Wall clock time and date at job start Tue Mar 31 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31357 * 1 3 3 Si 1.86791 * 120.00501 * 2 1 4 4 H 1.48491 * 109.47319 * 270.00038 * 3 2 1 5 5 H 1.48503 * 109.47067 * 29.99902 * 3 2 1 6 6 H 1.48498 * 109.47655 * 149.99758 * 3 2 1 7 7 C 1.39006 * 119.99610 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00190 * 198.10498 * 7 2 1 9 9 N 1.36961 * 119.99957 * 18.11519 * 7 2 1 10 10 C 1.34775 * 119.99809 * 42.89030 * 9 7 2 11 11 O 1.21636 * 120.00409 * 3.75188 * 10 9 7 12 12 C 1.46908 * 119.99683 * 183.75035 * 10 9 7 13 13 C 1.33147 * 119.99847 * 185.92294 * 12 10 9 14 14 C 1.50705 * 119.99849 * 185.46453 * 13 12 10 15 15 H 1.08995 * 110.45701 * 2.36543 * 14 13 12 16 16 C 1.54511 * 110.51047 * 124.96913 * 14 13 12 17 17 C 1.54482 * 104.05734 * 118.64637 * 16 14 13 18 18 O 1.44417 * 104.80795 * 23.97713 * 17 16 14 19 19 C 1.44426 * 105.27643 * 319.48715 * 18 17 16 20 20 C 1.39326 * 119.99667 * 222.89192 * 9 7 2 21 21 C 1.39083 * 119.70072 * 227.15329 * 20 9 7 22 22 C 1.38372 * 119.10175 * 180.02562 * 21 20 9 23 23 C 1.38835 * 118.49256 * 0.02562 * 22 21 20 24 24 C 1.38152 * 119.31209 * 359.97146 * 23 22 21 25 25 N 1.31871 * 120.85727 * 0.02875 * 24 23 22 26 26 H 0.97001 * 119.99609 * 4.90793 * 1 2 3 27 27 H 1.08001 * 119.99747 * 5.92039 * 12 10 9 28 28 H 1.07996 * 120.00433 * 5.45808 * 13 12 10 29 29 H 1.09005 * 110.51223 * 237.28534 * 16 14 13 30 30 H 1.08998 * 110.51254 * 0.02562 * 16 14 13 31 31 H 1.09007 * 110.37401 * 142.81283 * 17 16 14 32 32 H 1.09001 * 110.37387 * 265.03416 * 17 16 14 33 33 H 1.09000 * 110.37307 * 281.68042 * 19 18 17 34 34 H 1.08996 * 110.37193 * 159.34178 * 19 18 17 35 35 H 1.08004 * 120.45112 * 359.97438 * 21 20 9 36 36 H 1.08003 * 120.75455 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.34450 * 180.02562 * 23 22 21 38 38 H 1.07997 * 119.56579 * 180.30336 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6176 0.0000 4 1 2.4952 2.0463 -1.4000 5 1 1.4452 2.6526 0.7000 6 1 3.5452 1.4400 0.7001 7 6 2.0085 -1.2039 0.0005 8 1 3.0484 -1.2270 0.2912 9 7 1.3745 -2.3607 -0.3677 10 6 0.5543 -2.3685 -1.4372 11 8 0.4299 -1.3667 -2.1156 12 6 -0.1894 -3.5872 -1.7834 13 6 -0.9070 -3.6334 -2.9041 14 6 -1.7673 -4.8350 -3.1989 15 1 -1.7185 -5.5494 -2.3771 16 6 -3.2288 -4.4045 -3.4559 17 6 -3.5047 -4.8599 -4.9061 18 8 -2.5654 -5.9313 -5.1415 19 6 -1.3331 -5.4995 -4.5242 20 6 1.5775 -3.5293 0.3632 21 6 1.8536 -4.7191 -0.3021 22 6 2.0526 -5.8724 0.4360 23 6 1.9678 -5.7961 1.8197 24 6 1.6900 -4.5804 2.4142 25 7 1.5049 -3.4974 1.6849 26 1 -0.4850 0.8370 -0.0719 27 1 -0.1541 -4.4456 -1.1290 28 1 -0.8725 -2.8097 -3.6017 29 1 -3.9028 -4.9080 -2.7628 30 1 -3.3290 -3.3225 -3.3702 31 1 -4.5276 -5.2243 -5.0014 32 1 -3.3288 -4.0392 -5.6015 33 1 -0.8223 -4.7775 -5.1612 34 1 -0.6878 -6.3553 -4.3260 35 1 1.9111 -4.7427 -1.3804 36 1 2.2682 -6.8109 -0.0531 37 1 2.1182 -6.6777 2.4250 38 1 1.6279 -4.5153 3.4905 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892477625.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:15 Heat of formation + Delta-G solvation = -27.816793 kcal Electronic energy + Delta-G solvation = -22607.988577 eV Core-core repulsion = 19222.823436 eV Total energy + Delta-G solvation = -3385.165141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.57893 -40.41895 -39.73851 -36.45998 -35.41811 -34.10998 -33.24831 -31.74517 -30.69426 -29.82506 -27.31729 -25.03486 -24.05910 -23.84369 -23.19500 -21.54863 -20.47088 -19.38310 -18.61673 -17.44399 -17.27093 -17.04498 -16.63956 -16.45569 -16.23691 -15.96017 -15.59992 -15.21715 -14.75900 -14.66385 -14.37221 -13.87994 -13.78342 -13.50449 -13.07876 -13.04641 -12.87684 -12.80928 -12.60272 -12.48299 -12.23331 -12.16368 -11.65581 -11.21244 -10.80527 -10.71126 -10.54896 -10.37578 -10.21165 -10.08443 -9.02519 -8.35299 -6.16936 0.21582 0.48081 0.71015 1.33233 1.40682 1.46710 2.21082 2.58271 2.79104 2.96602 3.02072 3.30855 3.58913 3.68286 3.90529 3.96385 4.05387 4.12718 4.17836 4.25321 4.33190 4.37097 4.40687 4.49019 4.73319 4.75112 4.85104 4.86705 4.95263 5.03391 5.05311 5.28783 5.31490 5.39249 5.45161 5.47794 5.80060 5.89996 6.09135 6.70229 6.93586 7.20414 7.61935 8.01262 8.72182 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.005834 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.434767 B = 4798.414772 C = 6532.567663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.023 3.977 3 Si 0.981 3.019 4 H -0.279 1.279 5 H -0.276 1.276 6 H -0.256 1.256 7 C -0.356 4.356 8 H 0.076 0.924 9 N -0.406 5.406 10 C 0.508 3.492 11 O -0.567 6.567 12 C -0.202 4.202 13 C -0.067 4.067 14 C -0.089 4.089 15 H 0.101 0.899 16 C -0.148 4.148 17 C 0.044 3.956 18 O -0.391 6.391 19 C 0.055 3.945 20 C 0.327 3.673 21 C -0.209 4.209 22 C -0.047 4.047 23 C -0.196 4.196 24 C 0.103 3.897 25 N -0.540 5.540 26 H 0.264 0.736 27 H 0.136 0.864 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.177 0.823 37 H 0.174 0.826 38 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.323 -15.892 -3.172 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.205 1.205 5 H -0.201 1.201 6 H -0.180 1.180 7 C -0.483 4.483 8 H 0.094 0.906 9 N -0.121 5.121 10 C 0.301 3.699 11 O -0.447 6.447 12 C -0.223 4.223 13 C -0.087 4.087 14 C -0.108 4.108 15 H 0.119 0.881 16 C -0.186 4.186 17 C -0.032 4.032 18 O -0.310 6.310 19 C -0.021 4.021 20 C 0.100 3.900 21 C -0.233 4.233 22 C -0.073 4.073 23 C -0.217 4.217 24 C -0.055 4.055 25 N -0.255 5.255 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.131 0.869 35 H 0.154 0.846 36 H 0.194 0.806 37 H 0.192 0.808 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.782 -14.574 -3.202 15.179 hybrid contribution 0.516 1.051 0.040 1.172 sum -2.266 -13.523 -3.163 14.071 Atomic orbital electron populations 1.69967 1.08124 1.28617 1.43522 1.26184 0.95670 1.03125 0.93440 0.85148 0.78776 0.77514 0.78147 1.20519 1.20147 1.17954 1.19231 0.94114 0.84921 1.50011 0.90634 1.41182 1.41118 1.07550 1.22226 1.18904 0.81859 0.89010 0.80093 1.90558 1.65346 1.36990 1.51826 1.22901 1.01643 0.97262 1.00522 1.23493 0.92094 0.97670 0.95450 1.21727 0.94188 0.94513 1.00347 0.88064 1.23013 0.94882 1.02316 0.98397 1.23567 0.94925 0.90172 0.94542 1.89083 1.22327 1.41646 1.77938 1.23525 0.87600 0.99986 0.91021 1.19288 0.94738 0.87432 0.88505 1.21999 1.06618 0.93017 1.01621 1.21831 0.93449 0.97998 0.94027 1.22387 1.04008 0.99511 0.95803 1.23136 0.93974 0.87770 1.00658 1.67320 1.16401 1.34269 1.07492 0.92622 0.84613 0.87630 0.88958 0.90978 0.86974 0.91842 0.91944 0.86851 0.84630 0.80560 0.80826 0.81079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -54.87 11.72 21.67 0.25 -54.62 16 2 C 0.02 1.36 4.39 84.95 0.37 1.73 16 3 Si 0.98 47.28 29.59 68.60 2.03 49.31 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.36 -21.35 8.96 84.08 0.75 -20.59 16 8 H 0.08 4.48 7.90 -2.91 -0.02 4.46 16 9 N -0.41 -22.39 2.69 -468.38 -1.26 -23.65 16 10 C 0.51 27.38 6.60 86.51 0.57 27.95 16 11 O -0.57 -34.83 14.09 -4.14 -0.06 -34.89 16 12 C -0.20 -8.19 7.62 23.40 0.18 -8.01 16 13 C -0.07 -2.26 8.08 24.54 0.20 -2.06 16 14 C -0.09 -2.18 3.45 -10.52 -0.04 -2.22 16 15 H 0.10 2.26 7.88 -2.39 -0.02 2.24 16 16 C -0.15 -3.29 6.73 31.61 0.21 -3.08 16 17 C 0.04 0.87 7.63 72.49 0.55 1.43 16 18 O -0.39 -9.16 11.65 -148.98 -1.74 -10.89 16 19 C 0.06 1.20 7.17 72.49 0.52 1.72 16 20 C 0.33 15.06 6.03 132.94 0.80 15.86 16 21 C -0.21 -7.19 7.36 22.50 0.17 -7.03 16 22 C -0.05 -1.15 10.17 22.44 0.23 -0.92 16 23 C -0.20 -4.62 10.11 22.39 0.23 -4.39 16 24 C 0.10 3.31 11.18 84.67 0.95 4.26 16 25 N -0.54 -24.50 10.09 -193.01 -1.95 -26.45 16 26 H 0.26 15.94 8.31 -92.71 -0.77 15.16 16 27 H 0.14 4.88 5.57 -2.91 -0.02 4.87 16 28 H 0.11 4.00 7.53 -2.91 -0.02 3.97 16 29 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.07 1.79 7.73 -2.39 -0.02 1.77 16 31 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.39 7.86 -2.39 -0.02 1.37 16 34 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.14 4.40 6.95 -2.91 -0.02 4.38 16 36 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.17 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -82.07 323.10 4.04 -78.04 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 1.06 Total: 18.50 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 5.69 Total: 4.65 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -2.96 Total: -104.72 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -1.79 Total: -45.78 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -82.07 4.04 -78.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892477625.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.222 kcal (2) G-P(sol) polarization free energy of solvation -82.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds