Wall clock time and date at job start Tue Mar 31 2020 06:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48500 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47289 * 300.00151 * 3 2 1 6 6 H 1.48504 * 109.46819 * 59.99969 * 3 2 1 7 7 C 1.37875 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99310 * 180.02562 * 7 2 1 9 9 C 1.50688 * 120.00497 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47576 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47262 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00529 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00021 * 179.97438 * 11 10 9 14 14 C 1.39921 * 120.00394 * 184.62492 * 13 11 10 15 15 C 1.38943 * 120.03643 * 324.92635 * 14 13 11 16 16 C 1.38131 * 120.07008 * 179.72126 * 15 14 13 17 17 C 1.38186 * 120.14406 * 359.97438 * 16 15 14 18 18 C 1.38896 * 120.06784 * 359.97438 * 17 16 15 19 19 N 1.39922 * 120.04040 * 179.97438 * 18 17 16 20 20 C 1.46358 * 134.65874 * 0.02562 * 19 18 17 21 21 C 1.52888 * 90.57197 * 179.97438 * 20 19 18 22 22 C 1.34597 * 134.67328 * 179.63670 * 19 18 17 23 23 O 1.21287 * 131.84658 * 0.02634 * 22 19 18 24 24 C 1.38730 * 120.03413 * 144.64336 * 14 13 11 25 25 H 0.97005 * 120.00077 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47157 * 59.99817 * 9 7 2 27 27 H 1.09003 * 109.47002 * 299.99910 * 9 7 2 28 28 H 1.09000 * 109.46829 * 59.99858 * 10 9 7 29 29 H 1.08995 * 109.47268 * 300.00359 * 10 9 7 30 30 H 0.97005 * 119.99579 * 4.63549 * 13 11 10 31 31 H 1.08002 * 119.96378 * 359.69171 * 15 14 13 32 32 H 1.08001 * 119.93253 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.96346 * 180.02562 * 17 16 15 34 34 H 1.08999 * 113.05658 * 295.43190 * 20 19 18 35 35 H 1.09002 * 113.05434 * 64.52631 * 20 19 18 36 36 H 1.09002 * 114.37715 * 113.39653 * 21 20 19 37 37 H 1.08995 * 114.38058 * 246.56786 * 21 20 19 38 38 H 1.08005 * 120.06772 * 0.25431 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4918 -4.9671 -0.0033 12 8 0.2789 -4.9672 -0.0033 13 7 2.1656 -6.1343 -0.0047 14 6 1.4694 -7.3441 -0.1029 15 6 0.2244 -7.4808 0.4985 16 6 -0.4660 -8.6728 0.3972 17 6 0.0783 -9.7327 -0.3027 18 6 1.3220 -9.6021 -0.9072 19 7 1.8729 -10.6759 -1.6153 20 6 1.4379 -12.0402 -1.9176 21 6 2.7282 -12.2953 -2.6969 22 6 3.0149 -10.8714 -2.3003 23 8 3.9593 -10.1438 -2.5234 24 6 2.0189 -8.4064 -0.8059 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5562 -0.8919 27 1 0.6241 -2.5574 0.8880 28 1 2.8719 -3.6051 0.8873 29 1 2.8720 -3.6036 -0.8926 30 1 3.1334 -6.1357 0.0625 31 1 -0.2037 -6.6543 1.0463 32 1 -1.4335 -8.7768 0.8659 33 1 -0.4643 -10.6633 -0.3805 34 1 1.3450 -12.6653 -1.0295 35 1 0.5468 -12.0751 -2.5444 36 1 3.3891 -13.0342 -2.2436 37 1 2.5858 -12.4409 -3.7677 38 1 2.9863 -8.3024 -1.2747 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360468422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:18 Heat of formation + Delta-G solvation = -40.855016 kcal Electronic energy + Delta-G solvation = -21373.551027 eV Core-core repulsion = 17987.820506 eV Total energy + Delta-G solvation = -3385.730521 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.30889 -41.45319 -39.45091 -37.78311 -35.92169 -35.59004 -33.30392 -32.93077 -30.89173 -28.88014 -27.76226 -25.56733 -24.53498 -23.85907 -22.79629 -21.50224 -20.05436 -18.99570 -18.66179 -17.96642 -17.67877 -17.47537 -17.22286 -17.03279 -16.59627 -16.44090 -15.56692 -15.13694 -14.71315 -14.53372 -14.28370 -14.26012 -14.10139 -13.98386 -13.32774 -13.09710 -12.95028 -12.89323 -12.78519 -12.49656 -12.45438 -11.98234 -11.71499 -11.68689 -11.31737 -11.16803 -11.02528 -10.73845 -10.59565 -9.48407 -8.87410 -8.20677 -6.34541 0.13025 0.20518 1.40778 1.40999 1.42194 1.55417 1.58662 1.71341 2.08217 2.41754 2.79137 2.82731 3.12621 3.63537 3.77877 3.91259 4.07822 4.18523 4.21500 4.35847 4.38056 4.46717 4.49016 4.55028 4.68776 4.82089 4.94498 4.99116 5.06602 5.24737 5.30276 5.46465 5.46863 5.58458 5.61061 5.72210 5.81872 6.00459 6.14300 6.36749 6.83150 6.97347 7.10935 7.35652 8.92240 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.032462 B = 0.002765 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.337651 B =10125.505132 C =10785.337518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.043 3.957 10 C -0.117 4.117 11 C 0.514 3.486 12 O -0.557 6.557 13 N -0.668 5.668 14 C 0.166 3.834 15 C -0.172 4.172 16 C -0.066 4.066 17 C -0.159 4.159 18 C 0.189 3.811 19 N -0.587 5.587 20 C 0.095 3.905 21 C -0.136 4.136 22 C 0.488 3.512 23 O -0.557 6.557 24 C -0.198 4.198 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.012 1.012 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.425 0.575 31 H 0.116 0.884 32 H 0.157 0.843 33 H 0.165 0.835 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 -31.070 -2.464 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.005 3.995 10 C -0.157 4.157 11 C 0.304 3.696 12 O -0.434 6.434 13 N -0.314 5.314 14 C 0.070 3.930 15 C -0.194 4.194 16 C -0.085 4.085 17 C -0.180 4.180 18 C 0.095 3.905 19 N -0.313 5.313 20 C -0.025 4.025 21 C -0.176 4.176 22 C 0.279 3.721 23 O -0.433 6.433 24 C -0.221 4.221 25 H 0.072 0.928 26 H 0.002 0.998 27 H 0.006 0.994 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.263 0.737 31 H 0.134 0.866 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.574 -30.406 -2.528 30.719 hybrid contribution 0.505 1.632 0.113 1.712 sum 4.079 -28.774 -2.416 29.162 Atomic orbital electron populations 1.70179 1.08252 1.27802 1.51436 1.26129 0.95752 1.03927 0.94605 0.85266 0.79239 0.78085 0.77612 1.17752 1.20611 1.20482 1.21720 0.94007 0.91562 1.50823 0.90651 1.18696 0.93621 0.92156 0.95013 1.21682 0.99489 0.89247 1.05272 1.21611 0.88157 0.86198 0.73639 1.90654 1.16088 1.87802 1.48831 1.43603 1.11496 1.03500 1.72849 1.17702 0.93713 0.85556 0.95988 1.21330 0.95698 0.99515 1.02825 1.21171 0.99921 0.90812 0.96612 1.20941 0.94121 1.01328 1.01569 1.17449 0.93298 0.86120 0.93606 1.48046 1.20865 1.13653 1.48744 1.23114 0.99658 0.78015 1.01670 1.23570 0.97214 0.91227 1.05555 1.23744 0.80377 0.91441 0.76574 1.90701 1.34877 1.59297 1.58452 1.20511 1.02844 0.93537 1.05176 0.92792 0.99799 0.99404 0.87095 0.87601 0.73693 0.86630 0.82557 0.81739 0.86105 0.86603 0.82910 0.83347 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.84 13.29 21.45 0.28 -59.55 16 2 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.25 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 C 0.04 2.41 4.26 29.85 0.13 2.53 16 10 C -0.12 -4.84 5.64 29.85 0.17 -4.67 16 11 C 0.51 20.94 7.67 87.65 0.67 21.61 16 12 O -0.56 -27.50 13.42 -3.05 -0.04 -27.54 16 13 N -0.67 -21.50 5.33 -303.56 -1.62 -23.12 16 14 C 0.17 5.32 6.30 38.14 0.24 5.56 16 15 C -0.17 -5.51 8.69 22.41 0.19 -5.32 16 16 C -0.07 -1.53 10.03 22.23 0.22 -1.31 16 17 C -0.16 -3.00 9.73 22.42 0.22 -2.78 16 18 C 0.19 4.38 6.75 38.14 0.26 4.64 16 19 N -0.59 -10.04 3.56 -710.93 -2.53 -12.57 16 20 C 0.09 0.39 8.33 78.42 0.65 1.04 16 21 C -0.14 -0.55 8.56 29.77 0.25 -0.29 16 22 C 0.49 9.34 8.89 79.69 0.71 10.05 16 23 O -0.56 -16.70 16.92 -3.05 -0.05 -16.75 16 24 C -0.20 -5.74 9.59 22.52 0.22 -5.52 16 25 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 26 H -0.02 -1.04 8.10 -2.39 -0.02 -1.06 16 27 H -0.01 -0.78 8.10 -2.39 -0.02 -0.80 16 28 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 29 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 30 H 0.42 10.64 8.82 -92.70 -0.82 9.82 16 31 H 0.12 4.35 6.23 -2.91 -0.02 4.33 16 32 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 33 H 0.17 1.71 7.84 -2.91 -0.02 1.69 16 34 H 0.12 -0.09 8.14 -2.39 -0.02 -0.10 16 35 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.12 3.76 6.88 -2.91 -0.02 3.74 16 Total: -1.00 -88.16 331.32 2.97 -85.20 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.27 Total: 12.86 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 4.63 Total: -5.44 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.87 Total: -95.24 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: -0.09 Total: -44.29 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -88.16 2.97 -85.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360468422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.340 kcal (2) G-P(sol) polarization free energy of solvation -88.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds