Wall clock time and date at job start Tue Mar 31 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86799 * 120.00226 * 2 1 4 4 H 1.48494 * 109.47162 * 269.99883 * 3 2 1 5 5 H 1.48504 * 109.47180 * 30.00175 * 3 2 1 6 6 H 1.48507 * 109.47049 * 149.99671 * 3 2 1 7 7 C 1.38959 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99518 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00019 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99526 * 179.97438 * 9 7 2 11 11 O 1.21282 * 120.00341 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99618 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47313 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 10 15 15 O 1.21543 * 120.00110 * 359.97438 * 14 13 12 16 16 C 1.47846 * 119.99806 * 179.97438 * 14 13 12 17 17 C 1.39594 * 120.14934 * 359.72412 * 16 14 13 18 18 C 1.37931 * 119.85715 * 179.76643 * 17 16 14 19 19 C 1.38383 * 120.14170 * 0.50907 * 18 17 16 20 20 C 1.38338 * 120.29470 * 359.74292 * 19 18 17 21 21 C 1.50700 * 119.92547 * 179.97438 * 20 19 18 22 22 C 1.52993 * 117.50062 * 8.63723 * 21 20 19 23 23 C 1.52996 * 117.49818 * 300.01407 * 21 20 19 24 24 C 1.37976 * 120.14251 * 359.97438 * 20 19 18 25 25 H 0.97002 * 119.99874 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.47247 * 60.00376 * 12 10 9 28 28 H 1.09004 * 109.47103 * 300.00254 * 12 10 9 29 29 H 0.96999 * 119.99694 * 359.97438 * 13 12 10 30 30 H 1.08006 * 120.06718 * 359.97438 * 17 16 14 31 31 H 1.08001 * 119.92877 * 180.27188 * 18 17 16 32 32 H 1.08002 * 119.85001 * 179.76309 * 19 18 17 33 33 H 1.08998 * 115.54599 * 154.35205 * 21 20 19 34 34 H 1.09000 * 117.50119 * 0.02562 * 22 21 20 35 35 H 1.09003 * 117.49616 * 145.02205 * 22 21 20 36 36 H 1.08994 * 117.50278 * 214.98036 * 23 21 20 37 37 H 1.09001 * 117.49891 * 359.97438 * 23 21 20 38 38 H 1.07998 * 120.07116 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3707 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5606 -2.3707 0.0011 13 7 6.0489 -3.7519 0.0017 14 6 7.3740 -3.9982 0.0023 15 8 8.1639 -3.0744 0.0019 16 6 7.8667 -5.3921 0.0035 17 6 6.9623 -6.4554 0.0098 18 6 7.4286 -7.7535 0.0060 19 6 8.7898 -8.0029 0.0066 20 6 9.6915 -6.9538 0.0057 21 6 11.1720 -7.2350 0.0069 22 6 11.6159 -8.6852 -0.1946 23 6 11.7387 -8.0320 1.1835 24 6 9.2382 -5.6506 0.0036 25 1 -0.4850 0.8401 0.0004 26 1 3.8648 -0.3634 -0.0004 27 1 5.9240 -1.8561 0.8906 28 1 5.9239 -1.8576 -0.8894 29 1 5.4186 -4.4891 0.0024 30 1 5.8997 -6.2620 0.0142 31 1 6.7299 -8.5771 0.0064 32 1 9.1497 -9.0212 0.0075 33 1 11.7995 -6.4523 -0.4195 34 1 10.8371 -9.4359 -0.3285 35 1 12.5356 -8.8569 -0.7539 36 1 12.7391 -7.7742 1.5309 37 1 11.0407 -8.3527 1.9569 38 1 9.9432 -4.8325 0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565160271.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:51 Heat of formation + Delta-G solvation = -42.014143 kcal Electronic energy + Delta-G solvation = -21171.083097 eV Core-core repulsion = 17785.302313 eV Total energy + Delta-G solvation = -3385.780785 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48801 -40.49064 -39.69402 -37.48466 -36.34760 -35.45257 -33.86291 -32.24631 -31.84181 -29.38536 -26.48857 -25.20080 -23.96586 -23.13504 -22.42112 -21.52086 -20.94523 -20.42426 -18.89106 -17.77723 -17.37849 -17.08029 -16.84728 -16.54153 -16.50457 -15.86702 -15.61820 -15.38656 -15.03690 -14.79362 -14.66972 -14.31639 -14.06589 -13.96658 -13.52619 -13.14282 -12.98243 -12.85623 -12.46336 -12.20246 -12.01744 -11.98563 -11.62429 -11.60254 -11.37105 -11.11219 -10.69622 -10.38835 -10.31288 -9.94433 -9.57886 -8.47170 -6.09329 -0.20342 0.32173 1.29959 1.32877 1.42874 1.71588 1.78411 1.90723 2.19198 2.69347 2.82069 3.08822 3.14821 3.52090 3.63534 3.91683 3.94602 3.98639 4.11267 4.16008 4.16456 4.33632 4.35440 4.36292 4.54680 4.79839 4.88320 4.91492 5.07696 5.12869 5.14859 5.27606 5.31669 5.41411 5.46560 5.54870 5.85890 5.88784 6.38875 6.46258 6.75764 7.01613 7.26613 7.74721 8.69108 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.043498 B = 0.002684 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.556638 B =10428.529907 C =10984.773884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.576 5.576 10 C 0.445 3.555 11 O -0.614 6.614 12 C 0.116 3.884 13 N -0.705 5.705 14 C 0.558 3.442 15 O -0.575 6.575 16 C -0.146 4.146 17 C -0.097 4.097 18 C -0.119 4.119 19 C -0.092 4.092 20 C -0.063 4.063 21 C -0.138 4.138 22 C -0.164 4.164 23 C -0.167 4.167 24 C -0.068 4.068 25 H 0.282 0.718 26 H 0.392 0.608 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.413 0.587 30 H 0.132 0.868 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.721 -14.275 0.354 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.208 4.208 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.216 5.216 10 C 0.232 3.768 11 O -0.500 6.500 12 C -0.011 4.011 13 N -0.359 5.359 14 C 0.347 3.653 15 O -0.456 6.456 16 C -0.149 4.149 17 C -0.116 4.116 18 C -0.137 4.137 19 C -0.110 4.110 20 C -0.063 4.063 21 C -0.156 4.156 22 C -0.201 4.201 23 C -0.204 4.204 24 C -0.087 4.087 25 H 0.091 0.909 26 H 0.228 0.772 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.253 0.747 30 H 0.149 0.851 31 H 0.175 0.825 32 H 0.173 0.827 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 23.620 -14.180 0.356 27.551 hybrid contribution -0.740 1.052 -0.011 1.286 sum 22.880 -13.128 0.345 26.381 Atomic orbital electron populations 1.69775 1.08007 1.29499 1.49094 1.26073 0.96451 1.02604 0.95673 0.85445 0.79565 0.77031 0.80089 1.18065 1.19753 1.15649 1.19033 0.80881 0.95320 1.50855 0.91762 1.41921 1.06194 1.07390 1.66118 1.20433 0.89895 0.83946 0.82504 1.90519 1.70703 1.32292 1.56474 1.20942 0.89818 0.84992 1.05396 1.45652 1.07218 1.08922 1.74120 1.18615 0.81494 0.89603 0.75582 1.90718 1.55962 1.46738 1.52180 1.19794 0.95191 0.91604 1.08333 1.21561 0.99582 0.92989 0.97449 1.21421 0.96399 0.96476 0.99358 1.21596 0.92635 1.00097 0.96668 1.19295 0.94937 0.92196 0.99845 1.21059 0.91340 0.97097 1.06092 1.23198 1.03917 0.93600 0.99369 1.23113 1.02793 1.02753 0.91696 1.21070 0.93696 0.97358 0.96556 0.90871 0.77184 0.87588 0.87496 0.74741 0.85061 0.82527 0.82720 0.86726 0.87370 0.87131 0.87390 0.88592 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.20 13.96 21.67 0.30 -53.90 16 2 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 3 Si 0.96 38.10 27.74 68.60 1.90 40.01 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.23 -7.93 6.52 99.48 0.65 -7.28 16 7 C -0.33 -18.84 10.16 84.04 0.85 -17.99 16 8 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16 9 N -0.58 -26.60 5.09 -306.99 -1.56 -28.16 16 10 C 0.44 19.54 7.85 87.66 0.69 20.23 16 11 O -0.61 -31.69 15.24 -3.04 -0.05 -31.74 16 12 C 0.12 3.90 6.15 85.63 0.53 4.43 16 13 N -0.71 -22.92 5.48 -469.72 -2.57 -25.49 16 14 C 0.56 17.91 7.77 86.79 0.67 18.58 16 15 O -0.57 -21.21 16.35 -3.85 -0.06 -21.28 16 16 C -0.15 -3.89 5.87 -20.09 -0.12 -4.01 16 17 C -0.10 -2.17 9.54 22.52 0.21 -1.96 16 18 C -0.12 -2.01 10.03 22.23 0.22 -1.78 16 19 C -0.09 -1.42 9.29 22.33 0.21 -1.21 16 20 C -0.06 -1.16 5.61 -19.90 -0.11 -1.27 16 21 C -0.14 -1.94 6.04 -11.54 -0.07 -2.01 16 22 C -0.16 -1.54 9.86 30.59 0.30 -1.24 16 23 C -0.17 -1.81 10.16 30.59 0.31 -1.50 16 24 C -0.07 -1.63 9.28 22.53 0.21 -1.42 16 25 H 0.28 15.08 8.31 -92.71 -0.77 14.31 16 26 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 27 H 0.11 3.23 8.14 -2.39 -0.02 3.22 16 28 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 29 H 0.41 13.33 5.47 -92.71 -0.51 12.83 16 30 H 0.13 2.87 6.41 -2.91 -0.02 2.85 16 31 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.16 1.46 6.00 -2.91 -0.02 1.44 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.11 0.80 6.17 -2.39 -0.01 0.79 16 35 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.13 3.16 7.65 -2.91 -0.02 3.14 16 Total: -1.00 -73.53 327.77 2.35 -71.18 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: 0.02 Total: 40.48 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 4.38 Total: 8.90 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -3.83 Total: -107.56 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -0.11 Total: -53.01 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.01 kcal Total: -73.53 2.35 -71.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565160271.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.165 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds