Wall clock time and date at job start Tue Mar 31 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48500 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47289 * 300.00151 * 3 2 1 6 6 H 1.48504 * 109.46819 * 59.99969 * 3 2 1 7 7 C 1.37875 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99310 * 180.02562 * 7 2 1 9 9 C 1.50688 * 120.00497 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47576 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47262 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00529 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00021 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.00394 * 184.62492 * 13 11 10 15 15 C 1.38943 * 120.03643 * 324.92635 * 14 13 11 16 16 C 1.38131 * 120.07008 * 179.72126 * 15 14 13 17 17 C 1.38186 * 120.14406 * 359.97438 * 16 15 14 18 18 C 1.38896 * 120.06784 * 359.97438 * 17 16 15 19 19 N 1.39922 * 120.04040 * 179.97438 * 18 17 16 20 20 C 1.46358 * 134.65874 * 0.02562 * 19 18 17 21 21 C 1.52888 * 90.57197 * 179.97438 * 20 19 18 22 22 C 1.34597 * 134.67328 * 179.63670 * 19 18 17 23 23 O 1.21287 * 131.84658 * 0.02634 * 22 19 18 24 24 C 1.38730 * 120.03413 * 144.64336 * 14 13 11 25 25 H 0.97005 * 120.00077 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47157 * 59.99817 * 9 7 2 27 27 H 1.09003 * 109.47002 * 299.99910 * 9 7 2 28 28 H 1.09000 * 109.46829 * 59.99858 * 10 9 7 29 29 H 1.08995 * 109.47268 * 300.00359 * 10 9 7 30 30 H 0.97005 * 119.99579 * 4.63549 * 13 11 10 31 31 H 1.08002 * 119.96378 * 359.69171 * 15 14 13 32 32 H 1.08001 * 119.93253 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.96346 * 180.02562 * 17 16 15 34 34 H 1.08999 * 113.05658 * 295.43190 * 20 19 18 35 35 H 1.09002 * 113.05434 * 64.52631 * 20 19 18 36 36 H 1.09002 * 114.37715 * 113.39653 * 21 20 19 37 37 H 1.08995 * 114.38058 * 246.56786 * 21 20 19 38 38 H 1.08005 * 120.06772 * 0.25431 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4918 -4.9671 -0.0033 12 8 0.2789 -4.9672 -0.0033 13 7 2.1656 -6.1343 -0.0047 14 6 1.4694 -7.3441 -0.1029 15 6 0.2244 -7.4808 0.4985 16 6 -0.4660 -8.6728 0.3972 17 6 0.0783 -9.7327 -0.3027 18 6 1.3220 -9.6021 -0.9072 19 7 1.8729 -10.6759 -1.6153 20 6 1.4379 -12.0402 -1.9176 21 6 2.7282 -12.2953 -2.6969 22 6 3.0149 -10.8714 -2.3003 23 8 3.9593 -10.1438 -2.5234 24 6 2.0189 -8.4064 -0.8059 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5562 -0.8919 27 1 0.6241 -2.5574 0.8880 28 1 2.8719 -3.6051 0.8873 29 1 2.8720 -3.6036 -0.8926 30 1 3.1334 -6.1357 0.0625 31 1 -0.2037 -6.6543 1.0463 32 1 -1.4335 -8.7768 0.8659 33 1 -0.4643 -10.6633 -0.3805 34 1 1.3450 -12.6653 -1.0295 35 1 0.5468 -12.0751 -2.5444 36 1 3.3891 -13.0342 -2.2436 37 1 2.5858 -12.4409 -3.7677 38 1 2.9863 -8.3024 -1.2747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360468422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:19 Heat of formation + Delta-G solvation = -14.696258 kcal Electronic energy + Delta-G solvation = -21372.416698 eV Core-core repulsion = 17987.820506 eV Total energy + Delta-G solvation = -3384.596192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60550 -40.13553 -38.25194 -36.92762 -34.58359 -33.52020 -32.27125 -31.17540 -29.63591 -28.10291 -25.84790 -24.94755 -23.25808 -22.67263 -21.44036 -20.03057 -19.04387 -17.87774 -17.25882 -17.15309 -16.79656 -16.21806 -16.05452 -15.61269 -15.16853 -14.43991 -14.39487 -13.84702 -13.66966 -13.44675 -13.33697 -13.27113 -12.61339 -12.51416 -12.23771 -12.20637 -11.94830 -11.57697 -11.19340 -10.96786 -10.73100 -10.59610 -10.35157 -10.01527 -9.96022 -9.69114 -9.22634 -9.07694 -8.40033 -8.33831 -7.87074 -5.98257 -4.02721 1.13454 1.26496 2.25947 2.38579 3.05697 3.23912 3.32072 3.38813 3.41573 3.45034 3.83466 4.02787 4.39729 4.46239 4.77123 4.81037 4.95900 5.02243 5.17505 5.28598 5.29377 5.37048 5.39417 5.53366 5.62367 5.84687 6.14511 6.14767 6.22434 6.42534 6.46281 6.54506 6.64752 6.82357 7.07232 7.65905 7.71839 7.73571 7.81250 8.03456 8.34295 8.57470 9.05371 9.61142 11.12736 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.002765 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.337651 B =10125.505132 C =10785.337518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.511 6.511 13 N -0.686 5.686 14 C 0.190 3.810 15 C -0.145 4.145 16 C -0.070 4.070 17 C -0.177 4.177 18 C 0.193 3.807 19 N -0.577 5.577 20 C 0.095 3.905 21 C -0.166 4.166 22 C 0.512 3.488 23 O -0.498 6.498 24 C -0.186 4.186 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.025 0.975 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.410 0.590 31 H 0.145 0.855 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -28.179 -2.014 28.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.301 3.699 12 O -0.384 6.384 13 N -0.332 5.332 14 C 0.094 3.906 15 C -0.166 4.166 16 C -0.090 4.090 17 C -0.199 4.199 18 C 0.100 3.900 19 N -0.304 5.304 20 C -0.027 4.027 21 C -0.206 4.206 22 C 0.299 3.701 23 O -0.370 6.370 24 C -0.209 4.209 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.246 0.754 31 H 0.162 0.838 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.569 -27.424 -2.077 27.622 hybrid contribution 0.843 0.911 -0.002 1.241 sum 3.412 -26.513 -2.079 26.812 Atomic orbital electron populations 1.70008 1.06063 1.26538 1.50199 1.25028 0.94840 0.99289 0.95246 0.86521 0.80014 0.83748 0.77600 1.19725 1.20990 1.20994 1.21236 0.93006 0.90907 1.51403 0.92478 1.18924 0.93133 0.89300 0.98748 1.21922 1.00866 0.91117 1.02976 1.21863 0.88854 0.85337 0.73887 1.90667 1.14298 1.87131 1.46352 1.43969 1.10861 1.04226 1.74101 1.17572 0.93148 0.85527 0.94362 1.21387 0.95062 0.98693 1.01505 1.20850 0.99271 0.91801 0.97042 1.20563 0.94975 1.00443 1.03891 1.17207 0.92985 0.85886 0.93909 1.47578 1.20487 1.12509 1.49783 1.22709 0.98820 0.81061 1.00115 1.23420 0.97548 0.95679 1.03937 1.22287 0.81259 0.89231 0.77306 1.90741 1.32710 1.57082 1.56433 1.20557 1.02961 0.92627 1.04748 0.92966 0.95710 0.95673 0.89750 0.89739 0.75432 0.83774 0.85174 0.85956 0.88828 0.88830 0.85618 0.85660 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.94 9.11 -34.45 -0.31 -15.25 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.04 0.97 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.60 5.64 -27.88 -0.16 -2.75 16 11 C 0.51 9.88 7.67 -10.99 -0.08 9.80 16 12 O -0.51 -11.74 13.42 5.55 0.07 -11.66 16 13 N -0.69 -10.57 5.33 -9.88 -0.05 -10.63 16 14 C 0.19 2.93 6.30 -83.72 -0.53 2.40 16 15 C -0.15 -2.23 8.69 -39.36 -0.34 -2.57 16 16 C -0.07 -0.86 10.03 -39.64 -0.40 -1.25 16 17 C -0.18 -1.93 9.73 -39.36 -0.38 -2.31 16 18 C 0.19 2.37 6.75 -83.72 -0.56 1.81 16 19 N -0.58 -5.65 3.56 -138.61 -0.49 -6.14 16 20 C 0.09 0.42 8.33 -16.45 -0.14 0.29 16 21 C -0.17 -0.68 8.56 -28.00 -0.24 -0.92 16 22 C 0.51 5.29 8.89 -23.41 -0.21 5.08 16 23 O -0.50 -7.33 16.92 5.55 0.09 -7.23 16 24 C -0.19 -2.65 9.59 -39.20 -0.38 -3.02 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 30 H 0.41 5.01 8.82 -40.82 -0.36 4.65 16 31 H 0.14 2.49 6.23 -52.49 -0.33 2.17 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.12 0.97 7.84 -52.49 -0.41 0.55 16 34 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.13 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.13 1.97 6.88 -52.48 -0.36 1.61 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -37.03 331.32 -8.42 -45.45 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -4.80 Total: 1.45 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.95 Total: -6.27 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.19 Total: -43.44 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.17 Total: -18.90 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -37.03 -8.42 -45.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360468422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.755 kcal (2) G-P(sol) polarization free energy of solvation -37.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds