Wall clock time and date at job start Tue Mar 31 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31357 * 1 3 3 Si 1.86791 * 120.00501 * 2 1 4 4 H 1.48491 * 109.47319 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.47067 * 29.99902 * 3 2 1 6 6 H 1.48498 * 109.47655 * 149.99758 * 3 2 1 7 7 C 1.39006 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00190 * 198.10498 * 7 2 1 9 9 N 1.36961 * 119.99957 * 18.11519 * 7 2 1 10 10 C 1.34775 * 119.99809 * 42.89030 * 9 7 2 11 11 O 1.21636 * 120.00409 * 3.75188 * 10 9 7 12 12 C 1.46908 * 119.99683 * 183.75035 * 10 9 7 13 13 C 1.33147 * 119.99847 * 185.92294 * 12 10 9 14 14 C 1.50705 * 119.99849 * 185.46453 * 13 12 10 15 15 H 1.08995 * 110.45701 * 2.36543 * 14 13 12 16 16 C 1.54511 * 110.51047 * 124.96913 * 14 13 12 17 17 C 1.54482 * 104.05734 * 118.64637 * 16 14 13 18 18 O 1.44417 * 104.80795 * 23.97713 * 17 16 14 19 19 C 1.44426 * 105.27643 * 319.48715 * 18 17 16 20 20 C 1.39326 * 119.99667 * 222.89192 * 9 7 2 21 21 C 1.39083 * 119.70072 * 227.15329 * 20 9 7 22 22 C 1.38372 * 119.10175 * 180.02562 * 21 20 9 23 23 C 1.38835 * 118.49256 * 0.02562 * 22 21 20 24 24 C 1.38152 * 119.31209 * 359.97146 * 23 22 21 25 25 N 1.31871 * 120.85727 * 0.02875 * 24 23 22 26 26 H 0.97001 * 119.99609 * 4.90793 * 1 2 3 27 27 H 1.08001 * 119.99747 * 5.92039 * 12 10 9 28 28 H 1.07996 * 120.00433 * 5.45808 * 13 12 10 29 29 H 1.09005 * 110.51223 * 237.28534 * 16 14 13 30 30 H 1.08998 * 110.51254 * 0.02562 * 16 14 13 31 31 H 1.09007 * 110.37401 * 142.81283 * 17 16 14 32 32 H 1.09001 * 110.37387 * 265.03416 * 17 16 14 33 33 H 1.09000 * 110.37307 * 281.68042 * 19 18 17 34 34 H 1.08996 * 110.37193 * 159.34178 * 19 18 17 35 35 H 1.08004 * 120.45112 * 359.97438 * 21 20 9 36 36 H 1.08003 * 120.75455 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.34450 * 180.02562 * 23 22 21 38 38 H 1.07997 * 119.56579 * 180.30336 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6176 0.0000 4 1 2.4952 2.0463 -1.4000 5 1 1.4452 2.6526 0.7000 6 1 3.5452 1.4400 0.7001 7 6 2.0085 -1.2039 0.0005 8 1 3.0484 -1.2270 0.2912 9 7 1.3745 -2.3607 -0.3677 10 6 0.5543 -2.3685 -1.4372 11 8 0.4299 -1.3667 -2.1156 12 6 -0.1894 -3.5872 -1.7834 13 6 -0.9070 -3.6334 -2.9041 14 6 -1.7673 -4.8350 -3.1989 15 1 -1.7185 -5.5494 -2.3771 16 6 -3.2288 -4.4045 -3.4559 17 6 -3.5047 -4.8599 -4.9061 18 8 -2.5654 -5.9313 -5.1415 19 6 -1.3331 -5.4995 -4.5242 20 6 1.5775 -3.5293 0.3632 21 6 1.8536 -4.7191 -0.3021 22 6 2.0526 -5.8724 0.4360 23 6 1.9678 -5.7961 1.8197 24 6 1.6900 -4.5804 2.4142 25 7 1.5049 -3.4974 1.6849 26 1 -0.4850 0.8370 -0.0719 27 1 -0.1541 -4.4456 -1.1290 28 1 -0.8725 -2.8097 -3.6017 29 1 -3.9028 -4.9080 -2.7628 30 1 -3.3290 -3.3225 -3.3702 31 1 -4.5276 -5.2243 -5.0014 32 1 -3.3288 -4.0392 -5.6015 33 1 -0.8223 -4.7775 -5.1612 34 1 -0.6878 -6.3553 -4.3260 35 1 1.9111 -4.7427 -1.3804 36 1 2.2682 -6.8109 -0.0531 37 1 2.1182 -6.6777 2.4250 38 1 1.6279 -4.5153 3.4905 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892477625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:16 Heat of formation + Delta-G solvation = -5.109653 kcal Electronic energy + Delta-G solvation = -22607.003921 eV Core-core repulsion = 19222.823436 eV Total energy + Delta-G solvation = -3384.180486 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00353 -39.38899 -38.08419 -34.77538 -33.95810 -32.22561 -31.83649 -30.52720 -29.16660 -28.72685 -25.46928 -23.51918 -22.86351 -22.57352 -21.85694 -20.18704 -18.96834 -17.61332 -17.03365 -16.23121 -15.87679 -15.73529 -15.43331 -15.16936 -14.64381 -14.32896 -14.16609 -13.52823 -13.43803 -13.05746 -12.82030 -12.76484 -12.57373 -11.83551 -11.77946 -11.59641 -11.50683 -11.27569 -11.14992 -10.94550 -10.83488 -10.60246 -10.33846 -9.86266 -9.43703 -9.24288 -8.80833 -8.70632 -8.57917 -8.53521 -7.24883 -6.29986 -4.05481 1.63941 1.83894 2.15506 3.27442 3.32895 3.33894 3.92320 4.04450 4.29263 4.46482 4.63017 4.68947 4.76112 4.95608 5.06281 5.20126 5.25499 5.28255 5.34914 5.40006 5.56594 5.60773 5.65506 5.69418 5.72081 5.79123 5.86941 5.98016 6.06180 6.18672 6.26763 6.57686 6.68725 6.72048 6.87932 6.89556 7.22594 7.49453 8.05686 8.49203 8.86076 8.96699 9.39258 9.88636 10.77369 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.005834 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.434767 B = 4798.414772 C = 6532.567663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.073 3.927 3 Si 0.921 3.079 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.335 4.335 8 H 0.088 0.912 9 N -0.383 5.383 10 C 0.521 3.479 11 O -0.509 6.509 12 C -0.179 4.179 13 C -0.106 4.106 14 C -0.091 4.091 15 H 0.087 0.913 16 C -0.148 4.148 17 C 0.045 3.955 18 O -0.380 6.380 19 C 0.052 3.948 20 C 0.365 3.635 21 C -0.215 4.215 22 C -0.059 4.059 23 C -0.231 4.231 24 C 0.123 3.877 25 N -0.488 5.488 26 H 0.269 0.731 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 -11.974 -3.483 12.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.140 4.140 3 Si 0.747 3.253 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.105 0.895 9 N -0.096 5.096 10 C 0.312 3.688 11 O -0.385 6.385 12 C -0.200 4.200 13 C -0.126 4.126 14 C -0.110 4.110 15 H 0.105 0.895 16 C -0.185 4.185 17 C -0.032 4.032 18 O -0.299 6.299 19 C -0.024 4.024 20 C 0.136 3.864 21 C -0.239 4.239 22 C -0.085 4.085 23 C -0.253 4.253 24 C -0.037 4.037 25 N -0.202 5.202 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.979 -10.588 -3.571 11.564 hybrid contribution 0.542 0.163 0.070 0.570 sum -2.437 -10.425 -3.501 11.264 Atomic orbital electron populations 1.69861 1.06678 1.28456 1.40623 1.25325 0.94953 0.99959 0.93725 0.86050 0.79411 0.81368 0.78467 1.20014 1.20952 1.19450 1.19181 0.94126 0.83013 1.49817 0.89455 1.41093 1.40407 1.06886 1.21210 1.18101 0.82234 0.87880 0.80596 1.90624 1.63360 1.34755 1.49808 1.23180 0.99695 0.98552 0.98597 1.23275 0.94426 0.97243 0.97642 1.21665 0.94284 0.96085 0.98972 0.89451 1.22986 0.95603 1.02862 0.97081 1.23438 0.94058 0.90289 0.95419 1.89087 1.21917 1.40986 1.77861 1.23502 0.87475 0.99332 0.92119 1.19107 0.92214 0.86968 0.88076 1.21844 1.07660 0.93452 1.00950 1.21236 0.95818 0.97546 0.93907 1.21806 1.08914 0.99242 0.95368 1.22528 0.93973 0.87731 0.99506 1.67485 1.14817 1.31101 1.06831 0.92036 0.86365 0.85812 0.90468 0.89726 0.89245 0.92157 0.91684 0.88892 0.85331 0.85693 0.85932 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.45 11.72 55.50 0.65 -23.80 16 2 C 0.07 2.05 4.39 -17.47 -0.08 1.98 16 3 Si 0.92 21.85 29.59 -169.99 -5.03 16.81 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.34 -9.47 8.96 -14.98 -0.13 -9.60 16 8 H 0.09 2.42 7.90 -52.49 -0.41 2.01 16 9 N -0.38 -10.02 2.69 -62.02 -0.17 -10.18 16 10 C 0.52 13.27 6.60 -12.75 -0.08 13.18 16 11 O -0.51 -14.60 14.09 5.25 0.07 -14.52 16 12 C -0.18 -3.55 7.62 -37.85 -0.29 -3.84 16 13 C -0.11 -1.78 8.08 -36.08 -0.29 -2.08 16 14 C -0.09 -1.21 3.45 -90.20 -0.31 -1.52 16 15 H 0.09 1.11 7.88 -51.93 -0.41 0.71 16 16 C -0.15 -1.77 6.73 -25.16 -0.17 -1.94 16 17 C 0.04 0.49 7.63 37.93 0.29 0.78 16 18 O -0.38 -4.97 11.65 -35.23 -0.41 -5.38 16 19 C 0.05 0.64 7.17 37.93 0.27 0.91 16 20 C 0.37 8.28 6.03 -154.71 -0.93 7.34 16 21 C -0.22 -3.89 7.36 -39.22 -0.29 -4.18 16 22 C -0.06 -0.87 10.17 -39.31 -0.40 -1.27 16 23 C -0.23 -3.34 10.11 -39.39 -0.40 -3.74 16 24 C 0.12 2.12 11.18 -17.57 -0.20 1.93 16 25 N -0.49 -10.99 10.09 -12.36 -0.12 -11.11 16 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.12 2.16 5.57 -52.49 -0.29 1.87 16 28 H 0.12 2.24 7.53 -52.49 -0.40 1.85 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.07 7.73 -51.93 -0.40 0.67 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.78 7.86 -51.93 -0.41 0.37 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.13 2.17 6.95 -52.48 -0.36 1.81 16 36 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -33.90 323.10 -7.93 -41.83 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.78 Total: 3.53 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.01 Total: -2.04 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.36 Total: -45.10 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.34 Total: -19.91 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.90 -7.93 -41.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892477625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.724 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds