Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86793 * 120.00156 * 2 1 4 4 H 1.48497 * 109.47111 * 240.00495 * 3 2 1 5 5 H 1.48510 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47240 * 120.00136 * 3 2 1 7 7 C 1.39929 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00261 * 196.78353 * 7 2 1 9 9 C 1.41412 * 119.99798 * 16.78872 * 7 2 1 10 10 C 1.40786 * 120.20640 * 205.16836 * 9 7 2 11 11 C 1.37640 * 119.88171 * 179.97438 * 10 9 7 12 12 C 1.38530 * 120.32365 * 359.74609 * 11 10 9 13 13 C 1.39250 * 120.42932 * 0.51024 * 12 11 10 14 14 N 1.39936 * 119.94572 * 179.76347 * 13 12 11 15 15 C 1.34766 * 120.00253 * 325.55145 * 14 13 12 16 16 O 1.21293 * 120.00063 * 354.89419 * 15 14 13 17 17 C 1.50700 * 120.00170 * 174.89178 * 15 14 13 18 18 C 1.53002 * 109.47331 * 180.02562 * 17 15 14 19 19 H 1.08999 * 110.21401 * 55.47437 * 18 17 15 20 20 C 1.54477 * 110.32086 * 177.45868 * 18 17 15 21 21 C 1.54626 * 101.76934 * 93.62159 * 20 18 17 22 22 C 1.51287 * 104.19351 * 24.79721 * 21 20 18 23 23 O 1.21281 * 124.94068 * 163.78394 * 22 21 20 24 24 N 1.34421 * 110.11528 * 343.75013 * 22 21 20 25 25 C 1.38279 * 120.10162 * 359.48949 * 13 12 11 26 26 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.05253 * 359.95425 * 10 9 7 28 28 H 1.08002 * 119.83737 * 179.97438 * 11 10 9 29 29 H 1.08000 * 119.78381 * 180.27677 * 12 11 10 30 30 H 0.97005 * 119.99795 * 145.55297 * 14 13 12 31 31 H 1.09003 * 109.46934 * 59.99991 * 17 15 14 32 32 H 1.09006 * 109.47238 * 300.00158 * 17 15 14 33 33 H 1.09005 * 110.96999 * 335.50118 * 20 18 17 34 34 H 1.09001 * 110.97103 * 211.74370 * 20 18 17 35 35 H 1.09000 * 110.48669 * 266.12390 * 21 20 18 36 36 H 1.08994 * 110.48887 * 143.47521 * 21 20 18 37 37 H 0.96997 * 124.34497 * 179.61540 * 24 22 21 38 38 H 1.07998 * 120.15834 * 180.23301 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6963 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2317 0.2706 9 6 1.3460 -2.4105 -0.3527 10 6 1.8183 -3.6477 0.1251 11 6 1.1686 -4.8103 -0.2224 12 6 0.0483 -4.7690 -1.0363 13 6 -0.4271 -3.5531 -1.5206 14 7 -1.5567 -3.5236 -2.3460 15 6 -1.7822 -4.5280 -3.2158 16 8 -0.9606 -5.4101 -3.3498 17 6 -3.0552 -4.5552 -4.0219 18 6 -3.0615 -5.7911 -4.9238 19 1 -2.9212 -6.6929 -4.3279 20 6 -4.3869 -5.8726 -5.7130 21 6 -4.0128 -5.1583 -7.0324 22 6 -2.5124 -5.3248 -7.1318 23 8 -1.8604 -5.1576 -8.1407 24 7 -2.0072 -5.6843 -5.9392 25 6 0.2120 -2.3743 -1.1826 26 1 -0.4850 0.8400 0.0004 27 1 2.6891 -3.6845 0.7629 28 1 1.5318 -5.7591 0.1441 29 1 -0.4574 -5.6861 -1.2999 30 1 -2.1774 -2.7801 -2.2922 31 1 -3.1157 -3.6566 -4.6359 32 1 -3.9112 -4.5931 -3.3481 33 1 -5.1836 -5.3401 -5.1935 34 1 -4.6683 -6.9095 -5.8969 35 1 -4.2769 -4.1020 -6.9825 36 1 -4.5066 -5.6365 -7.8783 37 1 -1.0665 -5.8512 -5.7713 38 1 -0.1582 -1.4304 -1.5546 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854883321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = -60.953411 kcal Electronic energy + Delta-G solvation = -22022.800647 eV Core-core repulsion = 18636.198595 eV Total energy + Delta-G solvation = -3386.602053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70848 -39.45071 -37.38001 -36.50334 -34.31919 -33.34598 -31.42552 -31.04294 -29.56800 -28.37855 -25.78277 -25.26452 -22.01302 -21.28241 -20.90487 -20.44468 -19.61426 -17.60049 -17.46227 -16.98541 -15.98157 -15.83081 -15.51830 -14.94757 -14.78036 -14.49331 -13.98130 -13.83958 -13.40248 -13.20955 -12.99552 -12.83844 -12.76941 -12.42872 -12.11682 -11.65763 -11.49955 -11.27589 -11.20327 -11.14689 -10.75942 -10.69555 -10.11618 -9.93258 -9.78107 -9.52155 -9.26520 -9.17853 -8.98070 -7.42725 -7.06962 -6.74123 -4.41421 2.48985 2.54620 2.82640 3.03540 3.07124 3.15428 3.28706 3.35683 3.53284 3.90287 4.19119 4.25139 4.44025 4.59953 4.77989 4.86352 5.10980 5.18716 5.34569 5.37853 5.55729 5.57897 5.63376 5.76069 6.22772 6.57327 6.63723 6.78178 6.84308 7.00556 7.01869 7.07021 7.20869 7.56133 7.63170 7.87700 7.98308 8.08860 8.22833 8.27801 8.50157 8.68315 8.84689 8.91119 10.14773 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.021319 B = 0.003624 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.057256 B = 7724.945220 C = 8310.406178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.121 3.879 10 C -0.228 4.228 11 C -0.086 4.086 12 C -0.227 4.227 13 C 0.143 3.857 14 N -0.663 5.663 15 C 0.506 3.494 16 O -0.529 6.529 17 C -0.157 4.157 18 C 0.147 3.853 19 H 0.098 0.902 20 C -0.128 4.128 21 C -0.158 4.158 22 C 0.514 3.486 23 O -0.542 6.542 24 N -0.715 5.715 25 C -0.182 4.182 26 H 0.279 0.721 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.402 0.598 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.419 0.581 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.312 -5.594 -6.636 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.118 3.882 10 C -0.248 4.248 11 C -0.105 4.105 12 C -0.248 4.248 13 C 0.052 3.948 14 N -0.306 5.306 15 C 0.293 3.707 16 O -0.406 6.406 17 C -0.198 4.198 18 C 0.040 3.960 19 H 0.116 0.884 20 C -0.166 4.166 21 C -0.198 4.198 22 C 0.300 3.700 23 O -0.419 6.419 24 N -0.370 5.370 25 C -0.203 4.203 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.237 0.763 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.259 0.741 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.737 -5.969 -7.281 15.046 hybrid contribution 0.398 1.240 0.355 1.350 sum -11.339 -4.729 -6.925 14.103 Atomic orbital electron populations 1.69799 1.07539 1.29124 1.36096 1.25867 0.94753 1.01220 0.92122 0.86373 0.80166 0.80198 0.80020 1.18860 1.20373 1.18988 1.19522 0.97812 0.91020 1.41026 0.90372 1.17361 0.90569 0.92151 0.88154 1.21052 1.03840 0.92917 1.06941 1.20420 0.95646 0.96597 0.97850 1.20259 1.02122 0.95451 1.06951 1.17605 0.88463 0.95066 0.93705 1.43512 1.25632 1.23845 1.37657 1.20495 0.88109 0.82267 0.79813 1.90684 1.46535 1.37345 1.66031 1.22229 0.97477 1.00759 0.99335 1.21360 0.87109 0.98119 0.89366 0.88355 1.22682 0.96585 1.02263 0.95092 1.22361 0.94115 1.03540 0.99810 1.20946 0.90727 0.75414 0.82953 1.90752 1.66723 1.51886 1.32589 1.46372 1.11428 1.69452 1.09773 1.21073 0.99952 0.95373 1.03948 0.90976 0.88853 0.89051 0.88156 0.76327 0.88565 0.87460 0.88818 0.89529 0.87828 0.88121 0.74079 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.78 10.94 55.55 0.61 -19.18 16 2 C 0.08 1.89 5.16 -17.35 -0.09 1.80 16 3 Si 0.91 18.36 29.59 -169.99 -5.03 13.32 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.14 9.06 -37.74 -0.34 -12.48 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.12 3.18 5.57 -106.85 -0.60 2.58 16 10 C -0.23 -5.61 9.79 -38.84 -0.38 -5.99 16 11 C -0.09 -1.99 10.02 -39.69 -0.40 -2.38 16 12 C -0.23 -5.23 8.66 -39.10 -0.34 -5.57 16 13 C 0.14 3.24 6.25 -83.77 -0.52 2.72 16 14 N -0.66 -11.60 5.33 -9.91 -0.05 -11.65 16 15 C 0.51 7.91 7.44 -10.99 -0.08 7.83 16 16 O -0.53 -10.04 12.70 5.55 0.07 -9.97 16 17 C -0.16 -1.51 5.31 -27.88 -0.15 -1.66 16 18 C 0.15 1.36 3.01 -67.01 -0.20 1.15 16 19 H 0.10 0.94 7.99 -51.93 -0.42 0.52 16 20 C -0.13 -0.76 6.70 -25.10 -0.17 -0.93 16 21 C -0.16 -1.24 6.86 -26.74 -0.18 -1.42 16 22 C 0.51 6.62 8.43 -10.86 -0.09 6.53 16 23 O -0.54 -9.49 18.03 5.56 0.10 -9.39 16 24 N -0.71 -8.75 5.46 -52.76 -0.29 -9.04 16 25 C -0.18 -4.56 8.60 -38.69 -0.33 -4.89 16 26 H 0.28 6.29 8.30 -40.82 -0.34 5.96 16 27 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 28 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.10 2.24 6.47 -52.49 -0.34 1.90 16 30 H 0.40 5.88 8.82 -40.82 -0.36 5.52 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.35 7.89 -51.93 -0.41 -0.06 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.42 5.93 8.19 -40.82 -0.33 5.59 16 38 H 0.12 3.09 6.17 -52.49 -0.32 2.76 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -32.22 322.77 -8.29 -40.51 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -4.69 Total: 13.23 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -3.87 Total: -12.69 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.27 Total: -39.87 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.17 Total: -19.37 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.22 -8.29 -40.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854883321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.444 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds