Wall clock time and date at job start Tue Mar 31 2020 06:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86801 * 120.00050 * 2 1 4 4 H 1.48493 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47393 * 300.00335 * 3 2 1 6 6 H 1.48508 * 109.47015 * 59.99700 * 3 2 1 7 7 C 1.38888 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00248 * 163.62214 * 7 2 1 9 9 N 1.37147 * 119.99703 * 343.62122 * 7 2 1 10 10 C 1.34772 * 119.99651 * 164.73769 * 9 7 2 11 11 O 1.21276 * 119.99852 * 174.95001 * 10 9 7 12 12 C 1.50698 * 120.00477 * 354.95782 * 10 9 7 13 13 C 1.52998 * 109.47457 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.43223 * 303.90693 * 13 12 10 15 15 C 1.54628 * 110.60073 * 181.29423 * 13 12 10 16 16 C 1.54482 * 101.76608 * 216.46710 * 15 13 12 17 17 N 1.46768 * 105.47090 * 25.41438 * 16 15 13 18 18 C 1.34423 * 111.29857 * 342.98509 * 17 16 15 19 19 O 1.21283 * 124.93801 * 180.67435 * 18 17 16 20 20 C 1.39786 * 119.99828 * 344.73803 * 9 7 2 21 21 C 1.38952 * 120.08033 * 281.20424 * 20 9 7 22 22 C 1.38088 * 119.92438 * 179.74939 * 21 20 9 23 23 C 1.38311 * 120.07389 * 0.55445 * 22 21 20 24 24 C 1.38312 * 120.15466 * 359.69789 * 23 22 21 25 25 C 1.38075 * 120.07732 * 0.02562 * 24 23 22 26 26 H 0.97000 * 119.99863 * 5.02351 * 1 2 3 27 27 H 1.09003 * 109.46932 * 59.99833 * 12 10 9 28 28 H 1.09007 * 109.46908 * 300.00099 * 12 10 9 29 29 H 1.09006 * 110.96804 * 334.58588 * 15 13 12 30 30 H 1.09003 * 110.97113 * 98.34714 * 15 13 12 31 31 H 1.08992 * 110.24452 * 144.41313 * 16 15 13 32 32 H 1.08997 * 110.24165 * 266.41781 * 16 15 13 33 33 H 0.96994 * 124.34846 * 162.98377 * 17 16 15 34 34 H 1.08002 * 120.03930 * 359.97438 * 21 20 9 35 35 H 1.07994 * 119.96369 * 180.29202 * 22 21 20 36 36 H 1.08003 * 119.92102 * 179.72559 * 23 22 21 37 37 H 1.08002 * 119.95650 * 180.02562 * 24 23 22 38 38 H 1.08006 * 120.04052 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8895 2.3965 -1.2124 6 1 1.8894 2.3965 1.2125 7 6 2.0087 -1.2028 -0.0005 8 1 3.0559 -1.2216 -0.2643 9 7 1.3647 -2.3665 0.3339 10 6 1.9287 -3.5559 0.0444 11 8 1.4049 -4.5829 0.4205 12 6 3.2103 -3.6096 -0.7466 13 6 3.6330 -5.0679 -0.9344 14 1 3.7258 -5.5646 0.0314 15 6 4.9644 -5.1521 -1.7163 16 6 4.7446 -6.4155 -2.5776 17 7 3.2898 -6.5401 -2.7258 18 6 2.6406 -5.7980 -1.8121 19 8 1.4346 -5.7282 -1.7039 20 6 0.1234 -2.3191 0.9750 21 6 0.0532 -2.0603 2.3384 22 6 -1.1750 -2.0090 2.9674 23 6 -2.3338 -2.2262 2.2442 24 6 -2.2673 -2.4892 0.8879 25 6 -1.0429 -2.5363 0.2514 26 1 -0.4850 0.8368 -0.0736 27 1 3.9914 -3.0715 -0.2097 28 1 3.0551 -3.1474 -1.7216 29 1 5.1047 -4.2718 -2.3437 30 1 5.8074 -5.2841 -1.0380 31 1 5.2141 -6.2930 -3.5535 32 1 5.1486 -7.2921 -2.0712 33 1 2.8530 -7.0875 -3.3969 34 1 0.9580 -1.8959 2.9048 35 1 -1.2306 -1.8033 4.0261 36 1 -3.2928 -2.1899 2.7395 37 1 -3.1741 -2.6578 0.3262 38 1 -0.9917 -2.7413 -0.8078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888563996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:07 Heat of formation + Delta-G solvation = -27.244287 kcal Electronic energy + Delta-G solvation = -23243.100745 eV Core-core repulsion = 19857.960429 eV Total energy + Delta-G solvation = -3385.140315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15289 -38.97771 -37.03876 -35.88573 -34.58785 -32.45630 -31.54323 -29.74238 -29.26537 -28.17461 -25.41313 -24.74359 -21.77903 -21.51415 -21.36470 -19.65422 -18.85488 -17.53629 -16.99428 -16.30012 -15.93748 -15.37253 -14.77428 -14.47845 -14.37264 -14.12414 -13.70545 -13.42597 -13.25092 -12.81872 -12.57188 -12.41114 -12.28644 -12.07520 -11.48605 -11.42090 -11.22687 -11.16828 -11.07547 -10.80377 -10.61938 -10.44248 -10.19477 -10.13271 -9.31185 -9.16458 -8.83778 -8.34369 -7.97523 -7.72726 -7.41723 -6.14196 -3.90947 2.60601 2.65920 3.11597 3.15513 3.21479 3.24151 3.62536 3.94097 4.09434 4.53518 4.60974 4.79661 4.98940 5.00490 5.18211 5.27676 5.45696 5.63208 5.76271 5.84148 5.90534 6.01255 6.04317 6.12288 6.26846 6.33244 6.50309 6.57945 6.70265 6.97315 7.14785 7.19168 7.31723 7.40526 7.47474 7.58973 7.77199 7.92303 8.10254 8.56706 8.76958 9.12068 9.51879 9.97707 10.71146 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.006321 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.292810 B = 4428.493047 C = 5674.151931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.041 3.959 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.349 4.349 8 H 0.101 0.899 9 N -0.425 5.425 10 C 0.469 3.531 11 O -0.567 6.567 12 C -0.102 4.102 13 C -0.106 4.106 14 H 0.109 0.891 15 C -0.132 4.132 16 C 0.106 3.894 17 N -0.749 5.749 18 C 0.517 3.483 19 O -0.488 6.488 20 C 0.246 3.754 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.123 4.123 25 C -0.063 4.063 26 H 0.270 0.730 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.403 0.597 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.465 -5.911 -2.911 10.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.166 4.166 3 Si 0.745 3.255 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.475 4.475 8 H 0.119 0.881 9 N -0.143 5.143 10 C 0.258 3.742 11 O -0.449 6.449 12 C -0.142 4.142 13 C -0.128 4.128 14 H 0.127 0.873 15 C -0.170 4.170 16 C -0.019 4.019 17 N -0.408 5.408 18 C 0.302 3.698 19 O -0.359 6.359 20 C 0.156 3.844 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.166 4.166 24 C -0.142 4.142 25 C -0.082 4.082 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.241 0.759 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.430 -6.141 -2.502 9.959 hybrid contribution 0.327 0.997 -0.493 1.159 sum 7.757 -5.144 -2.995 9.778 Atomic orbital electron populations 1.69949 1.05688 1.27511 1.45416 1.25250 0.95424 0.99560 0.96337 0.86017 0.79608 0.82005 0.77907 1.19350 1.20836 1.20606 1.19582 0.95181 0.83350 1.49403 0.88119 1.41306 1.16396 1.05469 1.51140 1.19989 0.87616 0.83044 0.83581 1.90630 1.65381 1.33085 1.55792 1.21263 0.97431 0.93716 1.01825 1.21725 0.93609 0.97578 0.99884 0.87269 1.22714 0.97563 0.97927 0.98816 1.21938 0.81374 0.98284 1.00329 1.46302 1.07589 1.50479 1.36388 1.20812 0.88926 0.79250 0.80783 1.90842 1.13593 1.62322 1.69112 1.17049 0.85345 0.92299 0.89751 1.20967 0.96905 1.02324 0.94315 1.20627 0.92635 1.02686 0.98414 1.20699 0.97044 1.04366 0.94526 1.20669 0.96645 1.02318 0.94530 1.20825 0.91686 0.97258 0.98481 0.91921 0.89157 0.89564 0.89802 0.89392 0.90880 0.91685 0.75926 0.87714 0.87825 0.87961 0.87795 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.67 10.34 55.49 0.57 -22.10 16 2 C 0.04 1.04 5.24 -17.49 -0.09 0.95 16 3 Si 0.92 19.53 29.59 -169.99 -5.03 14.50 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.35 -8.80 9.19 -14.93 -0.14 -8.93 16 8 H 0.10 2.32 6.46 -52.48 -0.34 1.98 16 9 N -0.42 -11.02 2.66 -58.98 -0.16 -11.18 16 10 C 0.47 11.52 7.03 -10.99 -0.08 11.45 16 11 O -0.57 -15.51 13.67 -17.48 -0.24 -15.75 16 12 C -0.10 -1.91 3.68 -27.88 -0.10 -2.02 16 13 C -0.11 -1.68 2.56 -90.64 -0.23 -1.91 16 14 H 0.11 1.79 8.02 -51.93 -0.42 1.37 16 15 C -0.13 -1.36 6.70 -25.10 -0.17 -1.53 16 16 C 0.11 0.97 7.78 -3.12 -0.02 0.95 16 17 N -0.75 -9.73 6.24 -59.20 -0.37 -10.10 16 18 C 0.52 9.48 7.70 -10.86 -0.08 9.39 16 19 O -0.49 -11.73 15.18 -17.49 -0.27 -12.00 16 20 C 0.25 6.46 2.29 -83.70 -0.19 6.27 16 21 C -0.13 -3.06 9.95 -39.37 -0.39 -3.45 16 22 C -0.12 -2.69 10.04 -39.61 -0.40 -3.09 16 23 C -0.15 -3.09 10.04 -39.53 -0.40 -3.49 16 24 C -0.12 -2.75 10.04 -39.61 -0.40 -3.15 16 25 C -0.06 -1.62 8.66 -39.37 -0.34 -1.96 16 26 H 0.27 6.92 8.32 -40.82 -0.34 6.58 16 27 H 0.09 1.50 7.53 -51.93 -0.39 1.11 16 28 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 29 H 0.08 0.82 7.92 -51.93 -0.41 0.41 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 4.54 8.96 -40.82 -0.37 4.18 16 34 H 0.10 2.47 8.06 -52.49 -0.42 2.05 16 35 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 38 H 0.10 2.78 8.06 -52.48 -0.42 2.35 16 LS Contribution 319.95 15.07 4.82 4.82 Total: -1.00 -34.03 319.95 -8.56 -42.59 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.86 Total: 9.73 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -3.03 Total: -0.52 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.05 Total: -43.37 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.50 Total: -27.74 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.03 -8.56 -42.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888563996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.345 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds