Wall clock time and date at job start Tue Mar 31 2020 06:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48495 * 109.47388 * 240.00162 * 3 2 1 5 5 H 1.48498 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46613 * 120.00060 * 3 2 1 7 7 C 1.38653 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99845 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99819 * 185.06205 * 9 7 2 11 11 C 1.39023 * 119.98999 * 174.18296 * 10 9 7 12 12 C 1.38210 * 120.24594 * 179.76269 * 11 10 9 13 13 C 1.38018 * 120.23341 * 0.50979 * 12 11 10 14 14 C 1.39726 * 119.97645 * 359.74466 * 13 12 11 15 15 C 1.47496 * 120.12074 * 180.02562 * 14 13 12 16 16 N 1.29753 * 120.00087 * 359.97438 * 15 14 13 17 17 N 1.40101 * 119.99856 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00048 * 179.97438 * 17 16 15 19 19 O 1.21313 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00119 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.47002 * 180.02562 * 20 18 17 22 22 C 1.53003 * 117.49702 * 243.62252 * 21 20 18 23 23 C 1.53001 * 117.49402 * 175.00099 * 21 20 18 24 24 C 1.38573 * 119.99489 * 354.45449 * 10 9 7 25 25 H 0.97005 * 120.00183 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.87318 * 0.02562 * 11 10 9 27 27 H 1.08001 * 119.88596 * 180.23875 * 12 11 10 28 28 H 1.07997 * 120.01264 * 179.76641 * 13 12 11 29 29 H 1.07999 * 119.99372 * 179.97438 * 15 14 13 30 30 H 0.97005 * 119.99822 * 359.97438 * 17 16 15 31 31 H 1.08998 * 109.47294 * 300.00365 * 20 18 17 32 32 H 1.08998 * 109.47083 * 60.00084 * 20 18 17 33 33 H 1.08997 * 115.54986 * 29.33240 * 21 20 18 34 34 H 1.08998 * 117.49598 * 359.97438 * 22 21 20 35 35 H 1.08996 * 117.49648 * 145.01996 * 22 21 20 36 36 H 1.09001 * 117.49519 * 214.97342 * 23 21 20 37 37 H 1.08997 * 117.50481 * 359.97438 * 23 21 20 38 38 H 1.08004 * 120.11255 * 359.95860 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6962 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1057 11 6 1.4343 -4.7344 0.2338 12 6 2.1777 -5.8949 0.3374 13 6 3.5567 -5.8403 0.3249 14 6 4.2056 -4.6090 0.2018 15 6 5.6791 -4.5470 0.1875 16 7 6.3754 -5.6371 0.2898 17 7 7.7751 -5.5781 0.2767 18 6 8.4983 -6.7103 0.3835 19 8 7.9373 -7.7806 0.4905 20 6 10.0039 -6.6470 0.3689 21 6 10.5752 -8.0600 0.5034 22 6 11.4051 -8.3707 1.7506 23 6 12.0925 -8.2220 0.3918 24 6 3.4540 -3.4379 0.0919 25 1 -0.4851 0.8401 0.0004 26 1 0.3555 -4.7834 0.2483 27 1 1.6778 -6.8475 0.4329 28 1 4.1341 -6.7490 0.4098 29 1 6.1785 -3.5942 0.0918 30 1 8.2237 -4.7223 0.1908 31 1 10.3400 -6.2074 -0.5702 32 1 10.3498 -6.0341 1.2012 33 1 9.9527 -8.8590 0.1007 34 1 11.5444 -7.5683 2.4751 35 1 11.3285 -9.3743 2.1689 36 1 12.4682 -9.1279 -0.0838 37 1 12.6837 -7.3221 0.2222 38 1 3.9495 -2.4831 -0.0038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814987506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:12 Heat of formation + Delta-G solvation = 4.625906 kcal Electronic energy + Delta-G solvation = -20732.574387 eV Core-core repulsion = 17348.816067 eV Total energy + Delta-G solvation = -3383.758320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92105 -40.69937 -38.65799 -38.01969 -37.14639 -34.35641 -33.82212 -31.68811 -30.60160 -29.69209 -27.30329 -25.04669 -23.30572 -23.22221 -22.50908 -21.65511 -21.02272 -19.88449 -18.89508 -18.06454 -17.99572 -16.75845 -16.73378 -16.33987 -16.22132 -15.95273 -15.51994 -15.29687 -14.95915 -14.83612 -14.36871 -14.15018 -14.13191 -13.50704 -13.41974 -12.86775 -12.50088 -12.45788 -12.44030 -12.38084 -12.32031 -12.12425 -11.39605 -11.35947 -11.26250 -11.03567 -10.84526 -10.81122 -10.50790 -9.34732 -8.94890 -8.42035 -6.10709 -0.18447 0.70396 1.23113 1.39792 1.43282 1.50594 1.55840 1.85582 2.21632 2.89461 2.90341 3.21531 3.44143 3.54154 3.66117 3.72724 3.97682 4.04085 4.15236 4.26973 4.35493 4.37296 4.49580 4.59249 4.63130 4.72241 4.79825 4.82017 5.05319 5.06043 5.13279 5.19849 5.27948 5.33670 5.61239 5.65750 5.66002 6.04528 6.10454 6.12908 6.47965 7.02383 7.37731 7.81844 8.80731 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002673 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.481149 B =10472.343084 C =11576.251416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.256 1.256 7 C -0.413 4.413 8 H 0.108 0.892 9 O -0.229 6.229 10 C 0.112 3.888 11 C -0.182 4.182 12 C -0.075 4.075 13 C -0.158 4.158 14 C -0.021 4.021 15 C 0.132 3.868 16 N -0.270 5.270 17 N -0.578 5.578 18 C 0.526 3.474 19 O -0.559 6.559 20 C -0.090 4.090 21 C -0.165 4.165 22 C -0.185 4.185 23 C -0.159 4.159 24 C -0.200 4.200 25 H 0.271 0.729 26 H 0.120 0.880 27 H 0.153 0.847 28 H 0.129 0.871 29 H 0.150 0.850 30 H 0.406 0.594 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.722 -8.274 0.778 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.837 3.163 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.489 4.489 8 H 0.125 0.875 9 O -0.135 6.135 10 C 0.061 3.939 11 C -0.202 4.202 12 C -0.093 4.093 13 C -0.179 4.179 14 C -0.024 4.024 15 C -0.078 4.078 16 N -0.074 5.074 17 N -0.323 5.323 18 C 0.315 3.685 19 O -0.434 6.434 20 C -0.131 4.131 21 C -0.184 4.184 22 C -0.222 4.222 23 C -0.196 4.196 24 C -0.222 4.222 25 H 0.080 0.920 26 H 0.138 0.862 27 H 0.170 0.830 28 H 0.147 0.853 29 H 0.167 0.833 30 H 0.247 0.753 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 23.110 -9.872 0.930 25.148 hybrid contribution -0.068 1.868 -0.125 1.874 sum 23.042 -8.004 0.806 24.406 Atomic orbital electron populations 1.70186 1.08106 1.28785 1.48884 1.26589 0.96803 1.02804 0.95955 0.84658 0.77377 0.74246 0.80032 1.17906 1.20249 1.17997 1.21817 0.92709 0.81236 1.53092 0.87450 1.83986 1.35640 1.12432 1.81466 1.19698 0.91258 0.88113 0.94793 1.20654 1.00376 0.90452 1.08725 1.21003 0.93525 0.97483 0.97265 1.21186 0.94463 0.97097 1.05121 1.18207 0.90036 0.93026 1.01113 1.24521 0.92990 0.95391 0.94947 1.74897 0.91614 1.27542 1.13388 1.47007 1.01172 1.11235 1.72863 1.21562 0.90826 0.81997 0.74102 1.90699 1.73943 1.30357 1.48413 1.21279 0.86311 0.98106 1.07368 1.21997 0.94577 0.97026 1.04813 1.23159 1.04023 1.03397 0.91600 1.23101 0.92655 1.04479 0.99379 1.21239 0.92823 0.98742 1.09404 0.91969 0.86180 0.82974 0.85285 0.83281 0.75297 0.85141 0.85537 0.89245 0.87493 0.89313 0.88318 0.86539 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.14 13.67 21.61 0.30 -54.84 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 3 Si 1.02 40.66 29.55 68.60 2.03 42.69 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.41 -22.72 9.48 67.92 0.64 -22.08 16 8 H 0.11 5.23 5.20 -2.91 -0.02 5.22 16 9 O -0.23 -13.16 9.76 -22.86 -0.22 -13.38 16 10 C 0.11 5.30 6.64 22.54 0.15 5.45 16 11 C -0.18 -7.51 9.98 22.45 0.22 -7.29 16 12 C -0.07 -2.57 10.02 22.21 0.22 -2.34 16 13 C -0.16 -5.46 9.58 22.58 0.22 -5.24 16 14 C -0.02 -0.74 5.87 -20.15 -0.12 -0.86 16 15 C 0.13 3.64 10.75 87.44 0.94 4.58 16 16 N -0.27 -7.95 10.15 -52.16 -0.53 -8.48 16 17 N -0.58 -12.41 6.26 -173.51 -1.09 -13.50 16 18 C 0.53 12.10 7.95 87.66 0.70 12.79 16 19 O -0.56 -18.99 15.90 -3.13 -0.05 -19.04 16 20 C -0.09 -1.07 5.98 29.85 0.18 -0.89 16 21 C -0.17 -2.51 5.41 -10.79 -0.06 -2.57 16 22 C -0.18 -2.33 10.18 30.60 0.31 -2.02 16 23 C -0.16 -1.56 10.25 30.60 0.31 -1.25 16 24 C -0.20 -8.11 8.91 22.67 0.20 -7.91 16 25 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 26 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 27 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 28 H 0.13 4.31 7.55 -2.91 -0.02 4.29 16 29 H 0.15 2.97 8.02 -2.91 -0.02 2.95 16 30 H 0.41 5.00 8.65 -213.31 -1.85 3.16 16 31 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.13 0.82 7.88 -2.39 -0.02 0.80 16 33 H 0.09 1.93 7.30 -2.39 -0.02 1.91 16 34 H 0.11 1.06 8.03 -2.39 -0.02 1.04 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.12 0.66 8.14 -2.39 -0.02 0.65 16 38 H 0.14 5.29 5.63 -2.91 -0.02 5.27 16 Total: -1.00 -77.55 338.37 4.07 -73.48 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.75 Total: 23.54 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 4.39 Total: -30.47 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -1.32 Total: -76.82 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.27 Total: -32.42 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -77.55 4.07 -73.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814987506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.106 kcal (2) G-P(sol) polarization free energy of solvation -77.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds