Wall clock time and date at job start Tue Mar 31 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99967 * 2 1 4 4 H 1.48498 * 109.47251 * 270.00612 * 3 2 1 5 5 H 1.48501 * 109.46570 * 30.00257 * 3 2 1 6 6 H 1.48498 * 109.47293 * 150.00007 * 3 2 1 7 7 C 1.37879 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99850 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64634 * 298.30527 * 9 7 2 11 11 C 1.54596 * 110.72820 * 61.45496 * 9 7 2 12 12 C 1.53988 * 105.14322 * 140.49169 * 11 9 7 13 13 N 1.47897 * 107.05777 * 1.22882 * 12 11 9 14 14 C 1.38333 * 111.00264 * 214.15394 * 13 12 11 15 15 C 1.39477 * 119.54500 * 59.87436 * 14 13 12 16 16 C 1.36620 * 119.32039 * 180.02562 * 15 14 13 17 17 C 1.41037 * 118.65384 * 359.97438 * 16 15 14 18 18 C 1.39495 * 118.91617 * 0.02562 * 17 16 15 19 19 N 1.32041 * 120.31015 * 359.97438 * 18 17 16 20 20 C 1.51096 * 109.42158 * 179.97438 * 18 17 16 21 21 C 1.53486 * 106.27825 * 359.97438 * 20 18 17 22 22 C 1.46923 * 130.19253 * 179.97438 * 17 16 15 23 23 O 1.21298 * 126.04497 * 0.02562 * 22 17 16 24 24 C 1.48538 * 105.82358 * 334.66836 * 13 12 11 25 25 H 0.96996 * 120.00398 * 359.97438 * 1 2 3 26 26 H 0.96699 * 114.00382 * 61.69235 * 10 9 7 27 27 H 1.09008 * 110.30242 * 21.57436 * 11 9 7 28 28 H 1.08995 * 110.39460 * 259.45666 * 11 9 7 29 29 H 1.09004 * 109.91692 * 241.88000 * 12 11 9 30 30 H 1.09005 * 110.08159 * 120.67312 * 12 11 9 31 31 H 1.08008 * 120.34301 * 0.04108 * 15 14 13 32 32 H 1.08004 * 120.66999 * 180.02562 * 16 15 14 33 33 H 1.09003 * 110.09157 * 240.79164 * 20 18 17 34 34 H 1.08996 * 110.14350 * 119.23251 * 20 18 17 35 35 H 1.09002 * 110.27600 * 118.96226 * 21 20 18 36 36 H 1.08997 * 110.27614 * 240.94588 * 21 20 18 37 37 H 1.08997 * 110.67049 * 157.63942 * 24 13 12 38 38 H 1.08997 * 110.66521 * 280.77561 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.4506 -2.6187 1.1771 11 6 0.3787 -2.6273 -1.2704 12 6 0.5028 -4.1018 -1.6965 13 7 1.3710 -4.7691 -0.7025 14 6 2.1425 -5.7510 -1.2977 15 6 3.0281 -5.4054 -2.3183 16 6 3.7874 -6.3788 -2.9034 17 6 3.6487 -7.7077 -2.4516 18 6 2.7430 -7.9805 -1.4264 19 7 2.0300 -7.0068 -0.8905 20 6 2.7673 -9.4587 -1.1146 21 6 3.7964 -10.0824 -2.0673 22 6 4.3262 -8.9346 -2.8924 23 8 5.1641 -9.0128 -3.7661 24 6 2.2241 -3.6984 -0.1261 25 1 -0.4850 0.8400 0.0004 26 1 -0.2276 -1.9348 1.2629 27 1 0.7564 -1.9731 -2.0563 28 1 -0.6595 -2.3850 -1.0439 29 1 0.9548 -4.1654 -2.6864 30 1 -0.4803 -4.5725 -1.7064 31 1 3.1130 -4.3786 -2.6427 32 1 4.4805 -6.1355 -3.6952 33 1 1.7836 -9.8944 -1.2892 34 1 3.0692 -9.6191 -0.0796 35 1 4.6052 -10.5436 -1.5004 36 1 3.3173 -10.8212 -2.7098 37 1 2.6011 -3.9922 0.8535 38 1 3.0466 -3.4575 -0.7996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000645343730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:25 Heat of formation + Delta-G solvation = -29.556139 kcal Electronic energy + Delta-G solvation = -22555.028731 eV Core-core repulsion = 19169.788166 eV Total energy + Delta-G solvation = -3385.240565 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16409 -39.41513 -37.98620 -35.68492 -34.19157 -32.63515 -32.19553 -30.30394 -28.26259 -28.03402 -26.39140 -24.85145 -23.06466 -22.32099 -20.39504 -20.07193 -19.66403 -17.38375 -17.09888 -16.47350 -16.18999 -16.15145 -15.10818 -14.89233 -14.54841 -14.02489 -13.89991 -13.82829 -13.63099 -13.38582 -12.95142 -12.73315 -12.52498 -12.29337 -12.07740 -11.86312 -11.42811 -11.37331 -11.13163 -10.82514 -10.60014 -10.48531 -10.27381 -9.99623 -9.92092 -9.40527 -9.34290 -8.79997 -8.66550 -8.21167 -8.00270 -6.28893 -4.38011 0.33009 1.20173 2.20088 3.17349 3.25663 3.28563 3.35257 3.62135 3.91108 4.20918 4.25808 4.48928 4.76878 4.77405 4.82080 4.96304 4.98694 5.14667 5.37758 5.39971 5.54081 5.55721 5.66165 5.69097 5.74996 5.94566 5.98142 6.00836 6.23457 6.31825 6.47381 6.70081 6.86219 7.13091 7.26157 7.34575 7.36012 7.44532 7.72319 8.04956 8.13184 8.64504 9.31465 9.47424 10.78210 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.032719 B = 0.003746 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.566850 B = 7473.671057 C = 7908.182439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.261 3.739 10 O -0.578 6.578 11 C -0.129 4.129 12 C 0.046 3.954 13 N -0.485 5.485 14 C 0.369 3.631 15 C -0.220 4.220 16 C 0.003 3.997 17 C -0.273 4.273 18 C 0.180 3.820 19 N -0.473 5.473 20 C -0.069 4.069 21 C -0.168 4.168 22 C 0.415 3.585 23 O -0.450 6.450 24 C 0.062 3.938 25 H 0.268 0.732 26 H 0.379 0.621 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.984 -14.343 -4.911 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.220 3.780 10 O -0.386 6.386 11 C -0.168 4.168 12 C -0.080 4.080 13 N -0.208 5.208 14 C 0.138 3.862 15 C -0.243 4.243 16 C -0.023 4.023 17 C -0.276 4.276 18 C 0.041 3.959 19 N -0.183 5.183 20 C -0.107 4.107 21 C -0.206 4.206 22 C 0.293 3.707 23 O -0.326 6.326 24 C -0.063 4.063 25 H 0.078 0.922 26 H 0.229 0.771 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.164 0.836 32 H 0.155 0.845 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.733 -15.229 -4.184 16.228 hybrid contribution 1.014 2.130 -1.402 2.744 sum 4.747 -13.099 -5.585 15.010 Atomic orbital electron populations 1.69718 1.05931 1.27622 1.49837 1.24983 0.94988 0.99436 0.93557 0.86461 0.79939 0.82640 0.78195 1.20530 1.20974 1.19723 1.21540 0.93602 0.90486 1.52315 0.91964 1.19289 0.86549 0.89932 0.82217 1.86160 1.51563 1.56200 1.44661 1.22989 1.02585 0.90522 1.00668 1.23079 0.96329 0.96888 0.91672 1.61500 1.18924 1.10317 1.30045 1.20186 0.88520 0.90065 0.87424 1.22466 0.99971 1.01750 1.00149 1.21165 0.94707 0.90518 0.95895 1.21915 1.05389 0.96077 1.04233 1.21777 0.88954 0.95434 0.89765 1.66663 1.23945 0.99337 1.28349 1.20754 1.00831 0.88017 1.01119 1.22331 1.00499 0.98555 0.99220 1.22172 0.78725 0.89367 0.80452 1.90550 1.27233 1.87456 1.27317 1.23416 0.94612 0.89401 0.98851 0.92203 0.77136 0.91448 0.90789 0.94407 0.90960 0.83606 0.84482 0.88051 0.87987 0.87010 0.87019 0.90207 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.89 11.00 55.43 0.61 -22.28 16 2 C 0.07 1.86 5.28 -17.82 -0.09 1.77 16 3 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.84 8.15 -34.44 -0.28 -14.12 16 8 H 0.06 1.58 7.78 -52.49 -0.41 1.17 16 9 C 0.26 6.22 0.95 -89.91 -0.09 6.14 16 10 O -0.58 -14.82 13.09 -35.23 -0.46 -15.28 16 11 C -0.13 -2.81 5.26 -25.38 -0.13 -2.94 16 12 C 0.05 0.88 6.49 -2.76 -0.02 0.86 16 13 N -0.49 -9.66 5.35 -169.32 -0.91 -10.56 16 14 C 0.37 6.54 5.83 -155.46 -0.91 5.63 16 15 C -0.22 -3.36 7.79 -39.70 -0.31 -3.67 16 16 C 0.00 0.04 10.18 -39.11 -0.40 -0.36 16 17 C -0.27 -3.62 6.14 -104.85 -0.64 -4.26 16 18 C 0.18 2.43 7.39 -81.84 -0.61 1.83 16 19 N -0.47 -8.06 10.38 -8.24 -0.09 -8.15 16 20 C -0.07 -0.59 6.81 -27.44 -0.19 -0.78 16 21 C -0.17 -1.24 6.86 -27.50 -0.19 -1.43 16 22 C 0.41 4.87 7.76 -30.67 -0.24 4.63 16 23 O -0.45 -6.52 18.03 5.54 0.10 -6.42 16 24 C 0.06 1.33 5.53 -1.89 -0.01 1.31 16 25 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 26 H 0.38 9.73 7.46 45.56 0.34 10.07 16 27 H 0.07 1.50 7.84 -51.92 -0.41 1.10 16 28 H 0.07 1.70 7.98 -51.93 -0.41 1.28 16 29 H 0.04 0.64 6.64 -51.93 -0.34 0.30 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.15 2.12 7.01 -52.48 -0.37 1.76 16 32 H 0.14 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.76 8.14 -51.93 -0.42 1.33 16 38 H 0.06 1.10 6.50 -51.93 -0.34 0.76 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -29.45 315.54 -9.14 -38.59 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.03 Total: 9.85 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -4.10 Total: -5.40 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.38 Total: -40.99 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.36 Total: -21.70 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.45 -9.14 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000645343730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.032 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds