Wall clock time and date at job start Tue Mar 31 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48501 * 109.46872 * 274.99083 * 3 2 1 5 5 H 1.48500 * 109.46965 * 34.99107 * 3 2 1 6 6 H 1.48502 * 109.47227 * 154.99390 * 3 2 1 7 7 C 1.39930 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99872 * 151.88797 * 7 2 1 9 9 C 1.41405 * 120.00292 * 331.88825 * 7 2 1 10 10 C 1.40779 * 120.20694 * 337.88583 * 9 7 2 11 11 C 1.37640 * 119.88394 * 179.97438 * 10 9 7 12 12 C 1.38535 * 120.32481 * 359.74507 * 11 10 9 13 13 C 1.39255 * 120.42519 * 0.51548 * 12 11 10 14 14 N 1.39934 * 119.94634 * 179.76490 * 13 12 11 15 15 C 1.34777 * 119.99813 * 321.01903 * 14 13 12 16 16 O 1.21283 * 120.00258 * 354.72232 * 15 14 13 17 17 C 1.50704 * 119.99949 * 174.72253 * 15 14 13 18 18 H 1.08995 * 112.90566 * 48.74677 * 17 15 14 19 19 C 1.53779 * 113.61266 * 277.49850 * 17 15 14 20 20 C 1.53780 * 87.07963 * 220.01565 * 19 17 15 21 21 C 1.53780 * 87.08205 * 25.43470 * 20 19 17 22 22 H 1.09002 * 113.61923 * 89.19754 * 21 20 19 23 23 C 1.50700 * 113.61322 * 220.02092 * 21 20 19 24 24 N 1.34778 * 119.99740 * 280.75934 * 23 21 20 25 25 O 1.21280 * 120.00239 * 100.49549 * 23 21 20 26 26 C 1.38281 * 120.10194 * 359.48668 * 13 12 11 27 27 H 0.97005 * 120.00133 * 359.97438 * 1 2 3 28 28 H 1.07991 * 120.05891 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.84072 * 179.97438 * 11 10 9 30 30 H 1.07991 * 119.78786 * 180.27439 * 12 11 10 31 31 H 0.96998 * 120.00311 * 141.02611 * 14 13 12 32 32 H 1.09002 * 113.61651 * 105.46692 * 19 17 15 33 33 H 1.08996 * 113.69099 * 334.57803 * 19 17 15 34 34 H 1.08998 * 113.61608 * 270.88510 * 20 19 17 35 35 H 1.08998 * 113.61316 * 139.97871 * 20 19 17 36 36 H 0.97000 * 120.00165 * 179.72154 * 24 23 21 37 37 H 0.97002 * 120.00187 * 359.73906 * 24 23 21 38 38 H 1.08005 * 120.15872 * 180.28379 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3843 2.1073 -1.3948 5 1 1.4964 2.6199 0.8029 6 1 3.5886 1.4120 0.5918 7 6 2.0079 -1.2118 -0.0005 8 1 2.9924 -1.2668 -0.4413 9 6 1.4260 -2.3645 0.5759 10 6 0.4029 -2.2375 1.5346 11 6 -0.1592 -3.3639 2.0910 12 6 0.2732 -4.6233 1.7086 13 6 1.2881 -4.7642 0.7656 14 7 1.7205 -6.0410 0.3902 15 6 1.8278 -7.0152 1.3155 16 8 1.6424 -6.7620 2.4870 17 6 2.1781 -8.4191 0.8943 18 1 3.0381 -8.4594 0.2259 19 6 0.9716 -9.2317 0.3953 20 6 1.5682 -10.4321 1.1489 21 6 2.2616 -9.4111 2.0664 22 1 1.6619 -9.1212 2.9291 23 6 3.6723 -9.7918 2.4355 24 7 3.8928 -10.7046 3.4023 25 8 4.6089 -9.2803 1.8594 26 6 1.8652 -3.6445 0.1952 27 1 -0.4850 0.8401 0.0004 28 1 0.0597 -1.2580 1.8328 29 1 -0.9438 -3.2657 2.8267 30 1 -0.1769 -5.5013 2.1476 31 1 1.9431 -6.2250 -0.5358 32 1 0.9503 -9.3621 -0.6866 33 1 0.0178 -8.8925 0.7995 34 1 2.2615 -11.0227 0.5502 35 1 0.8225 -11.0417 1.6592 36 1 4.8007 -10.9526 3.6372 37 1 3.1437 -11.1137 3.8631 38 1 2.6492 -3.7528 -0.5397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572059560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:31 Heat of formation + Delta-G solvation = -43.119977 kcal Electronic energy + Delta-G solvation = -21928.041044 eV Core-core repulsion = 18542.212307 eV Total energy + Delta-G solvation = -3385.828737 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.85163 -39.18757 -37.61677 -36.61590 -34.37177 -33.78229 -33.05724 -29.83776 -28.73928 -26.98349 -26.40357 -25.18967 -22.01242 -21.39986 -20.87764 -19.93437 -19.26261 -17.90873 -17.68070 -17.20529 -16.52454 -15.56684 -15.11713 -14.94211 -14.86919 -14.64017 -14.24507 -14.20312 -13.18543 -13.05968 -12.92654 -12.73732 -12.26015 -12.12020 -11.70852 -11.60700 -11.42379 -11.12557 -11.04801 -10.77371 -10.66723 -10.51195 -10.10951 -9.92632 -9.86506 -9.68748 -9.35950 -9.14176 -8.81294 -7.48221 -6.92234 -6.84439 -4.31722 2.49691 2.62510 2.83057 3.08406 3.12229 3.21602 3.28204 3.37901 3.75911 3.94443 4.16498 4.32273 4.49744 4.60225 4.64658 5.01090 5.23258 5.42773 5.46672 5.51951 5.64011 5.71971 5.75920 6.13132 6.31704 6.56521 6.59265 6.80449 6.94686 7.03158 7.08587 7.14151 7.23043 7.62229 7.72843 7.98501 8.04657 8.11846 8.14881 8.34405 8.59268 8.74919 8.89914 8.99628 10.12603 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.031981 B = 0.003245 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.309302 B = 8626.978196 C = 8922.539336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.085 3.915 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.470 4.470 8 H 0.079 0.921 9 C 0.125 3.875 10 C -0.177 4.177 11 C -0.091 4.091 12 C -0.230 4.230 13 C 0.158 3.842 14 N -0.665 5.665 15 C 0.519 3.481 16 O -0.527 6.527 17 C -0.115 4.115 18 H 0.124 0.876 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.118 4.118 22 H 0.129 0.871 23 C 0.529 3.471 24 N -0.856 5.856 25 O -0.541 6.541 26 C -0.247 4.247 27 H 0.282 0.718 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.400 0.600 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.399 0.601 37 H 0.401 0.599 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 -18.437 1.600 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.498 4.498 8 H 0.097 0.903 9 C 0.122 3.878 10 C -0.196 4.196 11 C -0.110 4.110 12 C -0.251 4.251 13 C 0.066 3.934 14 N -0.309 5.309 15 C 0.305 3.695 16 O -0.402 6.402 17 C -0.136 4.136 18 H 0.142 0.858 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.139 4.139 22 H 0.147 0.853 23 C 0.314 3.686 24 N -0.419 5.419 25 O -0.417 6.417 26 C -0.269 4.269 27 H 0.092 0.908 28 H 0.127 0.873 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.234 0.766 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.230 0.770 37 H 0.229 0.771 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.068 -17.699 1.939 17.837 hybrid contribution 0.520 0.457 -0.076 0.696 sum 1.588 -17.242 1.863 17.415 Atomic orbital electron populations 1.69902 1.07893 1.29566 1.32915 1.25889 0.94447 1.01347 0.91783 0.86464 0.81313 0.80907 0.79067 1.19568 1.19957 1.18238 1.19481 1.02973 0.92833 1.34542 0.90268 1.17323 0.90056 0.91142 0.89238 1.21161 1.01566 0.96986 0.99909 1.20512 0.98841 0.92717 0.98931 1.20149 1.02458 0.96462 1.06040 1.17416 0.95132 0.82189 0.98615 1.43472 1.66102 1.10078 1.11216 1.20281 0.76981 0.86164 0.86029 1.90693 1.49299 1.82649 1.17597 1.22667 1.01047 0.91259 0.98667 0.85833 1.22811 0.97187 0.94787 1.01242 1.22817 0.99602 0.96069 0.97514 1.22699 0.94037 0.97637 0.99550 0.85279 1.20483 0.91383 0.77983 0.78706 1.43839 1.12184 1.45255 1.40603 1.90747 1.44983 1.53189 1.52746 1.20688 1.06776 0.91478 1.07961 0.90756 0.87260 0.89133 0.88743 0.76551 0.89877 0.89013 0.89408 0.90001 0.77034 0.77057 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.13 11.48 55.55 0.64 -19.49 16 2 C 0.09 2.16 4.90 -17.35 -0.08 2.07 16 3 Si 0.90 18.68 29.64 -169.99 -5.04 13.64 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.47 -12.62 8.99 -37.74 -0.34 -12.96 16 8 H 0.08 2.06 7.98 -52.48 -0.42 1.64 16 9 C 0.13 3.41 5.57 -106.85 -0.60 2.82 16 10 C -0.18 -4.72 8.76 -38.84 -0.34 -5.06 16 11 C -0.09 -2.25 10.02 -39.69 -0.40 -2.65 16 12 C -0.23 -5.58 8.66 -39.09 -0.34 -5.92 16 13 C 0.16 3.69 6.15 -83.77 -0.52 3.18 16 14 N -0.67 -12.41 5.32 -9.91 -0.05 -12.47 16 15 C 0.52 9.30 7.06 -10.98 -0.08 9.23 16 16 O -0.53 -11.41 13.98 5.55 0.08 -11.34 16 17 C -0.11 -1.47 3.46 -90.96 -0.31 -1.78 16 18 H 0.12 1.57 7.47 -51.93 -0.39 1.18 16 19 C -0.12 -1.14 7.63 -25.92 -0.20 -1.33 16 20 C -0.12 -0.93 7.63 -25.92 -0.20 -1.12 16 21 C -0.12 -1.30 3.47 -90.96 -0.32 -1.61 16 22 H 0.13 1.49 7.44 -51.93 -0.39 1.10 16 23 C 0.53 6.44 7.62 -10.98 -0.08 6.35 16 24 N -0.86 -6.53 8.87 31.22 0.28 -6.25 16 25 O -0.54 -9.02 16.76 5.56 0.09 -8.93 16 26 C -0.25 -6.21 9.71 -38.68 -0.38 -6.59 16 27 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 28 H 0.11 2.96 6.38 -52.49 -0.33 2.63 16 29 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 30 H 0.09 2.22 6.82 -52.49 -0.36 1.86 16 31 H 0.40 6.08 8.83 -40.82 -0.36 5.72 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.40 2.65 8.93 -40.82 -0.36 2.29 16 37 H 0.40 1.81 8.83 -40.82 -0.36 1.45 16 38 H 0.09 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -34.26 326.55 -7.90 -42.15 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -4.64 Total: 13.14 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -4.17 Total: -15.38 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.86 Total: -38.21 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.17 Total: -20.27 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.04 Total: 13.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.26 -7.90 -42.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572059560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.969 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds