Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81405 * 102.99658 * 2 1 4 4 C 1.53002 * 109.46732 * 179.97438 * 3 2 1 5 5 C 1.52998 * 115.55000 * 56.98710 * 4 3 2 6 6 C 1.50697 * 109.46916 * 65.33332 * 5 4 3 7 7 O 1.20825 * 120.00362 * 5.79240 * 6 5 4 8 8 O 1.34238 * 119.99940 * 185.78859 * 6 5 4 9 9 C 1.45197 * 116.99781 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46634 * 180.02562 * 9 8 6 11 11 O 1.42896 * 109.47509 * 65.00360 * 10 9 8 12 12 C 1.42895 * 114.00140 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46808 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00432 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00019 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00353 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99752 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.46864 * 90.00276 * 17 15 13 19 19 H 1.48502 * 109.47161 * 209.99856 * 17 15 13 20 20 H 1.48497 * 109.47350 * 330.00561 * 17 15 13 21 21 C 1.52999 * 117.49721 * 271.31432 * 4 3 2 22 22 C 1.53005 * 117.49743 * 202.65613 * 4 3 2 23 23 H 1.08997 * 109.47172 * 299.99909 * 1 2 3 24 24 H 1.09002 * 109.47262 * 60.00064 * 1 2 3 25 25 H 1.09003 * 109.47292 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47515 * 299.99903 * 3 2 1 27 27 H 1.09004 * 109.46895 * 59.99968 * 3 2 1 28 28 H 1.08995 * 109.46954 * 185.33015 * 5 4 3 29 29 H 1.08991 * 109.47043 * 305.33183 * 5 4 3 30 30 H 1.08992 * 109.47391 * 299.99910 * 9 8 6 31 31 H 1.09005 * 109.47184 * 60.00233 * 9 8 6 32 32 H 1.09006 * 109.46985 * 185.00150 * 10 9 8 33 33 H 1.08999 * 109.47022 * 304.99844 * 10 9 8 34 34 H 1.08995 * 109.47211 * 299.99326 * 12 11 10 35 35 H 1.08996 * 109.47538 * 59.99844 * 12 11 10 36 36 H 0.96999 * 120.00062 * 179.97438 * 16 15 13 37 37 H 1.08998 * 117.50516 * 0.02562 * 21 4 3 38 38 H 1.09003 * 117.50027 * 145.02541 * 21 4 3 39 39 H 1.08998 * 117.49606 * 214.98339 * 22 4 3 40 40 H 1.09001 * 117.49685 * 0.02562 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.4832 1.2670 -1.1565 6 6 4.0890 1.9230 -2.4546 7 8 3.3793 2.9008 -2.4463 8 8 4.5264 1.4211 -3.6202 9 6 4.1065 2.1039 -4.8309 10 6 4.6986 1.3923 -6.0491 11 8 4.1483 0.0772 -6.1467 12 6 4.6376 -0.6767 -7.2576 13 6 3.9945 -2.0396 -7.2621 14 1 3.2829 -2.3036 -6.4937 15 6 4.3138 -2.9493 -8.2478 16 7 3.7530 -4.1388 -8.2515 17 14 5.5429 -2.4920 -9.5782 18 1 6.9111 -2.8649 -9.1372 19 1 5.2110 -3.2190 -10.8298 20 1 5.4839 -1.0289 -9.8249 21 6 4.4471 1.9888 1.3577 22 6 4.3028 3.2642 0.5236 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8031 2.2372 -0.8899 27 1 1.8030 2.2371 0.8900 28 1 5.5581 1.3706 -1.0088 29 1 4.2213 0.2095 -1.1895 30 1 3.0186 2.0913 -4.8965 31 1 4.4571 3.1357 -4.8063 32 1 4.4576 1.9548 -6.9511 33 1 5.7811 1.3261 -5.9406 34 1 4.3949 -0.1570 -8.1845 35 1 5.7190 -0.7858 -7.1747 36 1 3.9773 -4.7786 -8.9452 37 1 3.8279 1.8977 2.2501 38 1 5.4389 1.5418 1.4262 39 1 5.1997 3.6556 0.0434 40 1 3.5885 4.0122 0.8675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845349721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -113.769727 kcal Electronic energy + Delta-G solvation = -20504.196405 eV Core-core repulsion = 17218.455265 eV Total energy + Delta-G solvation = -3285.741140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.123 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.48596 -38.39585 -37.05760 -35.93606 -32.68687 -30.85785 -29.76544 -29.34424 -28.26938 -27.48215 -22.91060 -22.65875 -21.87298 -21.28288 -19.37212 -17.61203 -16.98299 -16.76034 -16.48691 -15.79241 -15.59077 -15.46268 -14.86495 -14.77839 -14.38239 -14.09178 -13.82595 -13.40671 -13.29436 -13.04679 -12.65163 -12.51927 -12.39194 -12.08123 -11.81447 -11.67854 -11.65374 -11.13867 -10.86969 -10.74046 -10.64366 -10.53853 -10.43916 -10.22757 -9.86617 -9.70514 -9.19326 -8.89582 -8.49724 -7.75640 -6.10876 -4.10119 1.50203 2.32431 2.46382 2.74317 3.24833 3.31659 3.32499 3.60770 4.24677 4.35402 4.43081 4.48333 4.49637 4.65179 4.94619 4.97531 5.02499 5.13002 5.17440 5.20099 5.32902 5.38249 5.39619 5.47692 5.55942 5.58675 5.65062 5.70919 5.76982 5.82057 5.84633 5.99844 6.56296 6.63114 6.97522 7.58363 7.89583 7.97821 8.64707 9.01136 9.47840 11.02164 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.019114 B = 0.003348 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.550455 B = 8361.097589 C = 9244.318486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.256 6.256 3 C -0.050 4.050 4 C -0.100 4.100 5 C -0.081 4.081 6 C 0.466 3.534 7 O -0.514 6.514 8 O -0.341 6.341 9 C 0.075 3.925 10 C 0.057 3.943 11 O -0.374 6.374 12 C 0.168 3.832 13 C -0.519 4.519 14 H 0.083 0.917 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.267 1.267 21 C -0.161 4.161 22 C -0.153 4.153 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.003 0.997 35 H 0.000 1.000 36 H 0.267 0.733 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.191 15.155 18.386 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.029 6.029 3 C -0.198 4.198 4 C -0.101 4.101 5 C -0.118 4.118 6 C 0.309 3.691 7 O -0.403 6.403 8 O -0.257 6.257 9 C 0.001 3.999 10 C -0.020 4.020 11 O -0.294 6.294 12 C 0.093 3.907 13 C -0.557 4.557 14 H 0.101 0.899 15 C -0.129 4.129 16 N -0.533 5.533 17 Si 0.703 3.297 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.198 4.198 22 C -0.192 4.192 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.126 0.874 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.021 0.979 35 H 0.018 0.982 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.473 14.294 18.357 23.271 hybrid contribution -0.162 1.332 -1.127 1.752 sum 0.311 15.626 17.231 23.263 Atomic orbital electron populations 1.23389 0.94398 1.06661 1.04727 1.86968 1.07179 1.10774 1.97999 1.22973 0.96505 0.94755 1.05602 1.20617 0.92199 1.02296 0.95007 1.20913 1.01684 1.02101 0.87145 1.23515 0.77279 0.82113 0.86152 1.90600 1.35352 1.26206 1.88121 1.86604 1.68429 1.55921 1.14753 1.23138 1.00990 0.94756 0.80978 1.22397 0.97748 0.87386 0.94496 1.87987 1.67180 1.23409 1.50786 1.20632 0.93859 0.92093 0.84101 1.20889 1.26376 0.95151 1.13302 0.89871 1.24765 0.96105 0.94662 0.97402 1.69874 1.43206 1.05758 1.34464 0.86852 0.82006 0.79086 0.81798 1.19877 1.20775 1.19133 1.23162 1.01993 1.01134 0.93484 1.23051 1.02814 0.90678 1.02669 0.90759 0.90421 0.87914 0.88559 0.90073 0.87366 0.86296 0.90454 0.90448 0.91918 0.93089 0.97886 0.98182 0.92349 0.88133 0.88105 0.88386 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.76 101.05 1.09 -0.05 16 2 S -0.26 -3.02 21.21 -107.50 -2.28 -5.30 16 3 C -0.05 -0.54 5.59 37.16 0.21 -0.33 16 4 C -0.10 -0.99 1.10 -154.51 -0.17 -1.16 16 5 C -0.08 -0.92 5.48 -27.89 -0.15 -1.07 16 6 C 0.47 6.78 7.77 36.00 0.28 7.06 16 7 O -0.51 -8.04 14.32 -18.75 -0.27 -8.31 16 8 O -0.34 -5.68 10.19 -42.04 -0.43 -6.11 16 9 C 0.08 1.17 5.84 37.16 0.22 1.39 16 10 C 0.06 1.00 6.33 37.16 0.24 1.24 16 11 O -0.37 -8.89 10.30 -38.80 -0.40 -9.29 16 12 C 0.17 4.30 4.76 36.01 0.17 4.48 16 13 C -0.52 -15.62 9.99 -34.44 -0.34 -15.97 16 14 H 0.08 2.75 8.06 -52.48 -0.42 2.33 16 15 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -27.76 13.96 55.43 0.77 -26.99 16 17 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 21 C -0.16 -1.23 9.92 -26.69 -0.26 -1.49 16 22 C -0.15 -1.28 9.86 -26.69 -0.26 -1.54 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.10 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.10 1.20 6.74 -51.93 -0.35 0.85 16 27 H 0.08 0.72 8.10 -51.92 -0.42 0.30 16 28 H 0.11 0.98 8.09 -51.93 -0.42 0.56 16 29 H 0.12 1.46 7.17 -51.93 -0.37 1.08 16 30 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 31 H 0.08 0.99 8.13 -51.93 -0.42 0.56 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.00 0.09 7.20 -51.93 -0.37 -0.29 16 35 H 0.00 0.01 7.57 -51.93 -0.39 -0.38 16 36 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 351.85 15.07 5.30 5.30 Total: -1.00 -33.83 351.85 -7.63 -41.46 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -6.57 Total: -2.07 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 0.91 Total: -5.41 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.99 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -1.10 Total: -23.71 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.28 Total: -5.30 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.83 -7.63 -41.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845349721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.306 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds