Wall clock time and date at job start Tue Mar 31 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31423 * 1 3 3 Si 1.86801 * 120.00050 * 2 1 4 4 H 1.48493 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47393 * 300.00335 * 3 2 1 6 6 H 1.48508 * 109.47015 * 59.99700 * 3 2 1 7 7 C 1.38888 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00248 * 163.62214 * 7 2 1 9 9 N 1.37147 * 119.99703 * 343.62122 * 7 2 1 10 10 C 1.34772 * 119.99651 * 164.73769 * 9 7 2 11 11 O 1.21276 * 119.99852 * 174.95001 * 10 9 7 12 12 C 1.50698 * 120.00477 * 354.95782 * 10 9 7 13 13 C 1.52998 * 109.47457 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.43223 * 303.90693 * 13 12 10 15 15 C 1.54628 * 110.60073 * 181.29423 * 13 12 10 16 16 C 1.54482 * 101.76608 * 216.46710 * 15 13 12 17 17 N 1.46768 * 105.47090 * 25.41438 * 16 15 13 18 18 C 1.34423 * 111.29857 * 342.98509 * 17 16 15 19 19 O 1.21283 * 124.93801 * 180.67435 * 18 17 16 20 20 C 1.39786 * 119.99828 * 344.73803 * 9 7 2 21 21 C 1.38952 * 120.08033 * 281.20424 * 20 9 7 22 22 C 1.38088 * 119.92438 * 179.74939 * 21 20 9 23 23 C 1.38311 * 120.07389 * 0.55445 * 22 21 20 24 24 C 1.38312 * 120.15466 * 359.69789 * 23 22 21 25 25 C 1.38075 * 120.07732 * 0.02562 * 24 23 22 26 26 H 0.97000 * 119.99863 * 5.02351 * 1 2 3 27 27 H 1.09003 * 109.46932 * 59.99833 * 12 10 9 28 28 H 1.09007 * 109.46908 * 300.00099 * 12 10 9 29 29 H 1.09006 * 110.96804 * 334.58588 * 15 13 12 30 30 H 1.09003 * 110.97113 * 98.34714 * 15 13 12 31 31 H 1.08992 * 110.24452 * 144.41313 * 16 15 13 32 32 H 1.08997 * 110.24165 * 266.41781 * 16 15 13 33 33 H 0.96994 * 124.34846 * 162.98377 * 17 16 15 34 34 H 1.08002 * 120.03930 * 359.97438 * 21 20 9 35 35 H 1.07994 * 119.96369 * 180.29202 * 22 21 20 36 36 H 1.08003 * 119.92102 * 179.72559 * 23 22 21 37 37 H 1.08002 * 119.95650 * 180.02562 * 24 23 22 38 38 H 1.08006 * 120.04052 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8895 2.3965 -1.2124 6 1 1.8894 2.3965 1.2125 7 6 2.0087 -1.2028 -0.0005 8 1 3.0559 -1.2216 -0.2643 9 7 1.3647 -2.3665 0.3339 10 6 1.9287 -3.5559 0.0444 11 8 1.4049 -4.5829 0.4205 12 6 3.2103 -3.6096 -0.7466 13 6 3.6330 -5.0679 -0.9344 14 1 3.7258 -5.5646 0.0314 15 6 4.9644 -5.1521 -1.7163 16 6 4.7446 -6.4155 -2.5776 17 7 3.2898 -6.5401 -2.7258 18 6 2.6406 -5.7980 -1.8121 19 8 1.4346 -5.7282 -1.7039 20 6 0.1234 -2.3191 0.9750 21 6 0.0532 -2.0603 2.3384 22 6 -1.1750 -2.0090 2.9674 23 6 -2.3338 -2.2262 2.2442 24 6 -2.2673 -2.4892 0.8879 25 6 -1.0429 -2.5363 0.2514 26 1 -0.4850 0.8368 -0.0736 27 1 3.9914 -3.0715 -0.2097 28 1 3.0551 -3.1474 -1.7216 29 1 5.1047 -4.2718 -2.3437 30 1 5.8074 -5.2841 -1.0380 31 1 5.2141 -6.2930 -3.5535 32 1 5.1486 -7.2921 -2.0712 33 1 2.8530 -7.0875 -3.3969 34 1 0.9580 -1.8959 2.9048 35 1 -1.2306 -1.8033 4.0261 36 1 -3.2928 -2.1899 2.7395 37 1 -3.1741 -2.6578 0.3262 38 1 -0.9917 -2.7413 -0.8078 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888563996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:06 Heat of formation + Delta-G solvation = -49.649830 kcal Electronic energy + Delta-G solvation = -23244.072322 eV Core-core repulsion = 19857.960429 eV Total energy + Delta-G solvation = -3386.111893 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55848 -40.68024 -38.83156 -37.23462 -36.47482 -33.79414 -33.47479 -31.55500 -30.84325 -29.47206 -26.95272 -26.48802 -23.31971 -23.17794 -22.64969 -21.22449 -20.52268 -19.29153 -18.26714 -17.70463 -17.49545 -17.18968 -16.51908 -16.17174 -16.02957 -15.63472 -15.14581 -15.01272 -14.58925 -14.41671 -14.15132 -14.07064 -13.64879 -13.31513 -13.24899 -13.10503 -12.86592 -12.67530 -12.61031 -12.19656 -12.13971 -12.00069 -11.92617 -11.77761 -11.19161 -10.66152 -10.20960 -9.92471 -9.88839 -9.55900 -9.27104 -8.03282 -5.87254 0.78862 0.84805 1.42632 1.48209 1.60228 1.76372 2.09586 2.32170 2.57281 2.95692 3.13596 3.30121 3.58519 3.67464 3.99243 4.22886 4.23085 4.27750 4.38646 4.40971 4.56962 4.66344 4.74876 4.81130 4.85600 4.90102 4.98591 5.15688 5.18172 5.31542 5.37045 5.49049 5.68356 5.78671 5.91498 6.06291 6.07317 6.16649 6.28713 6.66407 7.19392 7.48463 7.63560 8.09309 8.81407 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.006321 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.292810 B = 4428.493047 C = 5674.151931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C -0.006 4.006 3 Si 0.989 3.011 4 H -0.249 1.249 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.364 4.364 8 H 0.120 0.880 9 N -0.439 5.439 10 C 0.451 3.549 11 O -0.604 6.604 12 C -0.093 4.093 13 C -0.107 4.107 14 H 0.100 0.900 15 C -0.118 4.118 16 C 0.102 3.898 17 N -0.734 5.734 18 C 0.501 3.499 19 O -0.564 6.564 20 C 0.221 3.779 21 C -0.151 4.151 22 C -0.120 4.120 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.096 4.096 26 H 0.265 0.735 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.411 0.589 34 H 0.102 0.898 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.129 0.871 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.700 -5.524 -2.694 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.172 1.172 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.490 4.490 8 H 0.137 0.863 9 N -0.158 5.158 10 C 0.242 3.758 11 O -0.488 6.488 12 C -0.133 4.133 13 C -0.129 4.129 14 H 0.118 0.882 15 C -0.156 4.156 16 C -0.021 4.021 17 N -0.390 5.390 18 C 0.287 3.713 19 O -0.441 6.441 20 C 0.131 3.869 21 C -0.170 4.170 22 C -0.138 4.138 23 C -0.161 4.161 24 C -0.143 4.143 25 C -0.116 4.116 26 H 0.076 0.924 27 H 0.133 0.867 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.140 0.860 31 H 0.127 0.873 32 H 0.107 0.893 33 H 0.249 0.751 34 H 0.120 0.880 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.147 0.853 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.746 -5.785 -2.321 11.569 hybrid contribution -0.412 0.790 -0.571 1.058 sum 9.335 -4.995 -2.892 10.975 Atomic orbital electron populations 1.70146 1.07263 1.27809 1.46471 1.26165 0.96199 1.02766 0.95839 0.84938 0.79356 0.77277 0.77182 1.17167 1.20963 1.21253 1.20074 0.96082 0.83423 1.49372 0.86282 1.41661 1.16582 1.06213 1.51301 1.21062 0.89202 0.82201 0.83340 1.90583 1.66865 1.34184 1.57195 1.21261 0.95046 0.96374 1.00592 1.21750 0.96129 0.95003 1.00012 0.88185 1.22795 0.94981 0.98993 0.98801 1.22331 0.78623 0.98739 1.02429 1.46321 1.09451 1.48562 1.34700 1.21387 0.88407 0.79737 0.81734 1.90799 1.16728 1.65074 1.71471 1.17381 0.85718 0.93075 0.90774 1.21149 0.98280 1.03741 0.93866 1.21101 0.91694 1.00694 1.00310 1.21169 0.98842 1.02417 0.93690 1.21030 0.96280 1.01201 0.95828 1.20782 0.93510 1.00093 0.97193 0.92439 0.86663 0.89955 0.88740 0.86037 0.87341 0.89261 0.75056 0.87970 0.83990 0.83441 0.85289 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.36 10.34 21.65 0.22 -48.14 16 2 C -0.01 -0.32 5.24 84.91 0.44 0.12 16 3 Si 0.99 40.01 29.59 68.60 2.03 42.03 16 4 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.36 -18.68 9.19 84.02 0.77 -17.91 16 8 H 0.12 5.44 6.46 -2.91 -0.02 5.42 16 9 N -0.44 -23.81 2.66 -458.91 -1.22 -25.03 16 10 C 0.45 23.26 7.03 87.66 0.62 23.88 16 11 O -0.60 -35.14 13.67 19.02 0.26 -34.88 16 12 C -0.09 -3.51 3.68 29.85 0.11 -3.40 16 13 C -0.11 -3.34 2.56 -10.80 -0.03 -3.36 16 14 H 0.10 3.29 8.02 -2.39 -0.02 3.27 16 15 C -0.12 -2.00 6.70 31.65 0.21 -1.79 16 16 C 0.10 1.47 7.78 86.83 0.68 2.14 16 17 N -0.73 -18.14 6.24 -459.81 -2.87 -21.01 16 18 C 0.50 18.80 7.70 87.89 0.68 19.48 16 19 O -0.56 -28.98 15.18 18.99 0.29 -28.69 16 20 C 0.22 12.13 2.29 38.22 0.09 12.22 16 21 C -0.15 -7.51 9.95 22.41 0.22 -7.28 16 22 C -0.12 -5.02 10.04 22.25 0.22 -4.80 16 23 C -0.14 -5.74 10.04 22.30 0.22 -5.52 16 24 C -0.12 -5.66 10.04 22.25 0.22 -5.44 16 25 C -0.10 -5.23 8.66 22.40 0.19 -5.03 16 26 H 0.27 14.01 8.32 -92.71 -0.77 13.24 16 27 H 0.12 3.70 7.53 -2.39 -0.02 3.68 16 28 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 29 H 0.09 1.45 7.92 -2.38 -0.02 1.44 16 30 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.41 8.88 8.96 -92.71 -0.83 8.05 16 34 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 36 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 38 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -81.54 319.95 3.62 -77.93 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.25 Total: 34.48 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 4.66 Total: 3.31 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -3.86 Total: -94.18 kcal Atomic # 8 Polarization: -64.12 SS G_CDS: 0.55 Total: -63.57 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Total: -81.54 3.62 -77.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888563996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.277 kcal (2) G-P(sol) polarization free energy of solvation -81.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds