Wall clock time and date at job start Tue Mar 31 2020 06:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48495 * 109.47388 * 240.00162 * 3 2 1 5 5 H 1.48498 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46613 * 120.00060 * 3 2 1 7 7 C 1.38653 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99845 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99819 * 185.06205 * 9 7 2 11 11 C 1.39023 * 119.98999 * 174.18296 * 10 9 7 12 12 C 1.38210 * 120.24594 * 179.76269 * 11 10 9 13 13 C 1.38018 * 120.23341 * 0.50979 * 12 11 10 14 14 C 1.39726 * 119.97645 * 359.74466 * 13 12 11 15 15 C 1.47496 * 120.12074 * 180.02562 * 14 13 12 16 16 N 1.29753 * 120.00087 * 359.97438 * 15 14 13 17 17 N 1.40101 * 119.99856 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00048 * 179.97438 * 17 16 15 19 19 O 1.21313 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00119 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.47002 * 180.02562 * 20 18 17 22 22 C 1.53003 * 117.49702 * 243.62252 * 21 20 18 23 23 C 1.53001 * 117.49402 * 175.00099 * 21 20 18 24 24 C 1.38573 * 119.99489 * 354.45449 * 10 9 7 25 25 H 0.97005 * 120.00183 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.87318 * 0.02562 * 11 10 9 27 27 H 1.08001 * 119.88596 * 180.23875 * 12 11 10 28 28 H 1.07997 * 120.01264 * 179.76641 * 13 12 11 29 29 H 1.07999 * 119.99372 * 179.97438 * 15 14 13 30 30 H 0.97005 * 119.99822 * 359.97438 * 17 16 15 31 31 H 1.08998 * 109.47294 * 300.00365 * 20 18 17 32 32 H 1.08998 * 109.47083 * 60.00084 * 20 18 17 33 33 H 1.08997 * 115.54986 * 29.33240 * 21 20 18 34 34 H 1.08998 * 117.49598 * 359.97438 * 22 21 20 35 35 H 1.08996 * 117.49648 * 145.01996 * 22 21 20 36 36 H 1.09001 * 117.49519 * 214.97342 * 23 21 20 37 37 H 1.08997 * 117.50481 * 359.97438 * 23 21 20 38 38 H 1.08004 * 120.11255 * 359.95860 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6962 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1057 11 6 1.4343 -4.7344 0.2338 12 6 2.1777 -5.8949 0.3374 13 6 3.5567 -5.8403 0.3249 14 6 4.2056 -4.6090 0.2018 15 6 5.6791 -4.5470 0.1875 16 7 6.3754 -5.6371 0.2898 17 7 7.7751 -5.5781 0.2767 18 6 8.4983 -6.7103 0.3835 19 8 7.9373 -7.7806 0.4905 20 6 10.0039 -6.6470 0.3689 21 6 10.5752 -8.0600 0.5034 22 6 11.4051 -8.3707 1.7506 23 6 12.0925 -8.2220 0.3918 24 6 3.4540 -3.4379 0.0919 25 1 -0.4851 0.8401 0.0004 26 1 0.3555 -4.7834 0.2483 27 1 1.6778 -6.8475 0.4329 28 1 4.1341 -6.7490 0.4098 29 1 6.1785 -3.5942 0.0918 30 1 8.2237 -4.7223 0.1908 31 1 10.3400 -6.2074 -0.5702 32 1 10.3498 -6.0341 1.2012 33 1 9.9527 -8.8590 0.1007 34 1 11.5444 -7.5683 2.4751 35 1 11.3285 -9.3743 2.1689 36 1 12.4682 -9.1279 -0.0838 37 1 12.6837 -7.3221 0.2222 38 1 3.9495 -2.4831 -0.0038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814987506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:12 Heat of formation + Delta-G solvation = 25.966350 kcal Electronic energy + Delta-G solvation = -20731.648996 eV Core-core repulsion = 17348.816067 eV Total energy + Delta-G solvation = -3382.832929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88713 -39.08002 -37.57367 -36.87697 -35.84679 -32.82965 -32.21675 -30.46417 -29.24723 -28.48198 -25.40502 -23.73067 -22.72087 -21.76941 -21.48065 -20.45368 -20.07454 -18.22490 -17.56012 -16.81361 -16.68062 -15.94210 -15.43005 -15.09187 -14.67679 -14.37395 -14.32159 -13.93007 -13.74532 -13.68416 -13.21814 -12.85013 -12.45752 -12.34853 -11.86723 -11.82481 -11.73124 -11.32824 -10.91932 -10.91436 -10.84636 -10.72130 -10.51819 -10.39741 -10.19000 -9.95922 -9.47009 -9.34858 -8.84583 -7.90772 -7.28434 -6.48131 -4.08348 1.18533 2.27466 2.40380 2.43932 3.00142 3.09331 3.12309 3.13671 3.45553 3.92489 4.26165 4.29873 4.55414 4.56749 4.73488 4.78356 5.00157 5.04517 5.08481 5.13785 5.24516 5.25382 5.29434 5.55163 5.67562 5.74937 5.76416 5.91613 5.96384 6.12505 6.28163 6.59067 6.73185 6.98979 7.03073 7.14623 7.22286 7.33426 7.54670 7.69730 7.94860 8.35546 8.96849 9.66023 10.69692 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002673 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.481149 B =10472.343084 C =11576.251416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.146 3.854 11 C -0.169 4.169 12 C -0.086 4.086 13 C -0.163 4.163 14 C -0.025 4.025 15 C 0.133 3.867 16 N -0.244 5.244 17 N -0.590 5.590 18 C 0.531 3.469 19 O -0.505 6.505 20 C -0.104 4.104 21 C -0.142 4.142 22 C -0.178 4.178 23 C -0.179 4.179 24 C -0.200 4.200 25 H 0.271 0.729 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.382 0.618 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.823 -8.493 0.696 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.471 4.471 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.093 3.907 11 C -0.189 4.189 12 C -0.104 4.104 13 C -0.184 4.184 14 C -0.028 4.028 15 C -0.077 4.077 16 N -0.047 5.047 17 N -0.332 5.332 18 C 0.317 3.683 19 O -0.376 6.376 20 C -0.145 4.145 21 C -0.161 4.161 22 C -0.215 4.215 23 C -0.216 4.216 24 C -0.222 4.222 25 H 0.081 0.919 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.219 0.781 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.161 -10.064 0.850 21.660 hybrid contribution 0.975 2.308 -0.121 2.509 sum 20.136 -7.756 0.730 21.590 Atomic orbital electron populations 1.70023 1.05942 1.27808 1.45860 1.25273 0.95835 0.98791 0.96544 0.85801 0.78737 0.79894 0.79100 1.19531 1.20277 1.19532 1.21229 0.91668 0.80848 1.53315 0.89189 1.84013 1.33943 1.11269 1.78828 1.19175 0.89837 0.88342 0.93363 1.20435 0.99915 0.90321 1.08245 1.20655 0.93539 0.96997 0.99238 1.20894 0.94199 0.96635 1.06666 1.17990 0.87997 0.93969 1.02824 1.24658 0.94637 0.93928 0.94479 1.75058 0.89084 1.26340 1.14255 1.47076 1.02691 1.09840 1.73581 1.20498 0.88952 0.82935 0.75890 1.90716 1.72599 1.28344 1.45965 1.21210 0.90623 0.98054 1.04657 1.22050 0.93420 0.97208 1.03418 1.23054 1.04084 1.03224 0.91109 1.23009 0.94393 1.03437 1.00780 1.21187 0.93764 0.97627 1.09652 0.91932 0.86188 0.86486 0.86185 0.86786 0.78070 0.88121 0.88471 0.86169 0.88765 0.88598 0.88558 0.88701 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.64 13.67 55.48 0.76 -23.88 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.73 29.55 -169.99 -5.02 14.70 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.55 9.48 30.89 0.29 -10.26 16 8 H 0.09 2.18 5.20 -52.48 -0.27 1.90 16 9 O -0.18 -4.85 9.76 0.01 0.00 -4.85 16 10 C 0.15 3.38 6.64 -39.17 -0.26 3.12 16 11 C -0.17 -3.44 9.98 -39.30 -0.39 -3.83 16 12 C -0.09 -1.53 10.02 -39.67 -0.40 -1.93 16 13 C -0.16 -2.96 9.58 -39.11 -0.37 -3.33 16 14 C -0.03 -0.46 5.87 -105.07 -0.62 -1.07 16 15 C 0.13 2.02 10.75 -14.66 -0.16 1.86 16 16 N -0.24 -3.88 10.15 32.16 0.33 -3.55 16 17 N -0.59 -7.22 6.26 31.22 0.20 -7.02 16 18 C 0.53 6.68 7.95 -10.99 -0.09 6.59 16 19 O -0.50 -8.69 15.90 5.53 0.09 -8.60 16 20 C -0.10 -0.80 5.98 -27.88 -0.17 -0.96 16 21 C -0.14 -1.21 5.41 -90.62 -0.49 -1.70 16 22 C -0.18 -1.30 10.18 -26.73 -0.27 -1.58 16 23 C -0.18 -1.14 10.25 -26.73 -0.27 -1.42 16 24 C -0.20 -4.08 8.91 -38.96 -0.35 -4.43 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 27 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.12 2.13 7.55 -52.49 -0.40 1.73 16 29 H 0.11 1.35 8.02 -52.49 -0.42 0.93 16 30 H 0.38 3.14 8.65 -182.59 -1.58 1.56 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.55 7.88 -51.93 -0.41 0.14 16 33 H 0.12 1.28 7.30 -51.93 -0.38 0.90 16 34 H 0.09 0.61 8.03 -51.93 -0.42 0.19 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.13 2.59 5.63 -52.48 -0.30 2.29 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -33.27 338.37 -8.04 -41.31 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.84 Total: 4.77 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -3.64 Total: -17.98 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 1.28 Total: -34.45 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.27 -8.04 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814987506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.276 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds