Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86798 * 120.00054 * 2 1 4 4 H 1.48494 * 109.47192 * 90.00432 * 3 2 1 5 5 H 1.48501 * 109.47101 * 210.00427 * 3 2 1 6 6 H 1.48496 * 109.47196 * 330.00249 * 3 2 1 7 7 C 1.39031 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 170.16430 * 7 2 1 9 9 N 1.36902 * 119.99563 * 350.15668 * 7 2 1 10 10 C 1.34779 * 119.99580 * 151.88090 * 9 7 2 11 11 O 1.21624 * 119.99998 * 355.63706 * 10 9 7 12 12 C 1.47423 * 119.99891 * 175.62971 * 10 9 7 13 13 C 1.40042 * 120.60427 * 45.68888 * 12 10 9 14 14 C 1.38324 * 118.34537 * 179.77969 * 13 12 10 15 15 C 1.38366 * 119.45953 * 0.52122 * 14 13 12 16 16 C 1.50700 * 119.39712 * 179.69897 * 15 14 13 17 17 C 1.53002 * 117.49984 * 343.76661 * 16 15 14 18 18 C 1.52996 * 117.50058 * 275.10395 * 16 15 14 19 19 N 1.31892 * 121.20327 * 359.71627 * 15 14 13 20 20 C 1.32219 * 121.80644 * 0.02562 * 19 15 14 21 21 O 1.35431 * 119.80742 * 179.97438 * 20 19 15 22 22 C 1.46501 * 120.00459 * 331.88705 * 9 7 2 23 23 C 1.52999 * 117.49646 * 312.99654 * 22 9 7 24 24 C 1.52998 * 117.49687 * 244.37441 * 22 9 7 25 25 H 0.96996 * 119.99919 * 355.03171 * 1 2 3 26 26 H 1.08002 * 120.82369 * 0.02562 * 13 12 10 27 27 H 1.07991 * 120.26673 * 180.23905 * 14 13 12 28 28 H 1.09010 * 115.54912 * 129.43645 * 16 15 14 29 29 H 1.08994 * 117.50003 * 359.97438 * 17 16 15 30 30 H 1.09005 * 117.49853 * 145.02224 * 17 16 15 31 31 H 1.08999 * 117.50205 * 214.98184 * 18 16 15 32 32 H 1.09005 * 117.49976 * 359.97438 * 18 16 15 33 33 H 0.96702 * 114.00130 * 270.02192 * 21 20 19 34 34 H 1.09000 * 115.55127 * 98.70547 * 22 9 7 35 35 H 1.08996 * 117.50044 * 359.97438 * 23 22 9 36 36 H 1.08997 * 117.50102 * 145.02554 * 23 22 9 37 37 H 1.09003 * 117.49806 * 214.98265 * 24 22 9 38 38 H 1.08999 * 117.50342 * 359.97106 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4954 2.0463 1.4000 5 1 3.5453 1.4401 -0.7001 6 1 1.4453 2.6526 -0.7000 7 6 2.0090 -1.2040 -0.0005 8 1 3.0770 -1.2108 -0.1603 9 7 1.3395 -2.3810 0.2016 10 6 1.8135 -3.5256 -0.3291 11 8 2.7907 -3.5013 -1.0529 12 6 1.1476 -4.8069 -0.0323 13 6 -0.2471 -4.9168 -0.0945 14 6 -0.8226 -6.1423 0.1885 15 6 -0.0136 -7.2109 0.5321 16 6 -0.6425 -8.5438 0.8469 17 6 -2.1437 -8.5645 1.1419 18 6 -1.1373 -8.7714 2.2766 19 7 1.2980 -7.0842 0.5895 20 6 1.8996 -5.9372 0.3237 21 8 3.2494 -5.8525 0.3956 22 6 0.1078 -2.3963 0.9947 23 6 0.1190 -1.6516 2.3312 24 6 0.1229 -3.1815 2.3078 25 1 -0.4850 0.8369 0.0727 26 1 -0.8579 -4.0668 -0.3608 27 1 -1.8949 -6.2629 0.1461 28 1 -0.2217 -9.3989 0.3177 29 1 -2.6763 -7.6141 1.1088 30 1 -2.7104 -9.4334 0.8073 31 1 -1.0424 -9.7763 2.6880 32 1 -1.0075 -7.9574 2.9898 33 1 3.5817 -5.5997 1.2678 34 1 -0.8199 -2.3903 0.4226 35 1 1.0427 -1.1507 2.6206 36 1 -0.8015 -1.1554 2.6386 37 1 -0.7950 -3.6917 2.5996 38 1 1.0490 -3.6870 2.5814 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930617607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = 33.085628 kcal Electronic energy + Delta-G solvation = -23169.269575 eV Core-core repulsion = 19786.745361 eV Total energy + Delta-G solvation = -3382.524214 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.50829 -38.63119 -37.57360 -36.12767 -35.90928 -33.15520 -32.26494 -31.09611 -29.79633 -25.80535 -24.41064 -23.28230 -22.21581 -21.96739 -21.47117 -20.87043 -19.55800 -18.05335 -17.01942 -16.75800 -16.44214 -15.91632 -15.21890 -14.97304 -14.77299 -14.47307 -14.06805 -13.57922 -13.26805 -13.03968 -12.88376 -12.23992 -12.15750 -11.90100 -11.56360 -11.38526 -11.26505 -11.15542 -10.81732 -10.69385 -10.57885 -10.50744 -10.39240 -9.97111 -9.66005 -9.33161 -9.23744 -8.93705 -8.53600 -8.26127 -7.76574 -6.38241 -3.99281 1.10953 1.48015 3.11984 3.21931 3.26869 3.47755 3.60593 3.86687 4.05737 4.23778 4.52805 4.60498 4.65338 4.76100 4.82804 5.02527 5.08740 5.22426 5.31368 5.37728 5.51776 5.64314 5.68776 5.73199 5.79216 5.91123 5.96031 5.97802 6.13395 6.17125 6.35012 6.40769 6.64235 6.73518 6.82177 7.02864 7.48230 7.85406 8.05120 8.18806 8.40666 9.09318 9.29048 9.88236 10.65792 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.025772 B = 0.005022 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.193025 B = 5574.109229 C = 6173.839426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.042 3.958 3 Si 0.921 3.079 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.283 1.283 7 C -0.308 4.308 8 H 0.098 0.902 9 N -0.409 5.409 10 C 0.493 3.507 11 O -0.561 6.561 12 C -0.153 4.153 13 C -0.030 4.030 14 C -0.186 4.186 15 C 0.177 3.823 16 C -0.104 4.104 17 C -0.173 4.173 18 C -0.163 4.163 19 N -0.504 5.504 20 C 0.344 3.656 21 O -0.464 6.464 22 C 0.126 3.874 23 C -0.140 4.140 24 C -0.218 4.218 25 H 0.268 0.732 26 H 0.145 0.855 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.395 0.605 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 -10.760 6.615 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.163 4.163 3 Si 0.747 3.253 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.208 1.208 7 C -0.436 4.436 8 H 0.115 0.885 9 N -0.127 5.127 10 C 0.281 3.719 11 O -0.444 6.444 12 C -0.160 4.160 13 C -0.056 4.056 14 C -0.206 4.206 15 C 0.038 3.962 16 C -0.123 4.123 17 C -0.211 4.211 18 C -0.200 4.200 19 N -0.223 5.223 20 C 0.164 3.836 21 O -0.269 6.269 22 C 0.021 3.979 23 C -0.177 4.177 24 C -0.256 4.256 25 H 0.078 0.922 26 H 0.163 0.837 27 H 0.155 0.845 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.252 0.748 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.160 -11.374 5.806 14.178 hybrid contribution -0.153 1.776 0.326 1.812 sum -6.313 -9.598 6.131 13.022 Atomic orbital electron populations 1.69882 1.05898 1.27902 1.46635 1.25304 0.95408 0.99523 0.96094 0.85996 0.79704 0.81167 0.78385 1.20337 1.19260 1.20849 1.19585 0.93096 0.82251 1.48623 0.88480 1.42995 1.21337 1.06147 1.42271 1.17575 0.87108 0.82892 0.84344 1.90681 1.28459 1.86070 1.39221 1.21373 0.94312 0.96364 1.03952 1.21855 0.93428 0.97574 0.92750 1.21781 1.01301 0.93255 1.04286 1.19982 0.87649 0.93738 0.94801 1.20755 0.95881 0.95240 1.00427 1.23110 0.91257 1.03759 1.02936 1.22967 1.02874 1.03131 0.91064 1.66782 1.11710 1.26487 1.17325 1.19042 0.84257 0.86716 0.93584 1.84783 1.14967 1.90885 1.36311 1.21186 0.89660 1.01631 0.85433 1.22739 1.02427 0.91743 1.00835 1.23492 1.01666 0.95832 1.04642 0.92160 0.83698 0.84488 0.86235 0.88070 0.88160 0.88342 0.88597 0.74779 0.87581 0.89076 0.89604 0.89564 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.73 10.78 55.50 0.60 -21.14 16 2 C 0.04 1.06 4.78 -17.45 -0.08 0.98 16 3 Si 0.92 20.08 29.57 -169.99 -5.03 15.06 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.31 -8.26 8.74 -14.99 -0.13 -8.40 16 8 H 0.10 2.75 7.55 -52.49 -0.40 2.36 16 9 N -0.41 -10.10 2.91 -108.94 -0.32 -10.41 16 10 C 0.49 12.26 6.94 -12.52 -0.09 12.17 16 11 O -0.56 -16.16 16.21 -6.38 -0.10 -16.26 16 12 C -0.15 -3.13 4.60 -104.69 -0.48 -3.61 16 13 C -0.03 -0.51 7.62 -38.87 -0.30 -0.81 16 14 C -0.19 -2.64 9.34 -39.50 -0.37 -3.01 16 15 C 0.18 2.64 6.46 -82.52 -0.53 2.10 16 16 C -0.10 -1.18 6.21 -91.77 -0.57 -1.75 16 17 C -0.17 -1.48 9.79 -26.69 -0.26 -1.74 16 18 C -0.16 -1.52 10.24 -26.69 -0.27 -1.80 16 19 N -0.50 -8.95 10.28 -9.19 -0.09 -9.04 16 20 C 0.34 6.73 7.75 -16.59 -0.13 6.61 16 21 O -0.46 -9.00 12.53 -29.62 -0.37 -9.38 16 22 C 0.13 2.64 2.26 -67.93 -0.15 2.48 16 23 C -0.14 -2.71 8.61 -26.73 -0.23 -2.95 16 24 C -0.22 -3.79 8.39 -26.73 -0.22 -4.02 16 25 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 26 H 0.15 2.43 6.01 -52.49 -0.32 2.11 16 27 H 0.14 1.49 6.21 -52.49 -0.33 1.17 16 28 H 0.12 1.31 8.14 -51.92 -0.42 0.88 16 29 H 0.10 0.82 6.37 -51.93 -0.33 0.49 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.39 5.75 9.06 45.56 0.41 6.16 16 34 H 0.11 2.24 6.78 -51.93 -0.35 1.89 16 35 H 0.09 1.92 7.95 -51.93 -0.41 1.51 16 36 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -31.97 320.52 -8.12 -40.09 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -3.81 Total: 10.00 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -3.82 Total: -3.74 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.19 Total: -40.59 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.47 Total: -25.64 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.03 Total: 15.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.97 -8.12 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930617607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.178 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds