29 H 0.265 0.735 30 H 0.183 0.817 31 H 0.199 0.801 32 H 0.114 0.886 33 H 0.138 0.862 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.479 -26.746 -3.284 28.249 hybrid contribution 0.316 1.996 0.435 2.067 sum 8.795 -24.750 -2.849 26.420 Atomic orbital electron populations 1.70157 1.08414 1.28622 1.49855 1.26123 0.95798 1.04074 0.93776 0.85042 0.79084 0.76967 0.77674 1.17392 1.20351 1.20531 1.21614 0.94416 0.90167 1.53025 0.89465 1.18476 0.88090 0.83283 0.94031 1.45288 1.11268 1.03306 1.76768 1.16360 0.85059 0.81762 0.78095 1.90890 1.16667 1.84411 1.59241 1.42357 1.10165 1.02653 1.77035 1.17732 0.95821 0.83894 0.99121 1.21483 1.01332 0.92954 0.96340 1.21400 0.95633 0.95769 0.99492 1.20497 0.93789 0.96364 0.93661 1.20382 0.98944 0.93852 1.05071 1.21442 0.96794 0.95977 0.98053 1.23744 0.83729 0.89026 0.76814 1.90541 1.61349 1.55659 1.31406 1.22392 1.00488 0.91099 1.05421 1.21557 0.94246 0.99327 0.99432 1.20637 1.01153 0.89617 1.00471 0.92188 0.99475 0.99825 0.75523 0.73541 0.81660 0.80131 0.88606 0.86186 0.88458 0.86645 0.91878 0.87667 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.99 42.87 29.54 68.60 2.03 44.90 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.55 -30.71 9.28 25.60 0.24 -30.47 16 8 H 0.09 4.32 7.60 -2.91 -0.02 4.30 16 9 C 0.28 16.27 5.43 85.63 0.46 16.73 16 10 N -0.71 -31.70 5.55 -482.28 -2.68 -34.38 16 11 C 0.69 30.54 8.41 179.05 1.51 32.05 16 12 O -0.63 -35.10 13.78 -3.98 -0.05 -35.15 16 13 N -0.67 -21.21 5.35 -317.27 -1.70 -22.90 16 14 C 0.13 3.94 6.30 38.10 0.24 4.18 16 15 C -0.10 -1.92 9.95 22.43 0.22 -1.70 16 16 C -0.10 -1.50 9.64 22.27 0.21 -1.29 16 17 C -0.04 -0.75 5.78 -19.58 -0.11 -0.87 16 18 C -0.18 -5.32 5.82 -20.11 -0.12 -5.44 16 19 C -0.10 -3.82 8.25 22.70 0.19 -3.63 16 20 C 0.39 11.72 6.89 28.41 0.20 11.92 16 21 O -0.51 -21.17 17.26 -2.94 -0.05 -21.22 16 22 C -0.16 -2.65 6.18 30.24 0.19 -2.47 16 23 C -0.11 -1.03 5.90 30.62 0.18 -0.85 16 24 C -0.08 -0.68 5.70 29.64 0.17 -0.51 16 25 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 26 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 27 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 28 H 0.41 14.53 8.34 -92.71 -0.77 13.76 16 29 H 0.43 9.29 8.84 -92.71 -0.82 8.47 16 30 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.10 4.70 5.88 -2.91 -0.02 4.68 16 33 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.12 0.29 8.11 -2.39 -0.02 0.27 16 Total: -1.00 -89.07 325.24 1.38 -87.68 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.48 Total: 20.17 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 4.04 Total: 18.22 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -4.09 Total: -114.60 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -0.11 Total: -56.37 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -89.07 1.38 -87.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335784421.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.917 kcal (2) G-P(sol) polarization free energy of solvation -89.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds