Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48500 * 109.47300 * 240.00107 * 3 2 1 5 5 H 1.48500 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46883 * 120.00403 * 3 2 1 7 7 C 1.37870 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00236 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47562 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47109 * 179.97438 * 10 9 7 12 12 O 1.45204 * 109.46870 * 179.97438 * 11 10 9 13 13 C 1.34225 * 116.99993 * 180.02562 * 12 11 10 14 14 O 1.20830 * 119.99933 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00137 * 180.02562 * 13 12 11 16 16 N 1.46496 * 109.47159 * 179.97438 * 15 13 12 17 17 C 1.33994 * 125.02161 * 125.00154 * 16 15 13 18 18 C 1.38239 * 107.90850 * 179.73254 * 17 16 15 19 19 C 1.41129 * 134.82115 * 180.02562 * 18 17 16 20 20 C 1.35657 * 119.53992 * 180.02562 * 19 18 17 21 21 C 1.39679 * 121.72453 * 359.97438 * 20 19 18 22 22 C 1.35644 * 121.81877 * 0.02562 * 21 20 19 23 23 C 1.41151 * 119.59359 * 359.97438 * 22 21 20 24 24 N 1.32059 * 134.67945 * 180.02562 * 23 22 21 25 25 H 0.97001 * 120.00238 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47261 * 59.99974 * 9 7 2 27 27 H 1.09002 * 109.47032 * 300.00186 * 9 7 2 28 28 H 1.08999 * 109.46563 * 59.99679 * 10 9 7 29 29 H 1.09003 * 109.46648 * 299.99881 * 10 9 7 30 30 H 1.09006 * 109.46785 * 60.00590 * 11 10 9 31 31 H 1.08994 * 109.47225 * 300.00168 * 11 10 9 32 32 H 1.08997 * 109.47173 * 59.99718 * 15 13 12 33 33 H 1.09000 * 109.46801 * 299.99768 * 15 13 12 34 34 H 1.07999 * 126.04338 * 359.74942 * 17 16 15 35 35 H 1.08001 * 120.22739 * 0.02562 * 19 18 17 36 36 H 1.07993 * 119.13777 * 179.97438 * 20 19 18 37 37 H 1.07994 * 119.09358 * 179.97438 * 21 20 19 38 38 H 1.07993 * 120.20354 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 8 2.4238 -6.0908 -0.0030 13 6 1.9108 -7.3311 -0.0033 14 8 0.7129 -7.4894 -0.0015 15 6 2.8288 -8.5262 -0.0045 16 7 2.0309 -9.7548 -0.0039 17 6 2.1389 -10.7423 -0.9031 18 6 1.2283 -11.7261 -0.5656 19 6 0.8712 -12.9794 -1.1075 20 6 -0.0978 -13.7156 -0.5080 21 6 -0.7574 -13.2672 0.6387 22 6 -0.4641 -12.0732 1.2116 23 6 0.5338 -11.2532 0.6423 24 7 1.0470 -10.0732 0.9392 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8726 -3.6047 0.8877 29 1 2.8712 -3.6039 -0.8923 30 1 0.8526 -5.0447 -0.8906 31 1 0.8546 -5.0450 0.8894 32 1 3.4583 -8.5018 0.8849 33 1 3.4569 -8.5009 -0.8950 34 1 2.8177 -10.7657 -1.7429 35 1 1.3659 -13.3497 -1.9932 36 1 -0.3662 -14.6735 -0.9283 37 1 -1.5226 -13.8879 1.0808 38 1 -0.9903 -11.7523 2.0984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837968744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = 4.903889 kcal Electronic energy + Delta-G solvation = -20924.734786 eV Core-core repulsion = 17540.988520 eV Total energy + Delta-G solvation = -3383.746266 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.60211 -40.26550 -37.59822 -36.52278 -34.07522 -33.21765 -32.05014 -31.70769 -29.06290 -28.56542 -26.94979 -24.06804 -23.00527 -22.19887 -21.08264 -20.69567 -20.37051 -17.91552 -17.56136 -17.20284 -16.63660 -16.43696 -16.13517 -15.83299 -14.99267 -14.51220 -14.40210 -14.26316 -14.12947 -13.34055 -13.23546 -13.15958 -12.25708 -12.18736 -12.09559 -11.95030 -11.81624 -11.68825 -10.99439 -10.79697 -10.71393 -10.59542 -10.48742 -10.46779 -10.35632 -9.79684 -9.57188 -9.22435 -8.87226 -8.41965 -7.82221 -6.06563 -4.10208 0.38206 1.64106 1.77004 2.08247 2.21165 2.72053 3.30006 3.34629 3.36797 3.68859 3.90908 4.23445 4.39233 4.51154 4.58366 4.61988 4.77451 4.89609 5.08872 5.20540 5.29174 5.34793 5.48466 5.49392 5.52288 5.88884 5.92274 6.26938 6.30518 6.32537 6.39820 6.46195 6.46800 6.71003 6.73227 6.90819 7.42822 7.55380 7.65954 7.70463 7.90957 8.31399 8.95711 9.54227 11.04787 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.048596 B = 0.002226 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.045608 B =12573.872654 C =12894.183927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.071 3.929 12 O -0.356 6.356 13 C 0.442 3.558 14 O -0.479 6.479 15 C 0.134 3.866 16 N -0.317 5.317 17 C 0.078 3.922 18 C -0.206 4.206 19 C -0.043 4.043 20 C -0.157 4.157 21 C -0.083 4.083 22 C -0.097 4.097 23 C 0.097 3.903 24 N -0.275 5.275 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.188 0.812 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.550 -27.411 -2.235 28.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.002 4.002 12 O -0.272 6.272 13 C 0.281 3.719 14 O -0.364 6.364 15 C 0.011 3.989 16 N -0.092 5.092 17 C -0.076 4.076 18 C -0.215 4.215 19 C -0.063 4.063 20 C -0.177 4.177 21 C -0.105 4.105 22 C -0.118 4.118 23 C -0.057 4.057 24 N -0.101 5.101 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.205 0.795 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.067 -26.086 -1.388 26.609 hybrid contribution 0.307 0.452 -0.612 0.820 sum 5.374 -25.633 -2.000 26.267 Atomic orbital electron populations 1.69954 1.06101 1.26948 1.50285 1.25038 0.94897 0.99410 0.95148 0.86589 0.79517 0.82827 0.78665 1.20169 1.21238 1.20158 1.21114 0.93070 0.90634 1.51327 0.92450 1.19054 0.93826 0.90692 0.97738 1.21786 0.99983 0.90784 1.02044 1.23589 0.91107 0.83109 1.02402 1.86457 1.42854 1.14603 1.83284 1.23153 0.88698 0.85320 0.74710 1.90780 1.16207 1.86424 1.43036 1.21222 0.90970 0.78295 1.08434 1.48089 1.27479 1.13869 1.19771 1.22631 1.00623 0.88755 0.95589 1.19568 1.02672 0.98473 1.00814 1.20207 0.96397 0.91388 0.98346 1.20508 0.98834 1.00708 0.97647 1.20638 0.98920 0.95419 0.95544 1.19919 0.97125 0.93761 1.01037 1.21031 0.97204 0.92290 0.95224 1.77903 1.05122 1.14915 1.12139 0.92780 0.96235 0.96189 0.92019 0.92057 0.91390 0.91259 0.84672 0.83867 0.79523 0.85982 0.86154 0.85735 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.19 5.53 -26.73 -0.15 -2.34 16 11 C 0.07 1.27 5.47 37.16 0.20 1.48 16 12 O -0.36 -5.46 10.22 -39.25 -0.40 -5.86 16 13 C 0.44 6.31 7.98 36.00 0.29 6.60 16 14 O -0.48 -8.89 15.43 -18.75 -0.29 -9.18 16 15 C 0.13 1.18 7.04 -5.20 -0.04 1.15 16 16 N -0.32 -3.67 3.35 -62.01 -0.21 -3.87 16 17 C 0.08 0.71 11.45 -16.61 -0.19 0.52 16 18 C -0.21 -2.28 6.33 -105.19 -0.67 -2.94 16 19 C -0.04 -0.38 10.09 -39.41 -0.40 -0.77 16 20 C -0.16 -1.31 9.90 -39.97 -0.40 -1.70 16 21 C -0.08 -0.74 9.89 -39.97 -0.40 -1.14 16 22 C -0.10 -1.11 10.08 -39.40 -0.40 -1.51 16 23 C 0.10 1.33 7.49 -83.05 -0.62 0.71 16 24 N -0.28 -4.18 11.56 33.26 0.38 -3.80 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 32 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.14 0.61 8.04 -51.93 -0.42 0.19 16 34 H 0.19 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -36.13 336.86 -8.06 -44.20 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -5.03 Total: -4.04 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -3.31 Total: -12.89 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.91 Total: -33.71 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.69 Total: -15.05 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.13 -8.06 -44.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837968744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.101 kcal (2) G-P(sol) polarization free energy of solvation -36.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds