Wall clock time and date at job start Tue Mar 31 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48501 * 109.46872 * 274.99083 * 3 2 1 5 5 H 1.48500 * 109.46965 * 34.99107 * 3 2 1 6 6 H 1.48502 * 109.47227 * 154.99390 * 3 2 1 7 7 C 1.39930 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99872 * 151.88797 * 7 2 1 9 9 C 1.41405 * 120.00292 * 331.88825 * 7 2 1 10 10 C 1.40779 * 120.20694 * 337.88583 * 9 7 2 11 11 C 1.37640 * 119.88394 * 179.97438 * 10 9 7 12 12 C 1.38535 * 120.32481 * 359.74507 * 11 10 9 13 13 C 1.39255 * 120.42519 * 0.51548 * 12 11 10 14 14 N 1.39934 * 119.94634 * 179.76490 * 13 12 11 15 15 C 1.34777 * 119.99813 * 321.01903 * 14 13 12 16 16 O 1.21283 * 120.00258 * 354.72232 * 15 14 13 17 17 C 1.50704 * 119.99949 * 174.72253 * 15 14 13 18 18 H 1.08995 * 112.90566 * 48.74677 * 17 15 14 19 19 C 1.53779 * 113.61266 * 277.49850 * 17 15 14 20 20 C 1.53780 * 87.07963 * 220.01565 * 19 17 15 21 21 C 1.53780 * 87.08205 * 25.43470 * 20 19 17 22 22 H 1.09002 * 113.61923 * 89.19754 * 21 20 19 23 23 C 1.50700 * 113.61322 * 220.02092 * 21 20 19 24 24 N 1.34778 * 119.99740 * 280.75934 * 23 21 20 25 25 O 1.21280 * 120.00239 * 100.49549 * 23 21 20 26 26 C 1.38281 * 120.10194 * 359.48668 * 13 12 11 27 27 H 0.97005 * 120.00133 * 359.97438 * 1 2 3 28 28 H 1.07991 * 120.05891 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.84072 * 179.97438 * 11 10 9 30 30 H 1.07991 * 119.78786 * 180.27439 * 12 11 10 31 31 H 0.96998 * 120.00311 * 141.02611 * 14 13 12 32 32 H 1.09002 * 113.61651 * 105.46692 * 19 17 15 33 33 H 1.08996 * 113.69099 * 334.57803 * 19 17 15 34 34 H 1.08998 * 113.61608 * 270.88510 * 20 19 17 35 35 H 1.08998 * 113.61316 * 139.97871 * 20 19 17 36 36 H 0.97000 * 120.00165 * 179.72154 * 24 23 21 37 37 H 0.97002 * 120.00187 * 359.73906 * 24 23 21 38 38 H 1.08005 * 120.15872 * 180.28379 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3843 2.1073 -1.3948 5 1 1.4964 2.6199 0.8029 6 1 3.5886 1.4120 0.5918 7 6 2.0079 -1.2118 -0.0005 8 1 2.9924 -1.2668 -0.4413 9 6 1.4260 -2.3645 0.5759 10 6 0.4029 -2.2375 1.5346 11 6 -0.1592 -3.3639 2.0910 12 6 0.2732 -4.6233 1.7086 13 6 1.2881 -4.7642 0.7656 14 7 1.7205 -6.0410 0.3902 15 6 1.8278 -7.0152 1.3155 16 8 1.6424 -6.7620 2.4870 17 6 2.1781 -8.4191 0.8943 18 1 3.0381 -8.4594 0.2259 19 6 0.9716 -9.2317 0.3953 20 6 1.5682 -10.4321 1.1489 21 6 2.2616 -9.4111 2.0664 22 1 1.6619 -9.1212 2.9291 23 6 3.6723 -9.7918 2.4355 24 7 3.8928 -10.7046 3.4023 25 8 4.6089 -9.2803 1.8594 26 6 1.8652 -3.6445 0.1952 27 1 -0.4850 0.8401 0.0004 28 1 0.0597 -1.2580 1.8328 29 1 -0.9438 -3.2657 2.8267 30 1 -0.1769 -5.5013 2.1476 31 1 1.9431 -6.2250 -0.5358 32 1 0.9503 -9.3621 -0.6866 33 1 0.0178 -8.8925 0.7995 34 1 2.2615 -11.0227 0.5502 35 1 0.8225 -11.0417 1.6592 36 1 4.8007 -10.9526 3.6372 37 1 3.1437 -11.1137 3.8631 38 1 2.6492 -3.7528 -0.5397 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572059560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:30 Heat of formation + Delta-G solvation = -68.185141 kcal Electronic energy + Delta-G solvation = -21929.127951 eV Core-core repulsion = 18542.212307 eV Total energy + Delta-G solvation = -3386.915644 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95562 -40.54101 -39.13007 -37.90811 -36.14027 -34.89797 -34.61250 -31.81576 -30.43727 -27.82353 -27.60764 -27.12163 -23.42123 -22.81509 -22.39865 -21.43785 -20.29275 -19.44066 -18.88545 -18.32997 -17.51413 -17.42048 -16.75791 -16.61783 -16.11052 -15.97578 -15.48984 -15.39458 -14.93431 -14.68734 -14.12757 -13.95251 -13.77778 -13.53474 -13.28074 -12.99460 -12.82276 -12.52828 -12.52294 -12.29967 -12.07993 -11.93007 -11.57657 -11.49650 -11.15151 -10.89821 -10.78332 -10.67121 -10.58421 -9.47831 -8.80725 -8.75181 -6.34915 0.84889 0.96558 1.37757 1.46461 1.55424 1.59036 1.73927 2.18793 2.22914 2.65487 2.68596 3.25955 3.51501 3.67585 3.71315 3.78459 4.07252 4.31361 4.41631 4.63225 4.65131 4.68712 4.86837 4.96579 4.98597 5.00968 5.03595 5.11761 5.20424 5.30967 5.38607 5.72914 5.84814 5.89258 6.02864 6.07203 6.27090 6.44720 6.58243 6.69631 6.89078 6.96206 7.28427 7.34027 8.24641 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.031981 B = 0.003245 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.309302 B = 8626.978196 C = 8922.539336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.047 3.953 3 Si 0.976 3.024 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.505 4.505 8 H 0.077 0.923 9 C 0.099 3.901 10 C -0.204 4.204 11 C -0.092 4.092 12 C -0.241 4.241 13 C 0.166 3.834 14 N -0.661 5.661 15 C 0.516 3.484 16 O -0.567 6.567 17 C -0.120 4.120 18 H 0.126 0.874 19 C -0.114 4.114 20 C -0.098 4.098 21 C -0.121 4.121 22 H 0.124 0.876 23 C 0.524 3.476 24 N -0.833 5.833 25 O -0.595 6.595 26 C -0.266 4.266 27 H 0.292 0.708 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.417 0.583 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.406 0.594 37 H 0.419 0.581 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 -20.075 1.373 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.171 4.171 3 Si 0.796 3.204 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.533 4.533 8 H 0.095 0.905 9 C 0.096 3.904 10 C -0.224 4.224 11 C -0.111 4.111 12 C -0.262 4.262 13 C 0.073 3.927 14 N -0.306 5.306 15 C 0.305 3.695 16 O -0.446 6.446 17 C -0.141 4.141 18 H 0.144 0.856 19 C -0.152 4.152 20 C -0.136 4.136 21 C -0.143 4.143 22 H 0.142 0.858 23 C 0.309 3.691 24 N -0.396 5.396 25 O -0.475 6.475 26 C -0.288 4.288 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.254 0.746 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.130 0.870 36 H 0.238 0.762 37 H 0.250 0.750 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.921 -19.414 1.719 19.512 hybrid contribution 0.534 0.864 0.039 1.016 sum 1.455 -18.550 1.758 18.690 Atomic orbital electron populations 1.69917 1.09319 1.31202 1.32611 1.26742 0.95197 1.04505 0.90673 0.85309 0.79411 0.76059 0.79663 1.18220 1.18782 1.18573 1.19745 1.03321 0.94181 1.36027 0.90462 1.17695 0.90643 0.92292 0.89748 1.21119 1.02918 0.97034 1.01290 1.20776 0.98937 0.92485 0.98876 1.20322 1.02911 0.96453 1.06481 1.17493 0.94032 0.83864 0.97309 1.43493 1.65925 1.08643 1.12553 1.21278 0.75361 0.87633 0.85210 1.90664 1.51005 1.83567 1.19331 1.22827 1.02990 0.88020 1.00290 0.85620 1.22857 0.95242 0.94245 1.02855 1.22797 0.99590 0.95136 0.96070 1.22781 0.93701 0.98464 0.99364 0.85800 1.20739 0.91246 0.78119 0.78948 1.43657 1.13461 1.43562 1.38930 1.90725 1.46410 1.55444 1.54966 1.20848 1.07504 0.91593 1.08832 0.89675 0.88484 0.86977 0.88022 0.74571 0.87689 0.89498 0.88135 0.87003 0.76215 0.74959 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.26 11.48 21.82 0.25 -42.01 16 2 C 0.05 2.40 4.90 85.25 0.42 2.81 16 3 Si 0.98 38.36 29.64 68.60 2.03 40.39 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.50 -27.89 8.99 23.46 0.21 -27.67 16 8 H 0.08 4.14 7.98 -2.91 -0.02 4.11 16 9 C 0.10 5.59 5.57 -21.31 -0.12 5.47 16 10 C -0.20 -11.26 8.76 22.75 0.20 -11.06 16 11 C -0.09 -4.64 10.02 22.20 0.22 -4.41 16 12 C -0.24 -11.80 8.66 22.59 0.20 -11.61 16 13 C 0.17 7.87 6.15 38.10 0.23 8.10 16 14 N -0.66 -24.57 5.32 -303.65 -1.62 -26.19 16 15 C 0.52 18.33 7.06 87.66 0.62 18.94 16 16 O -0.57 -24.73 13.98 -3.04 -0.04 -24.77 16 17 C -0.12 -2.90 3.46 -11.01 -0.04 -2.94 16 18 H 0.13 3.05 7.47 -2.39 -0.02 3.03 16 19 C -0.11 -1.78 7.63 31.12 0.24 -1.54 16 20 C -0.10 -1.12 7.63 31.12 0.24 -0.88 16 21 C -0.12 -2.45 3.47 -11.01 -0.04 -2.48 16 22 H 0.12 2.67 7.44 -2.39 -0.02 2.65 16 23 C 0.52 12.03 7.62 87.66 0.67 12.69 16 24 N -0.83 -10.96 8.87 -173.53 -1.54 -12.50 16 25 O -0.59 -19.70 16.76 -3.03 -0.05 -19.75 16 26 C -0.27 -13.72 9.71 22.85 0.22 -13.50 16 27 H 0.29 13.67 8.30 -92.70 -0.77 12.90 16 28 H 0.10 5.47 6.38 -2.91 -0.02 5.45 16 29 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 30 H 0.10 4.79 6.82 -2.92 -0.02 4.77 16 31 H 0.42 12.44 8.83 -92.71 -0.82 11.62 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.49 8.10 -2.39 -0.02 1.47 16 34 H 0.10 0.97 8.09 -2.39 -0.02 0.95 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.41 4.64 8.93 -92.71 -0.83 3.81 16 37 H 0.42 2.58 8.83 -92.71 -0.82 1.77 16 38 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -77.15 326.55 0.97 -76.18 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -1.33 Total: 36.72 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.27 Total: -28.07 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -2.91 Total: -80.70 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.09 Total: -44.52 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -77.15 0.97 -76.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572059560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.998 kcal (2) G-P(sol) polarization free energy of solvation -77.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds