Wall clock time and date at job start Tue Mar 31 2020 06:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53009 * 109.46954 * 174.79704 * 3 2 1 5 5 C 1.52996 * 109.47130 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47128 * 179.97438 * 5 4 3 7 7 C 1.34774 * 120.00119 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00304 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00135 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.08993 * 109.47300 * 54.80088 * 3 2 1 26 26 H 1.08998 * 109.47260 * 294.79305 * 3 2 1 27 27 H 1.09002 * 109.46549 * 60.00091 * 4 3 2 28 28 H 1.08998 * 109.47227 * 300.00529 * 4 3 2 29 29 H 1.09008 * 109.46644 * 60.00251 * 5 4 3 30 30 H 1.08998 * 109.47635 * 300.00447 * 5 4 3 31 31 H 0.97001 * 119.99420 * 0.02562 * 6 5 4 32 32 H 1.09002 * 109.46571 * 59.99894 * 9 7 6 33 33 H 1.08992 * 109.46782 * 300.00158 * 9 7 6 34 34 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 35 35 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 36 36 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 37 37 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4375 -0.1308 5 6 4.6473 1.4383 -0.1302 6 7 5.1350 2.8140 -0.2561 7 6 6.4599 3.0599 -0.2785 8 8 7.2486 2.1423 -0.1950 9 6 6.9616 4.4752 -0.4074 10 6 8.4686 4.4758 -0.4082 11 6 9.1600 4.5851 0.7849 12 6 10.5428 4.5866 0.7883 13 6 11.2378 4.4724 -0.3998 14 6 10.5467 4.3683 -1.5996 15 8 11.2271 4.2620 -2.7695 16 6 12.5685 4.3849 -2.7108 17 1 13.0609 4.4783 -1.7542 18 6 13.3157 4.3914 -3.8788 19 7 12.7159 4.2781 -5.0441 20 14 15.1741 4.5624 -3.7976 21 1 15.7915 3.2151 -3.7038 22 1 15.6623 5.2466 -5.0218 23 1 15.5460 5.3615 -2.6023 24 6 9.1577 4.3678 -1.5998 25 1 2.9716 -0.5915 -0.8397 26 1 2.9716 -0.4301 0.9329 27 1 2.7537 2.0297 0.7090 28 1 2.7538 1.8684 -1.0637 29 1 5.0113 0.8459 -0.9698 30 1 5.0106 1.0076 0.8029 31 1 4.5042 3.5479 -0.3232 32 1 6.5980 5.0674 0.4324 33 1 6.5980 4.9059 -1.3402 34 1 8.6187 4.6694 1.7157 35 1 11.0798 4.6725 1.7214 36 1 12.3178 4.4685 -0.3960 37 1 13.2387 4.2831 -5.8611 38 1 8.6173 4.2832 -2.5310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784138574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:02 Heat of formation + Delta-G solvation = -51.252275 kcal Electronic energy + Delta-G solvation = -20832.377859 eV Core-core repulsion = 17446.196479 eV Total energy + Delta-G solvation = -3386.181380 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.05559 -40.31514 -38.28330 -37.95293 -36.38416 -34.32096 -33.85657 -33.17489 -30.85860 -29.12188 -27.51675 -26.95318 -23.33881 -23.06211 -22.52732 -21.34747 -19.46684 -18.77606 -18.47950 -17.85072 -16.95830 -16.72733 -16.58207 -16.38961 -16.04871 -15.73471 -15.46742 -14.98380 -14.82562 -14.60139 -14.46516 -14.24541 -13.94815 -13.67047 -13.57238 -12.99269 -12.94520 -12.66742 -12.63153 -12.43360 -12.34612 -12.32179 -12.18079 -12.07921 -11.66146 -11.17088 -10.88350 -10.76417 -9.95473 -9.58906 -8.93807 -8.44917 -6.13146 0.56943 0.80031 1.35450 1.45211 1.53312 1.77724 1.78815 1.87701 2.19403 2.36491 2.88401 3.12375 3.23257 3.48940 3.87551 4.08211 4.13650 4.15608 4.23744 4.34132 4.36573 4.50609 4.63442 4.71932 4.72500 4.73198 4.78494 4.95186 5.11622 5.16122 5.23168 5.29799 5.35874 5.59819 5.69459 5.77005 5.80025 6.05558 6.28437 6.65857 6.69717 6.99809 7.42508 7.82061 8.78642 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.028693 B = 0.002495 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.626846 B =11217.913468 C =11823.461726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.238 3.762 3 C -0.020 4.020 4 C -0.115 4.115 5 C 0.116 3.884 6 N -0.720 5.720 7 C 0.513 3.487 8 O -0.579 6.579 9 C -0.093 4.093 10 C -0.025 4.025 11 C -0.180 4.180 12 C -0.075 4.075 13 C -0.248 4.248 14 C 0.110 3.890 15 O -0.235 6.235 16 C -0.413 4.413 17 H 0.100 0.900 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.253 1.253 24 C -0.193 4.193 25 H 0.133 0.867 26 H 0.138 0.862 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.418 0.582 32 H 0.144 0.856 33 H 0.120 0.880 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.272 0.728 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.576 -1.713 13.297 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.078 4.078 3 C -0.060 4.060 4 C -0.154 4.154 5 C -0.008 4.008 6 N -0.374 5.374 7 C 0.301 3.699 8 O -0.458 6.458 9 C -0.133 4.133 10 C -0.026 4.026 11 C -0.199 4.199 12 C -0.093 4.093 13 C -0.268 4.268 14 C 0.060 3.940 15 O -0.142 6.142 16 C -0.489 4.489 17 H 0.117 0.883 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.839 3.161 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.176 1.176 24 C -0.213 4.213 25 H 0.151 0.849 26 H 0.155 0.845 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.256 0.744 32 H 0.162 0.838 33 H 0.138 0.862 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.134 0.866 37 H 0.081 0.919 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.777 -2.425 12.919 22.109 hybrid contribution 1.140 0.183 -0.603 1.302 sum -16.637 -2.243 12.316 20.821 Atomic orbital electron populations 1.81305 1.15441 1.10587 1.11515 1.29804 0.95767 0.91277 0.90957 1.19434 0.78788 0.99282 1.08532 1.21603 0.92882 0.96042 1.04918 1.21364 0.93911 0.82986 1.02532 1.45819 1.06171 1.10476 1.74887 1.20824 0.82608 0.91288 0.75223 1.90763 1.56757 1.47867 1.50449 1.20719 0.90552 0.94303 1.07696 1.19238 0.95239 0.96466 0.91639 1.20993 0.93787 1.07318 0.97756 1.21137 0.94933 0.96469 0.96770 1.21288 1.00414 1.12066 0.92984 1.19909 0.92944 0.94473 0.86679 1.83933 1.21315 1.80913 1.28032 1.21811 0.79174 1.52435 0.95481 0.88288 1.26605 1.06152 0.96063 0.93421 1.70186 1.38519 1.48954 0.98391 0.84578 0.73433 0.79210 0.78906 1.18938 1.19441 1.17626 1.20244 0.90631 1.11313 0.99067 0.84943 0.84456 0.89186 0.89799 0.92046 0.91077 0.74425 0.83828 0.86152 0.83368 0.83803 0.86623 0.91893 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.11 18.54 20.01 0.37 -9.74 16 2 C 0.24 2.63 15.43 89.44 1.38 4.01 16 3 C -0.02 -0.04 5.70 28.79 0.16 0.13 16 4 C -0.12 -0.33 5.28 30.60 0.16 -0.17 16 5 C 0.12 1.13 5.67 86.38 0.49 1.62 16 6 N -0.72 -9.07 5.56 -463.06 -2.57 -11.64 16 7 C 0.51 11.90 7.82 87.66 0.69 12.58 16 8 O -0.58 -20.39 16.03 -3.04 -0.05 -20.43 16 9 C -0.09 -1.93 5.83 29.10 0.17 -1.76 16 10 C -0.03 -0.84 4.37 -19.88 -0.09 -0.93 16 11 C -0.18 -5.70 9.70 22.30 0.22 -5.49 16 12 C -0.08 -2.69 10.04 22.25 0.22 -2.47 16 13 C -0.25 -11.37 9.17 22.39 0.21 -11.17 16 14 C 0.11 5.74 6.65 22.58 0.15 5.89 16 15 O -0.23 -14.69 9.76 -22.74 -0.22 -14.91 16 16 C -0.41 -24.83 9.49 67.92 0.64 -24.19 16 17 H 0.10 5.49 5.21 -2.91 -0.02 5.48 16 18 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 19 N -0.92 -57.75 13.67 21.61 0.30 -57.45 16 20 Si 1.02 43.83 29.55 68.60 2.03 45.85 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 23 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 24 C -0.19 -8.55 9.65 22.39 0.22 -8.33 16 25 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.14 -0.29 8.14 -2.39 -0.02 -0.30 16 27 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.42 2.20 8.47 -92.71 -0.79 1.41 16 32 H 0.14 1.72 8.09 -2.39 -0.02 1.70 16 33 H 0.12 2.05 8.08 -2.39 -0.02 2.03 16 34 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 36 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 37 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -90.46 341.55 5.24 -85.22 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.31 Total: 14.39 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 5.09 Total: -31.29 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -1.91 Total: -78.83 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.27 Total: -35.35 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -90.46 5.24 -85.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784138574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.968 kcal (2) G-P(sol) polarization free energy of solvation -90.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds