Wall clock time and date at job start Tue Mar 31 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 120.00226 * 2 1 4 4 H 1.48494 * 109.47162 * 269.99883 * 3 2 1 5 5 H 1.48504 * 109.47180 * 30.00175 * 3 2 1 6 6 H 1.48507 * 109.47049 * 149.99671 * 3 2 1 7 7 C 1.38959 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99518 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00019 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99526 * 179.97438 * 9 7 2 11 11 O 1.21282 * 120.00341 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99618 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47313 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 10 15 15 O 1.21543 * 120.00110 * 359.97438 * 14 13 12 16 16 C 1.47846 * 119.99806 * 179.97438 * 14 13 12 17 17 C 1.39594 * 120.14934 * 359.72412 * 16 14 13 18 18 C 1.37931 * 119.85715 * 179.76643 * 17 16 14 19 19 C 1.38383 * 120.14170 * 0.50907 * 18 17 16 20 20 C 1.38338 * 120.29470 * 359.74292 * 19 18 17 21 21 C 1.50700 * 119.92547 * 179.97438 * 20 19 18 22 22 C 1.52993 * 117.50062 * 8.63723 * 21 20 19 23 23 C 1.52996 * 117.49818 * 300.01407 * 21 20 19 24 24 C 1.37976 * 120.14251 * 359.97438 * 20 19 18 25 25 H 0.97002 * 119.99874 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47247 * 60.00376 * 12 10 9 28 28 H 1.09004 * 109.47103 * 300.00254 * 12 10 9 29 29 H 0.96999 * 119.99694 * 359.97438 * 13 12 10 30 30 H 1.08006 * 120.06718 * 359.97438 * 17 16 14 31 31 H 1.08001 * 119.92877 * 180.27188 * 18 17 16 32 32 H 1.08002 * 119.85001 * 179.76309 * 19 18 17 33 33 H 1.08998 * 115.54599 * 154.35205 * 21 20 19 34 34 H 1.09000 * 117.50119 * 0.02562 * 22 21 20 35 35 H 1.09003 * 117.49616 * 145.02205 * 22 21 20 36 36 H 1.08994 * 117.50278 * 214.98036 * 23 21 20 37 37 H 1.09001 * 117.49891 * 359.97438 * 23 21 20 38 38 H 1.07998 * 120.07116 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3707 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5606 -2.3707 0.0011 13 7 6.0489 -3.7519 0.0017 14 6 7.3740 -3.9982 0.0023 15 8 8.1639 -3.0744 0.0019 16 6 7.8667 -5.3921 0.0035 17 6 6.9623 -6.4554 0.0098 18 6 7.4286 -7.7535 0.0060 19 6 8.7898 -8.0029 0.0066 20 6 9.6915 -6.9538 0.0057 21 6 11.1720 -7.2350 0.0069 22 6 11.6159 -8.6852 -0.1946 23 6 11.7387 -8.0320 1.1835 24 6 9.2382 -5.6506 0.0036 25 1 -0.4850 0.8401 0.0004 26 1 3.8648 -0.3634 -0.0004 27 1 5.9240 -1.8561 0.8906 28 1 5.9239 -1.8576 -0.8894 29 1 5.4186 -4.4891 0.0024 30 1 5.8997 -6.2620 0.0142 31 1 6.7299 -8.5771 0.0064 32 1 9.1497 -9.0212 0.0075 33 1 11.7995 -6.4523 -0.4195 34 1 10.8371 -9.4359 -0.3285 35 1 12.5356 -8.8569 -0.7539 36 1 12.7391 -7.7742 1.5309 37 1 11.0407 -8.3527 1.9569 38 1 9.9432 -4.8325 0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565160271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:52 Heat of formation + Delta-G solvation = -20.142616 kcal Electronic energy + Delta-G solvation = -21170.134677 eV Core-core repulsion = 17785.302313 eV Total energy + Delta-G solvation = -3384.832364 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39284 -39.18338 -38.25334 -36.78251 -34.61124 -33.82734 -31.84620 -31.32257 -31.00313 -27.88379 -24.81910 -24.25001 -23.06893 -22.54043 -21.54149 -19.87910 -19.57406 -18.70154 -17.77967 -16.54901 -16.30020 -15.70952 -15.43060 -15.40982 -15.03215 -14.81012 -14.29464 -14.08275 -14.01650 -13.76974 -13.15914 -12.95337 -12.60753 -12.37506 -12.19761 -12.15757 -12.10726 -11.64683 -11.26070 -11.24639 -10.98293 -10.76898 -10.65990 -10.08690 -9.91626 -9.72312 -9.18810 -8.92316 -8.80904 -8.78796 -8.32982 -6.42870 -3.95544 0.71397 1.13576 2.79761 2.98160 3.02862 3.10676 3.20656 3.46398 3.53858 3.85400 4.01789 4.21267 4.47608 4.51644 4.58899 4.64942 4.71993 4.85870 4.95896 5.09537 5.11912 5.27240 5.35613 5.46228 5.59819 5.66805 5.67654 5.73207 5.76563 5.78009 5.82647 6.17097 6.21533 6.31395 6.49027 6.68747 7.41624 7.67637 7.97668 8.28859 8.43192 8.79239 9.27335 9.60384 10.69183 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.043498 B = 0.002684 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.556638 B =10428.529907 C =10984.773884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.437 3.563 11 O -0.580 6.580 12 C 0.106 3.894 13 N -0.702 5.702 14 C 0.556 3.444 15 O -0.546 6.546 16 C -0.125 4.125 17 C -0.088 4.088 18 C -0.122 4.122 19 C -0.100 4.100 20 C -0.064 4.064 21 C -0.117 4.117 22 C -0.177 4.177 23 C -0.169 4.169 24 C -0.054 4.054 25 H 0.276 0.724 26 H 0.375 0.625 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.412 0.588 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.913 -13.817 0.314 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.223 3.777 11 O -0.464 6.464 12 C -0.022 4.022 13 N -0.356 5.356 14 C 0.343 3.657 15 O -0.425 6.425 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.140 4.140 19 C -0.118 4.118 20 C -0.064 4.064 21 C -0.135 4.135 22 C -0.214 4.214 23 C -0.206 4.206 24 C -0.073 4.073 25 H 0.086 0.914 26 H 0.208 0.792 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.251 0.749 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 20.791 -13.701 0.315 24.901 hybrid contribution 0.121 1.115 0.002 1.122 sum 20.913 -12.586 0.316 24.410 Atomic orbital electron populations 1.69615 1.05717 1.27851 1.48026 1.25074 0.95546 0.98199 0.97094 0.86668 0.79922 0.83732 0.79159 1.19368 1.19950 1.19210 1.19443 0.78924 0.96815 1.48726 0.86053 1.42120 1.07727 1.06128 1.65292 1.19609 0.87994 0.84916 0.85135 1.90531 1.69183 1.30911 1.55774 1.21010 0.93864 0.83786 1.03540 1.45619 1.06852 1.09360 1.73807 1.18216 0.82168 0.88607 0.76697 1.90747 1.55494 1.45597 1.50676 1.19916 0.94330 0.92804 1.05712 1.21473 0.99816 0.92390 0.96949 1.21087 0.95484 0.96706 1.00717 1.21228 0.93037 0.98963 0.98544 1.19057 0.93458 0.92892 1.01022 1.21020 0.92582 0.95681 1.04229 1.23076 1.03304 0.95056 0.99955 1.23040 1.02449 1.03459 0.91674 1.21029 0.94330 0.96388 0.95565 0.91353 0.79207 0.89504 0.89496 0.74883 0.84980 0.85195 0.85642 0.86690 0.88319 0.88369 0.88365 0.88495 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.84 13.96 55.50 0.77 -24.06 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 18.93 27.74 -169.99 -4.71 14.22 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 7 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 9 N -0.58 -13.33 5.09 -10.96 -0.06 -13.39 16 10 C 0.44 9.60 7.85 -10.99 -0.09 9.51 16 11 O -0.58 -14.53 15.24 5.56 0.08 -14.45 16 12 C 0.11 1.84 6.15 -5.20 -0.03 1.81 16 13 N -0.70 -11.51 5.48 -62.43 -0.34 -11.86 16 14 C 0.56 8.95 7.77 -12.33 -0.10 8.85 16 15 O -0.55 -10.13 16.35 5.33 0.09 -10.04 16 16 C -0.12 -1.67 5.87 -104.97 -0.62 -2.28 16 17 C -0.09 -1.01 9.54 -39.19 -0.37 -1.38 16 18 C -0.12 -1.17 10.03 -39.64 -0.40 -1.57 16 19 C -0.10 -0.90 9.29 -39.49 -0.37 -1.27 16 20 C -0.06 -0.64 5.61 -104.68 -0.59 -1.23 16 21 C -0.12 -0.94 6.04 -91.78 -0.55 -1.49 16 22 C -0.18 -1.11 9.86 -26.74 -0.26 -1.37 16 23 C -0.17 -1.13 10.16 -26.74 -0.27 -1.40 16 24 C -0.05 -0.66 9.28 -39.18 -0.36 -1.02 16 25 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 27 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 29 H 0.41 6.58 5.47 -40.82 -0.22 6.36 16 30 H 0.13 1.45 6.41 -52.48 -0.34 1.11 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.13 0.85 6.00 -52.49 -0.32 0.53 16 33 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.56 6.17 -51.93 -0.32 0.24 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.14 1.65 7.65 -52.49 -0.40 1.24 16 LS Contribution 327.77 15.07 4.94 4.94 Total: -1.00 -32.31 327.77 -7.83 -40.14 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -4.35 Total: 14.91 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -4.26 Total: -0.41 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.38 Total: -49.31 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.17 Total: -24.49 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.31 -7.83 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565160271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.998 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds