Wall clock time and date at job start Tue Mar 31 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99967 * 2 1 4 4 H 1.48498 * 109.47251 * 270.00612 * 3 2 1 5 5 H 1.48501 * 109.46570 * 30.00257 * 3 2 1 6 6 H 1.48498 * 109.47293 * 150.00007 * 3 2 1 7 7 C 1.37879 * 120.00391 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00218 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99850 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64634 * 298.30527 * 9 7 2 11 11 C 1.54596 * 110.72820 * 61.45496 * 9 7 2 12 12 C 1.53988 * 105.14322 * 140.49169 * 11 9 7 13 13 N 1.47897 * 107.05777 * 1.22882 * 12 11 9 14 14 C 1.38333 * 111.00264 * 214.15394 * 13 12 11 15 15 C 1.39477 * 119.54500 * 59.87436 * 14 13 12 16 16 C 1.36620 * 119.32039 * 180.02562 * 15 14 13 17 17 C 1.41037 * 118.65384 * 359.97438 * 16 15 14 18 18 C 1.39495 * 118.91617 * 0.02562 * 17 16 15 19 19 N 1.32041 * 120.31015 * 359.97438 * 18 17 16 20 20 C 1.51096 * 109.42158 * 179.97438 * 18 17 16 21 21 C 1.53486 * 106.27825 * 359.97438 * 20 18 17 22 22 C 1.46923 * 130.19253 * 179.97438 * 17 16 15 23 23 O 1.21298 * 126.04497 * 0.02562 * 22 17 16 24 24 C 1.48538 * 105.82358 * 334.66836 * 13 12 11 25 25 H 0.96996 * 120.00398 * 359.97438 * 1 2 3 26 26 H 0.96699 * 114.00382 * 61.69235 * 10 9 7 27 27 H 1.09008 * 110.30242 * 21.57436 * 11 9 7 28 28 H 1.08995 * 110.39460 * 259.45666 * 11 9 7 29 29 H 1.09004 * 109.91692 * 241.88000 * 12 11 9 30 30 H 1.09005 * 110.08159 * 120.67312 * 12 11 9 31 31 H 1.08008 * 120.34301 * 0.04108 * 15 14 13 32 32 H 1.08004 * 120.66999 * 180.02562 * 16 15 14 33 33 H 1.09003 * 110.09157 * 240.79164 * 20 18 17 34 34 H 1.08996 * 110.14350 * 119.23251 * 20 18 17 35 35 H 1.09002 * 110.27600 * 118.96226 * 21 20 18 36 36 H 1.08997 * 110.27614 * 240.94588 * 21 20 18 37 37 H 1.08997 * 110.67049 * 157.63942 * 24 13 12 38 38 H 1.08997 * 110.66521 * 280.77561 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.4506 -2.6187 1.1771 11 6 0.3787 -2.6273 -1.2704 12 6 0.5028 -4.1018 -1.6965 13 7 1.3710 -4.7691 -0.7025 14 6 2.1425 -5.7510 -1.2977 15 6 3.0281 -5.4054 -2.3183 16 6 3.7874 -6.3788 -2.9034 17 6 3.6487 -7.7077 -2.4516 18 6 2.7430 -7.9805 -1.4264 19 7 2.0300 -7.0068 -0.8905 20 6 2.7673 -9.4587 -1.1146 21 6 3.7964 -10.0824 -2.0673 22 6 4.3262 -8.9346 -2.8924 23 8 5.1641 -9.0128 -3.7661 24 6 2.2241 -3.6984 -0.1261 25 1 -0.4850 0.8400 0.0004 26 1 -0.2276 -1.9348 1.2629 27 1 0.7564 -1.9731 -2.0563 28 1 -0.6595 -2.3850 -1.0439 29 1 0.9548 -4.1654 -2.6864 30 1 -0.4803 -4.5725 -1.7064 31 1 3.1130 -4.3786 -2.6427 32 1 4.4805 -6.1355 -3.6952 33 1 1.7836 -9.8944 -1.2892 34 1 3.0692 -9.6191 -0.0796 35 1 4.6052 -10.5436 -1.5004 36 1 3.3173 -10.8212 -2.7098 37 1 2.6011 -3.9922 0.8535 38 1 3.0466 -3.4575 -0.7996 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000645343730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:24 Heat of formation + Delta-G solvation = -50.148074 kcal Electronic energy + Delta-G solvation = -22555.921664 eV Core-core repulsion = 19169.788166 eV Total energy + Delta-G solvation = -3386.133498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.27979 -40.67399 -39.31048 -37.09077 -35.49920 -34.17917 -33.77041 -31.78788 -29.97517 -29.24987 -27.39911 -26.53981 -24.24136 -23.56259 -21.74840 -21.46423 -21.04700 -19.18169 -18.18075 -17.75654 -17.53004 -16.98170 -16.89672 -16.52286 -15.76983 -15.54064 -15.25108 -14.91310 -14.76704 -14.59726 -14.28856 -14.10736 -13.85837 -13.58779 -13.34312 -13.25056 -13.10216 -12.90070 -12.56850 -12.43625 -12.25709 -12.13391 -11.82040 -11.28037 -11.20738 -11.01835 -10.63331 -10.53118 -10.13675 -9.93366 -9.47042 -8.22409 -6.38551 -0.76395 0.10925 1.21217 1.41357 1.44813 1.53474 2.21234 2.40030 2.52716 2.93452 3.03423 3.30449 3.56932 3.62273 3.77878 3.92287 3.98032 4.04912 4.13785 4.16218 4.25505 4.30982 4.41586 4.57057 4.66911 4.79810 4.88243 4.94659 4.97349 5.02485 5.03591 5.10905 5.29306 5.37931 5.52456 5.59655 5.78630 6.02840 6.16965 6.36917 6.66792 6.91851 7.33493 7.46591 8.83335 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.032719 B = 0.003746 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.566850 B = 7473.671057 C = 7908.182439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.035 3.965 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.563 4.563 8 H 0.057 0.943 9 C 0.244 3.756 10 O -0.590 6.590 11 C -0.117 4.117 12 C 0.055 3.945 13 N -0.497 5.497 14 C 0.342 3.658 15 C -0.224 4.224 16 C 0.003 3.997 17 C -0.279 4.279 18 C 0.175 3.825 19 N -0.500 5.500 20 C -0.066 4.066 21 C -0.152 4.152 22 C 0.416 3.584 23 O -0.481 6.481 24 C 0.073 3.927 25 H 0.270 0.730 26 H 0.374 0.626 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.064 0.936 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 -16.326 -5.639 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.167 4.167 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.601 4.601 8 H 0.076 0.924 9 C 0.204 3.796 10 O -0.398 6.398 11 C -0.156 4.156 12 C -0.071 4.071 13 N -0.219 5.219 14 C 0.111 3.889 15 C -0.247 4.247 16 C -0.023 4.023 17 C -0.283 4.283 18 C 0.036 3.964 19 N -0.211 5.211 20 C -0.103 4.103 21 C -0.189 4.189 22 C 0.296 3.704 23 O -0.359 6.359 24 C -0.053 4.053 25 H 0.079 0.921 26 H 0.223 0.777 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.174 0.826 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.083 0.917 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.668 -17.230 -4.914 18.515 hybrid contribution 0.750 2.660 -1.182 3.006 sum 5.417 -14.571 -6.096 16.698 Atomic orbital electron populations 1.69802 1.06804 1.28284 1.49817 1.25640 0.95768 1.02109 0.93161 0.85548 0.78609 0.79092 0.78297 1.19847 1.20762 1.19841 1.21788 0.93610 0.91745 1.53002 0.92447 1.19529 0.87146 0.90623 0.82280 1.86152 1.51657 1.56036 1.45924 1.22742 1.00881 0.92472 0.99478 1.22966 0.96913 0.94748 0.92479 1.61322 1.19343 1.10304 1.30973 1.20102 0.89820 0.90080 0.88888 1.22375 1.00092 1.02269 0.99947 1.21437 0.94311 0.90667 0.95894 1.22379 1.05224 0.96716 1.03947 1.22550 0.87751 0.96996 0.89130 1.66618 1.25370 0.99693 1.29407 1.20996 1.02427 0.84480 1.02430 1.22401 1.00803 0.97059 0.98623 1.22661 0.77718 0.89954 0.80053 1.90551 1.28620 1.87831 1.28854 1.23193 0.94434 0.89081 0.98586 0.92071 0.77707 0.92396 0.92541 0.92382 0.90439 0.83462 0.82645 0.86044 0.86237 0.84270 0.84104 0.91722 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.27 11.00 21.45 0.24 -47.03 16 2 C 0.03 1.77 5.28 84.66 0.45 2.22 16 3 Si 0.96 40.97 29.54 68.60 2.03 42.99 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.56 -29.36 8.15 25.60 0.21 -29.15 16 8 H 0.06 2.96 7.78 -2.91 -0.02 2.94 16 9 C 0.24 11.97 0.95 -10.34 -0.01 11.96 16 10 O -0.59 -31.25 13.09 -148.98 -1.95 -33.20 16 11 C -0.12 -5.22 5.26 31.47 0.17 -5.05 16 12 C 0.05 2.09 6.49 86.45 0.56 2.65 16 13 N -0.50 -19.97 5.35 -689.59 -3.69 -23.66 16 14 C 0.34 12.02 5.83 133.34 0.78 12.79 16 15 C -0.22 -6.72 7.79 22.19 0.17 -6.55 16 16 C 0.00 0.07 10.18 22.58 0.23 0.29 16 17 C -0.28 -6.86 6.14 -20.01 -0.12 -6.98 16 18 C 0.17 4.36 7.39 42.96 0.32 4.67 16 19 N -0.50 -16.64 10.38 -179.98 -1.87 -18.51 16 20 C -0.07 -0.87 6.81 30.14 0.21 -0.67 16 21 C -0.15 -1.54 6.86 30.09 0.21 -1.34 16 22 C 0.42 8.57 7.76 28.05 0.22 8.79 16 23 O -0.48 -12.88 18.03 -3.09 -0.06 -12.94 16 24 C 0.07 3.17 5.53 86.65 0.48 3.65 16 25 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 26 H 0.37 19.96 7.46 -74.06 -0.55 19.40 16 27 H 0.06 2.64 7.84 -2.38 -0.02 2.62 16 28 H 0.06 2.67 7.98 -2.39 -0.02 2.65 16 29 H 0.06 1.95 6.64 -2.38 -0.02 1.94 16 30 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 31 H 0.15 4.26 7.01 -2.91 -0.02 4.24 16 32 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.07 2.65 6.50 -2.39 -0.02 2.64 16 Total: -1.00 -64.82 315.54 -0.90 -65.72 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.55 Total: 29.33 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 3.85 Total: -2.71 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -5.32 Total: -89.19 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -2.01 Total: -46.14 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -64.82 -0.90 -65.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000645343730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.573 kcal (2) G-P(sol) polarization free energy of solvation -64.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds