Wall clock time and date at job start Tue Mar 31 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46814 * 2 1 4 4 H 1.09001 * 109.47142 * 305.00027 * 3 2 1 5 5 C 1.50701 * 109.46958 * 184.99800 * 3 2 1 6 6 H 1.07995 * 119.99918 * 240.00003 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00311 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.46938 * 60.00050 * 9 7 5 11 11 H 1.48496 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47134 * 299.99873 * 9 7 5 13 13 O 1.45206 * 109.47091 * 65.00063 * 3 2 1 14 14 C 1.34859 * 116.99805 * 270.00098 * 13 3 2 15 15 O 1.21577 * 120.00011 * 359.97438 * 14 13 3 16 16 C 1.46807 * 119.99838 * 180.02562 * 14 13 3 17 17 C 1.35897 * 125.14320 * 179.72028 * 16 14 13 18 18 C 1.46214 * 106.07344 * 179.86126 * 17 16 14 19 19 C 1.39725 * 134.17716 * 180.09487 * 18 17 16 20 20 C 1.36612 * 119.70646 * 180.32132 * 19 18 17 21 21 C 1.50699 * 119.77691 * 180.02562 * 20 19 18 22 22 C 1.38845 * 120.44767 * 0.02701 * 20 19 18 23 23 C 1.37799 * 120.74630 * 359.95250 * 22 20 19 24 24 C 1.39022 * 119.85514 * 0.04529 * 23 22 20 25 25 O 1.34715 * 133.23361 * 179.97438 * 24 23 22 26 26 H 1.09006 * 109.46887 * 60.00189 * 1 2 3 27 27 H 1.09004 * 109.46776 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47245 * 300.00133 * 1 2 3 29 29 H 1.09003 * 109.46928 * 240.00367 * 2 1 3 30 30 H 1.08993 * 109.46985 * 120.00072 * 2 1 3 31 31 H 0.97001 * 119.99839 * 179.97438 * 8 7 5 32 32 H 1.08001 * 126.95606 * 359.97438 * 17 16 14 33 33 H 1.08001 * 120.14771 * 0.35001 * 19 18 17 34 34 H 1.09000 * 109.47122 * 90.00065 * 21 20 19 35 35 H 1.08997 * 109.47410 * 210.00216 * 21 20 19 36 36 H 1.09001 * 109.47422 * 330.00426 * 21 20 19 37 37 H 1.07998 * 119.62710 * 179.97438 * 22 20 19 38 38 H 1.08000 * 120.06705 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1728 9 14 6.0050 0.8814 -1.3818 10 1 6.5975 0.1475 -0.2349 11 1 6.3978 0.2180 -2.6509 12 1 6.4995 2.2817 -1.3821 13 8 1.6558 2.0917 1.2408 14 6 0.4671 2.7283 1.2561 15 8 -0.2288 2.7407 0.2592 16 6 0.0138 3.4075 2.4761 17 6 -1.1583 4.0828 2.6060 18 6 -1.1865 4.5844 3.9791 19 6 -2.0999 5.3363 4.7226 20 6 -1.8176 5.6534 6.0211 21 6 -2.8019 6.4638 6.8245 22 6 -0.6300 5.2341 6.6055 23 6 0.2837 4.4914 5.8897 24 6 0.0187 4.1564 4.5667 25 8 0.7007 3.4603 3.6367 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8293 -0.0610 -2.9498 32 1 -1.9162 4.2196 1.8489 33 1 -3.0251 5.6650 4.2728 34 1 -3.4978 5.7937 7.3293 35 1 -2.2655 7.0560 7.5658 36 1 -3.3544 7.1277 6.1596 37 1 -0.4202 5.4926 7.6329 38 1 1.2038 4.1707 6.3554 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787089340.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:46 Heat of formation + Delta-G solvation = -67.875396 kcal Electronic energy + Delta-G solvation = -22065.739571 eV Core-core repulsion = 18646.544607 eV Total energy + Delta-G solvation = -3419.194964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.47899 -39.58811 -38.35250 -36.00638 -33.57345 -32.88606 -32.37141 -31.41087 -29.80020 -27.53600 -26.97890 -24.64087 -23.10102 -22.00704 -21.62940 -20.74265 -19.72989 -17.97371 -17.51722 -16.71488 -16.37058 -15.96387 -15.45655 -15.09430 -14.87939 -14.51158 -14.24373 -13.87999 -13.40988 -13.13626 -13.08381 -12.81866 -12.44105 -12.27472 -12.02003 -11.82197 -11.56750 -11.41606 -11.26061 -11.10410 -10.97673 -10.70662 -10.36729 -10.29028 -10.10675 -9.79118 -9.46994 -8.88604 -8.60198 -8.49361 -8.34665 -6.21364 -4.28655 0.49657 1.17038 1.80409 2.47821 3.25986 3.28581 3.30236 3.32126 3.46609 3.49444 4.28532 4.44790 4.57907 4.62519 4.86483 5.04332 5.09192 5.10939 5.24020 5.33219 5.44122 5.52637 5.69118 5.69820 6.00951 6.02922 6.18833 6.22011 6.25692 6.31727 6.39023 6.47590 6.77261 6.88519 7.01968 7.10231 7.10801 7.54873 7.67160 7.82740 8.09241 8.44374 8.80700 9.36271 10.85478 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.029041 B = 0.003498 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.921821 B = 8002.015703 C = 8612.109139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.220 3.780 4 H 0.051 0.949 5 C -0.523 4.523 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.913 3.087 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.274 1.274 13 O -0.339 6.339 14 C 0.534 3.466 15 O -0.486 6.486 16 C 0.016 3.984 17 C -0.124 4.124 18 C -0.138 4.138 19 C -0.062 4.062 20 C -0.110 4.110 21 C -0.109 4.109 22 C -0.086 4.086 23 C -0.104 4.104 24 C 0.064 3.936 25 O -0.167 6.167 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.030 0.970 29 H 0.112 0.888 30 H 0.044 0.956 31 H 0.268 0.732 32 H 0.172 0.828 33 H 0.130 0.870 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.135 0.865 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.528 9.080 15.567 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.561 4.561 6 H 0.088 0.912 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.740 3.260 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.254 6.254 14 C 0.376 3.624 15 O -0.377 6.377 16 C -0.033 4.033 17 C -0.144 4.144 18 C -0.139 4.139 19 C -0.080 4.080 20 C -0.111 4.111 21 C -0.166 4.166 22 C -0.104 4.104 23 C -0.122 4.122 24 C 0.015 3.985 25 O -0.068 6.068 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.130 0.870 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.190 0.810 33 H 0.147 0.853 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.394 8.817 15.089 20.333 hybrid contribution 0.820 -0.114 -0.328 0.891 sum -9.574 8.703 14.760 19.628 Atomic orbital electron populations 1.21883 0.98341 0.99316 1.00681 1.22049 0.92675 0.99102 1.03663 1.20855 0.95375 0.88907 0.78008 0.93128 1.20992 0.89405 1.39301 1.06434 0.91205 1.24877 0.99373 0.94622 0.94958 1.69871 1.35562 1.37645 1.09467 0.86305 0.83659 0.78548 0.77491 1.19875 1.20987 1.19937 1.86680 1.32450 1.61699 1.44565 1.19269 0.81862 0.76889 0.84354 1.90897 1.55849 1.58599 1.32320 1.21278 0.93055 1.03566 0.85380 1.22697 0.97392 0.98700 0.95609 1.19876 0.96502 1.03508 0.94039 1.20183 0.98200 0.96552 0.93078 1.19505 0.96403 1.00727 0.94418 1.20741 0.97625 0.98821 0.99396 1.20856 0.92884 0.97051 0.99654 1.19997 1.01555 1.01300 0.89379 1.19845 0.91372 0.95760 0.91497 1.84192 1.43287 1.60736 1.18538 0.92661 0.94513 0.95097 0.87027 0.93729 0.92235 0.81035 0.85256 0.91183 0.91446 0.91490 0.84684 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.56 37.16 0.32 -2.85 16 2 C -0.14 -3.41 5.49 -26.73 -0.15 -3.55 16 3 C 0.22 5.90 2.25 -27.88 -0.06 5.83 16 4 H 0.05 1.47 7.16 -51.93 -0.37 1.10 16 5 C -0.52 -14.73 8.90 -34.44 -0.31 -15.03 16 6 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -24.88 11.29 55.43 0.63 -24.25 16 9 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 O -0.34 -8.38 9.82 -42.76 -0.42 -8.80 16 14 C 0.53 11.72 6.39 34.19 0.22 11.94 16 15 O -0.49 -11.16 14.02 -19.32 -0.27 -11.43 16 16 C 0.02 0.29 7.10 -36.96 -0.26 0.03 16 17 C -0.12 -1.91 10.81 -37.22 -0.40 -2.31 16 18 C -0.14 -1.93 6.38 -105.19 -0.67 -2.60 16 19 C -0.06 -0.67 9.68 -39.61 -0.38 -1.06 16 20 C -0.11 -1.02 5.85 -104.99 -0.61 -1.64 16 21 C -0.11 -0.67 10.00 36.00 0.36 -0.31 16 22 C -0.09 -0.80 9.66 -39.52 -0.38 -1.18 16 23 C -0.10 -1.20 10.07 -39.45 -0.40 -1.60 16 24 C 0.06 0.96 7.41 -38.35 -0.28 0.67 16 25 O -0.17 -3.03 10.60 1.93 0.02 -3.01 16 26 H 0.05 1.24 7.79 -51.93 -0.40 0.84 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 29 H 0.11 2.98 5.95 -51.93 -0.31 2.67 16 30 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.17 2.28 8.06 -52.49 -0.42 1.85 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.33 8.08 -51.93 -0.42 -0.08 16 36 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 37 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -30.41 326.31 -8.00 -38.42 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.74 Total: 0.11 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -3.11 Total: -12.00 kcal Atomic # 7 Polarization: -24.88 SS G_CDS: 0.63 Total: -24.25 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.67 Total: -23.24 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.41 -8.00 -38.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787089340.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.459 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds