Wall clock time and date at job start Tue Mar 31 2020 06:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53009 * 109.46954 * 174.79704 * 3 2 1 5 5 C 1.52996 * 109.47130 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47128 * 179.97438 * 5 4 3 7 7 C 1.34774 * 120.00119 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.08993 * 109.47300 * 54.80088 * 3 2 1 26 26 H 1.08998 * 109.47260 * 294.79305 * 3 2 1 27 27 H 1.09002 * 109.46549 * 60.00091 * 4 3 2 28 28 H 1.08998 * 109.47227 * 300.00529 * 4 3 2 29 29 H 1.09008 * 109.46644 * 60.00251 * 5 4 3 30 30 H 1.08998 * 109.47635 * 300.00447 * 5 4 3 31 31 H 0.97001 * 119.99420 * 0.02562 * 6 5 4 32 32 H 1.09002 * 109.46571 * 59.99894 * 9 7 6 33 33 H 1.08992 * 109.46782 * 300.00158 * 9 7 6 34 34 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 35 35 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 36 36 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 37 37 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4375 -0.1308 5 6 4.6473 1.4383 -0.1302 6 7 5.1350 2.8140 -0.2561 7 6 6.4599 3.0599 -0.2785 8 8 7.2486 2.1423 -0.1950 9 6 6.9616 4.4752 -0.4074 10 6 8.4686 4.4758 -0.4082 11 6 9.1600 4.5851 0.7849 12 6 10.5428 4.5866 0.7883 13 6 11.2378 4.4724 -0.3998 14 6 10.5467 4.3683 -1.5996 15 8 11.2271 4.2620 -2.7695 16 6 12.5685 4.3849 -2.7108 17 1 13.0609 4.4783 -1.7542 18 6 13.3157 4.3914 -3.8788 19 7 12.7159 4.2781 -5.0441 20 14 15.1741 4.5624 -3.7976 21 1 15.7915 3.2151 -3.7038 22 1 15.6623 5.2466 -5.0218 23 1 15.5460 5.3615 -2.6023 24 6 9.1577 4.3678 -1.5998 25 1 2.9716 -0.5915 -0.8397 26 1 2.9716 -0.4301 0.9329 27 1 2.7537 2.0297 0.7090 28 1 2.7538 1.8684 -1.0637 29 1 5.0113 0.8459 -0.9698 30 1 5.0106 1.0076 0.8029 31 1 4.5042 3.5479 -0.3232 32 1 6.5980 5.0674 0.4324 33 1 6.5980 4.9059 -1.3402 34 1 8.6187 4.6694 1.7157 35 1 11.0798 4.6725 1.7214 36 1 12.3178 4.4685 -0.3960 37 1 13.2387 4.2831 -5.8611 38 1 8.6173 4.2832 -2.5310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784138574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:03 Heat of formation + Delta-G solvation = -24.497730 kcal Electronic energy + Delta-G solvation = -20831.217694 eV Core-core repulsion = 17446.196479 eV Total energy + Delta-G solvation = -3385.021216 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.85277 -38.78036 -37.51753 -36.50520 -35.62950 -33.12241 -32.33114 -31.88653 -29.21432 -28.10503 -26.37319 -25.16380 -22.55300 -21.64581 -21.22117 -20.17166 -18.09341 -17.61839 -17.03363 -16.82558 -16.43066 -15.71100 -15.36575 -14.94633 -14.46552 -14.38572 -14.29553 -13.85551 -13.76652 -13.41229 -13.34299 -13.11235 -12.64384 -12.43427 -12.32789 -12.11295 -11.97927 -11.79318 -11.51621 -11.33986 -11.23620 -10.79235 -10.74837 -10.57803 -10.41394 -9.76358 -9.29167 -9.18227 -8.79380 -8.01917 -7.16927 -6.39874 -3.98749 2.12139 2.29743 2.36169 2.44223 2.76542 3.11030 3.16509 3.17461 3.21421 3.55063 4.00631 4.39298 4.45763 4.55941 4.62088 4.92788 4.95763 5.02892 5.13662 5.15359 5.25488 5.31749 5.52392 5.58211 5.67235 5.71410 5.79857 5.97776 6.22456 6.30401 6.38631 6.70638 6.96626 7.12086 7.12441 7.31198 7.40168 7.42677 7.49130 7.87892 8.05367 8.29951 9.06018 9.77262 10.78456 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.028693 B = 0.002495 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.626846 B =11217.913468 C =11823.461726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.207 3.793 3 C -0.024 4.024 4 C -0.128 4.128 5 C 0.119 3.881 6 N -0.742 5.742 7 C 0.514 3.486 8 O -0.517 6.517 9 C -0.094 4.094 10 C -0.034 4.034 11 C -0.197 4.197 12 C -0.075 4.075 13 C -0.231 4.231 14 C 0.154 3.846 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.174 4.174 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.399 0.601 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.269 0.731 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.471 -2.335 10.443 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.111 4.111 3 C -0.064 4.064 4 C -0.168 4.168 5 C -0.005 4.005 6 N -0.396 5.396 7 C 0.300 3.700 8 O -0.391 6.391 9 C -0.134 4.134 10 C -0.034 4.034 11 C -0.216 4.216 12 C -0.093 4.093 13 C -0.250 4.250 14 C 0.101 3.899 15 O -0.084 6.084 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.194 4.194 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.578 -3.075 10.015 19.610 hybrid contribution 1.067 0.376 0.045 1.132 sum -15.511 -2.698 10.060 18.684 Atomic orbital electron populations 1.81269 1.13145 1.08220 1.08907 1.29189 0.95294 0.93419 0.93190 1.19195 0.81525 0.99232 1.06468 1.21734 0.95436 0.95454 1.04140 1.21253 0.92001 0.84257 1.02985 1.45995 1.07434 1.08868 1.77312 1.20770 0.81533 0.91860 0.75814 1.90770 1.54951 1.46301 1.47045 1.20589 0.94640 0.93648 1.04500 1.18657 0.91932 0.99689 0.93146 1.20348 0.94068 1.11048 0.96097 1.20679 0.93861 0.98012 0.96798 1.21173 1.00559 1.10990 0.92268 1.19284 0.91503 0.92432 0.86699 1.83975 1.20861 1.77910 1.25618 1.21313 0.78661 1.52045 0.94631 0.89132 1.25273 1.00409 0.96727 0.94178 1.70038 1.36193 1.46303 0.97461 0.85722 0.80804 0.78718 0.78231 1.19927 1.20317 1.19233 1.19947 0.91567 1.10496 0.97372 0.86751 0.86824 0.90296 0.90199 0.90921 0.91036 0.76675 0.88381 0.88227 0.87949 0.87500 0.85643 0.92122 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.49 18.54 42.16 0.78 -3.71 16 2 C 0.21 1.34 15.43 -20.76 -0.32 1.02 16 3 C -0.02 -0.06 5.70 -29.52 -0.17 -0.23 16 4 C -0.13 -0.42 5.28 -26.73 -0.14 -0.56 16 5 C 0.12 0.76 5.67 -4.04 -0.02 0.74 16 6 N -0.74 -6.00 5.56 -60.29 -0.33 -6.33 16 7 C 0.51 6.70 7.82 -10.98 -0.09 6.61 16 8 O -0.52 -9.42 16.03 5.56 0.09 -9.33 16 9 C -0.09 -1.16 5.83 -29.03 -0.17 -1.33 16 10 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 11 C -0.20 -3.48 9.70 -39.53 -0.38 -3.87 16 12 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 14 C 0.15 3.84 6.65 -39.11 -0.26 3.58 16 15 O -0.18 -5.24 9.76 0.05 0.00 -5.24 16 16 C -0.39 -11.09 9.49 30.89 0.29 -10.79 16 17 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 19 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16 20 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.17 -3.77 9.65 -39.39 -0.38 -4.15 16 25 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.11 0.11 8.14 -51.93 -0.42 -0.32 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.40 1.96 8.47 -40.82 -0.35 1.61 16 32 H 0.10 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 37 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -37.35 341.55 -6.23 -43.58 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.69 Total: 1.46 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.95 Total: -16.44 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 1.21 Total: -34.91 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.57 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.35 -6.23 -43.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784138574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.078 kcal (2) G-P(sol) polarization free energy of solvation -37.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds