Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48500 * 109.47300 * 240.00107 * 3 2 1 5 5 H 1.48500 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46883 * 120.00403 * 3 2 1 7 7 C 1.37870 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00236 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47562 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47109 * 179.97438 * 10 9 7 12 12 O 1.45204 * 109.46870 * 179.97438 * 11 10 9 13 13 C 1.34225 * 116.99993 * 180.02562 * 12 11 10 14 14 O 1.20830 * 119.99933 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00137 * 180.02562 * 13 12 11 16 16 N 1.46496 * 109.47159 * 179.97438 * 15 13 12 17 17 C 1.33994 * 125.02161 * 125.00154 * 16 15 13 18 18 C 1.38239 * 107.90850 * 179.73254 * 17 16 15 19 19 C 1.41129 * 134.82115 * 180.02562 * 18 17 16 20 20 C 1.35657 * 119.53992 * 180.02562 * 19 18 17 21 21 C 1.39679 * 121.72453 * 359.97438 * 20 19 18 22 22 C 1.35644 * 121.81877 * 0.02562 * 21 20 19 23 23 C 1.41151 * 119.59359 * 359.97438 * 22 21 20 24 24 N 1.32059 * 134.67945 * 180.02562 * 23 22 21 25 25 H 0.97001 * 120.00238 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47261 * 59.99974 * 9 7 2 27 27 H 1.09002 * 109.47032 * 300.00186 * 9 7 2 28 28 H 1.08999 * 109.46563 * 59.99679 * 10 9 7 29 29 H 1.09003 * 109.46648 * 299.99881 * 10 9 7 30 30 H 1.09006 * 109.46785 * 60.00590 * 11 10 9 31 31 H 1.08994 * 109.47225 * 300.00168 * 11 10 9 32 32 H 1.08997 * 109.47173 * 59.99718 * 15 13 12 33 33 H 1.09000 * 109.46801 * 299.99768 * 15 13 12 34 34 H 1.07999 * 126.04338 * 359.74942 * 17 16 15 35 35 H 1.08001 * 120.22739 * 0.02562 * 19 18 17 36 36 H 1.07993 * 119.13777 * 179.97438 * 20 19 18 37 37 H 1.07994 * 119.09358 * 179.97438 * 21 20 19 38 38 H 1.07993 * 120.20354 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 8 2.4238 -6.0908 -0.0030 13 6 1.9108 -7.3311 -0.0033 14 8 0.7129 -7.4894 -0.0015 15 6 2.8288 -8.5262 -0.0045 16 7 2.0309 -9.7548 -0.0039 17 6 2.1389 -10.7423 -0.9031 18 6 1.2283 -11.7261 -0.5656 19 6 0.8712 -12.9794 -1.1075 20 6 -0.0978 -13.7156 -0.5080 21 6 -0.7574 -13.2672 0.6387 22 6 -0.4641 -12.0732 1.2116 23 6 0.5338 -11.2532 0.6423 24 7 1.0470 -10.0732 0.9392 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8726 -3.6047 0.8877 29 1 2.8712 -3.6039 -0.8923 30 1 0.8526 -5.0447 -0.8906 31 1 0.8546 -5.0450 0.8894 32 1 3.4583 -8.5018 0.8849 33 1 3.4569 -8.5009 -0.8950 34 1 2.8177 -10.7657 -1.7429 35 1 1.3659 -13.3497 -1.9932 36 1 -0.3662 -14.6735 -0.9283 37 1 -1.5226 -13.8879 1.0808 38 1 -0.9903 -11.7523 2.0984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837968744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = -17.301021 kcal Electronic energy + Delta-G solvation = -20925.697664 eV Core-core repulsion = 17540.988520 eV Total energy + Delta-G solvation = -3384.709143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.40618 -41.43769 -38.41454 -37.75135 -35.98162 -34.10239 -33.63329 -32.72195 -29.88436 -29.57597 -28.54887 -25.50528 -24.26752 -22.93167 -22.22847 -22.07917 -21.45127 -19.05485 -18.61664 -18.31410 -18.10324 -17.58692 -17.19657 -16.69671 -16.49633 -16.03349 -15.66218 -15.02549 -14.89255 -14.62657 -14.23048 -14.09037 -13.98275 -13.78683 -13.58268 -12.81680 -12.79656 -12.55656 -12.55063 -12.44658 -12.39054 -12.13378 -11.92266 -11.50950 -11.47654 -11.30599 -11.23890 -11.14050 -10.59004 -9.64088 -8.57102 -8.23555 -6.35745 -0.32267 0.91034 0.97111 1.00165 1.40568 1.44036 1.44596 1.52018 1.73573 2.39924 2.96056 3.10285 3.20000 3.40990 3.72017 3.90935 3.95078 3.99430 4.04840 4.17432 4.26664 4.34832 4.40461 4.54547 4.66873 4.75466 4.79984 4.87839 5.04181 5.21086 5.31734 5.46997 5.55138 5.59858 5.60500 5.71644 5.77416 5.79439 6.07974 6.15876 6.53469 6.64470 6.80392 7.34106 8.88528 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.048596 B = 0.002226 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.045608 B =12573.872654 C =12894.183927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.024 3.976 10 C -0.092 4.092 11 C 0.081 3.919 12 O -0.347 6.347 13 C 0.440 3.560 14 O -0.529 6.529 15 C 0.140 3.860 16 N -0.328 5.328 17 C 0.103 3.897 18 C -0.235 4.235 19 C -0.036 4.036 20 C -0.173 4.173 21 C -0.066 4.066 22 C -0.144 4.144 23 C 0.072 3.928 24 N -0.346 5.346 25 H 0.264 0.736 26 H -0.005 1.005 27 H -0.007 1.007 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.161 0.839 33 H 0.202 0.798 34 H 0.244 0.756 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.413 -28.869 -3.998 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.087 0.913 9 C -0.013 4.013 10 C -0.129 4.129 11 C 0.008 3.992 12 O -0.263 6.263 13 C 0.282 3.718 14 O -0.417 6.417 15 C 0.018 3.982 16 N -0.103 5.103 17 C -0.051 4.051 18 C -0.245 4.245 19 C -0.056 4.056 20 C -0.192 4.192 21 C -0.088 4.088 22 C -0.166 4.166 23 C -0.082 4.082 24 N -0.172 5.172 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.011 0.989 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.178 0.822 33 H 0.219 0.781 34 H 0.260 0.740 35 H 0.175 0.825 36 H 0.169 0.831 37 H 0.167 0.833 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.954 -27.566 -3.141 28.862 hybrid contribution -0.600 0.773 -0.111 0.985 sum 7.354 -26.793 -3.252 27.974 Atomic orbital electron populations 1.70104 1.07995 1.28029 1.51407 1.26062 0.95805 1.03720 0.94593 0.85408 0.78144 0.77566 0.79378 1.18812 1.21100 1.18995 1.21594 0.93843 0.91704 1.50927 0.91339 1.18948 0.94342 0.92740 0.95272 1.21457 0.98649 0.89866 1.02953 1.23126 0.90947 0.83660 1.01507 1.86441 1.41620 1.14797 1.83466 1.24350 0.89064 0.85762 0.72621 1.90776 1.18762 1.86802 1.45350 1.21705 0.89398 0.74659 1.12389 1.48298 1.27326 1.14923 1.19783 1.23560 0.99518 0.86850 0.95175 1.20080 1.03590 1.00182 1.00634 1.20661 0.95906 0.90189 0.98883 1.20917 0.98842 1.02038 0.97404 1.21026 0.98356 0.94272 0.95173 1.20093 0.98714 0.95436 1.02312 1.21482 0.97749 0.92361 0.96619 1.77789 1.07949 1.16509 1.14989 0.92697 0.98628 0.98888 0.91227 0.90799 0.92048 0.92639 0.82161 0.78100 0.74010 0.82507 0.83138 0.83299 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 13.29 21.44 0.28 -57.04 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.09 -3.70 5.53 30.60 0.17 -3.53 16 11 C 0.08 2.98 5.47 71.98 0.39 3.38 16 12 O -0.35 -10.30 10.22 -51.37 -0.53 -10.82 16 13 C 0.44 12.22 7.98 71.24 0.57 12.79 16 14 O -0.53 -20.25 15.43 21.95 0.34 -19.91 16 15 C 0.14 2.06 7.04 85.63 0.60 2.67 16 16 N -0.33 -7.08 3.35 -350.09 -1.17 -8.25 16 17 C 0.10 1.56 11.45 84.36 0.97 2.53 16 18 C -0.24 -4.85 6.33 -20.23 -0.13 -4.97 16 19 C -0.04 -0.54 10.09 22.38 0.23 -0.31 16 20 C -0.17 -2.48 9.90 22.02 0.22 -2.26 16 21 C -0.07 -1.15 9.89 22.02 0.22 -0.93 16 22 C -0.14 -3.53 10.08 22.38 0.23 -3.30 16 23 C 0.07 2.03 7.49 42.16 0.32 2.35 16 24 N -0.35 -10.92 11.56 -48.70 -0.56 -11.48 16 25 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 30 H 0.06 2.32 8.13 -2.38 -0.02 2.30 16 31 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 32 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.20 0.57 8.04 -2.39 -0.02 0.55 16 34 H 0.24 0.56 8.06 -2.91 -0.02 0.54 16 35 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 36 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.12 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -84.61 336.86 6.06 -78.54 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.06 Total: 3.38 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 4.62 Total: -20.24 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -1.45 Total: -76.77 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -0.19 Total: -30.74 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -84.61 6.06 -78.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837968744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.243 kcal (2) G-P(sol) polarization free energy of solvation -84.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds