Wall clock time and date at job start Tue Mar 31 2020 06:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31380 * 1 3 3 Si 1.86798 * 120.00054 * 2 1 4 4 H 1.48494 * 109.47192 * 90.00432 * 3 2 1 5 5 H 1.48501 * 109.47101 * 210.00427 * 3 2 1 6 6 H 1.48496 * 109.47196 * 330.00249 * 3 2 1 7 7 C 1.39031 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00077 * 170.16430 * 7 2 1 9 9 N 1.36902 * 119.99563 * 350.15668 * 7 2 1 10 10 C 1.34779 * 119.99580 * 151.88090 * 9 7 2 11 11 O 1.21624 * 119.99998 * 355.63706 * 10 9 7 12 12 C 1.47423 * 119.99891 * 175.62971 * 10 9 7 13 13 C 1.40042 * 120.60427 * 45.68888 * 12 10 9 14 14 C 1.38324 * 118.34537 * 179.77969 * 13 12 10 15 15 C 1.38366 * 119.45953 * 0.52122 * 14 13 12 16 16 C 1.50700 * 119.39712 * 179.69897 * 15 14 13 17 17 C 1.53002 * 117.49984 * 343.76661 * 16 15 14 18 18 C 1.52996 * 117.50058 * 275.10395 * 16 15 14 19 19 N 1.31892 * 121.20327 * 359.71627 * 15 14 13 20 20 C 1.32219 * 121.80644 * 0.02562 * 19 15 14 21 21 O 1.35431 * 119.80742 * 179.97438 * 20 19 15 22 22 C 1.46501 * 120.00459 * 331.88705 * 9 7 2 23 23 C 1.52999 * 117.49646 * 312.99654 * 22 9 7 24 24 C 1.52998 * 117.49687 * 244.37441 * 22 9 7 25 25 H 0.96996 * 119.99919 * 355.03171 * 1 2 3 26 26 H 1.08002 * 120.82369 * 0.02562 * 13 12 10 27 27 H 1.07991 * 120.26673 * 180.23905 * 14 13 12 28 28 H 1.09010 * 115.54912 * 129.43645 * 16 15 14 29 29 H 1.08994 * 117.50003 * 359.97438 * 17 16 15 30 30 H 1.09005 * 117.49853 * 145.02224 * 17 16 15 31 31 H 1.08999 * 117.50205 * 214.98184 * 18 16 15 32 32 H 1.09005 * 117.49976 * 359.97438 * 18 16 15 33 33 H 0.96702 * 114.00130 * 270.02192 * 21 20 19 34 34 H 1.09000 * 115.55127 * 98.70547 * 22 9 7 35 35 H 1.08996 * 117.50044 * 359.97438 * 23 22 9 36 36 H 1.08997 * 117.50102 * 145.02554 * 23 22 9 37 37 H 1.09003 * 117.49806 * 214.98265 * 24 22 9 38 38 H 1.08999 * 117.50342 * 359.97106 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4954 2.0463 1.4000 5 1 3.5453 1.4401 -0.7001 6 1 1.4453 2.6526 -0.7000 7 6 2.0090 -1.2040 -0.0005 8 1 3.0770 -1.2108 -0.1603 9 7 1.3395 -2.3810 0.2016 10 6 1.8135 -3.5256 -0.3291 11 8 2.7907 -3.5013 -1.0529 12 6 1.1476 -4.8069 -0.0323 13 6 -0.2471 -4.9168 -0.0945 14 6 -0.8226 -6.1423 0.1885 15 6 -0.0136 -7.2109 0.5321 16 6 -0.6425 -8.5438 0.8469 17 6 -2.1437 -8.5645 1.1419 18 6 -1.1373 -8.7714 2.2766 19 7 1.2980 -7.0842 0.5895 20 6 1.8996 -5.9372 0.3237 21 8 3.2494 -5.8525 0.3956 22 6 0.1078 -2.3963 0.9947 23 6 0.1190 -1.6516 2.3312 24 6 0.1229 -3.1815 2.3078 25 1 -0.4850 0.8369 0.0727 26 1 -0.8579 -4.0668 -0.3608 27 1 -1.8949 -6.2629 0.1461 28 1 -0.2217 -9.3989 0.3177 29 1 -2.6763 -7.6141 1.1088 30 1 -2.7104 -9.4334 0.8073 31 1 -1.0424 -9.7763 2.6880 32 1 -1.0075 -7.9574 2.9898 33 1 3.5817 -5.5997 1.2678 34 1 -0.8199 -2.3903 0.4226 35 1 1.0427 -1.1507 2.6206 36 1 -0.8015 -1.1554 2.6386 37 1 -0.7950 -3.6917 2.5996 38 1 1.0490 -3.6870 2.5814 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930617607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:52 Heat of formation + Delta-G solvation = 10.408978 kcal Electronic energy + Delta-G solvation = -23170.252908 eV Core-core repulsion = 19786.745361 eV Total energy + Delta-G solvation = -3383.507547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.91265 -40.24796 -38.81276 -37.83198 -37.11191 -34.98715 -33.73423 -32.91994 -31.13850 -27.51446 -25.87325 -24.52855 -23.53401 -23.08544 -22.90400 -22.08631 -21.21795 -19.45667 -18.84409 -18.09599 -17.87107 -17.30117 -17.06298 -16.24447 -16.10739 -15.83054 -15.63188 -15.23460 -14.83056 -14.45723 -14.25956 -13.81056 -13.63718 -13.15505 -12.92493 -12.88798 -12.76378 -12.58553 -12.29817 -12.19964 -12.15890 -11.71644 -11.50457 -11.28628 -11.21602 -10.82430 -10.71136 -10.62154 -10.21437 -9.74618 -9.60457 -8.31998 -6.02118 -0.24364 0.15544 1.36379 1.41184 1.51020 1.95030 2.22990 2.41418 2.60379 2.88169 2.99446 3.10839 3.22613 3.44553 3.75145 3.84614 4.01068 4.03714 4.15149 4.18174 4.26163 4.33810 4.43081 4.52104 4.66787 4.76876 4.87593 4.88923 5.05688 5.09751 5.16306 5.27162 5.32020 5.35047 5.39737 5.44758 5.51504 6.07074 6.47088 6.56865 6.87447 7.13926 7.38529 7.98302 8.69745 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.025772 B = 0.005022 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.193025 B = 5574.109229 C = 6173.839426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.019 3.981 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.347 4.347 8 H 0.064 0.936 9 N -0.415 5.415 10 C 0.483 3.517 11 O -0.621 6.621 12 C -0.181 4.181 13 C -0.026 4.026 14 C -0.169 4.169 15 C 0.184 3.816 16 C -0.132 4.132 17 C -0.149 4.149 18 C -0.158 4.158 19 N -0.517 5.517 20 C 0.332 3.668 21 O -0.485 6.485 22 C 0.105 3.895 23 C -0.142 4.142 24 C -0.178 4.178 25 H 0.275 0.725 26 H 0.148 0.852 27 H 0.182 0.818 28 H 0.122 0.878 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.409 0.591 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.366 -12.034 8.071 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.186 4.186 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.475 4.475 8 H 0.082 0.918 9 N -0.132 5.132 10 C 0.273 3.727 11 O -0.508 6.508 12 C -0.188 4.188 13 C -0.052 4.052 14 C -0.188 4.188 15 C 0.046 3.954 16 C -0.151 4.151 17 C -0.186 4.186 18 C -0.196 4.196 19 N -0.237 5.237 20 C 0.153 3.847 21 O -0.293 6.293 22 C 0.001 3.999 23 C -0.180 4.180 24 C -0.216 4.216 25 H 0.085 0.915 26 H 0.165 0.835 27 H 0.199 0.801 28 H 0.140 0.860 29 H 0.130 0.870 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.108 0.892 33 H 0.268 0.732 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.142 0.858 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.495 -12.644 7.306 17.418 hybrid contribution 0.795 2.065 -0.116 2.216 sum -8.700 -10.579 7.190 15.469 Atomic orbital electron populations 1.69922 1.06334 1.28914 1.45576 1.25876 0.96273 1.01424 0.95031 0.85176 0.78016 0.77794 0.78911 1.18823 1.20715 1.19721 1.19459 0.92284 0.84179 1.51543 0.91807 1.43140 1.22089 1.05533 1.42429 1.18276 0.86554 0.84489 0.83371 1.90611 1.31123 1.87302 1.41784 1.21026 0.95798 0.94356 1.07605 1.21928 0.91809 0.99045 0.92415 1.22163 1.03300 0.91364 1.01984 1.20759 0.86783 0.95636 0.92245 1.20846 0.98359 0.93219 1.02645 1.23287 0.89358 1.05258 1.00698 1.23070 1.02494 1.03947 0.90054 1.66909 1.13382 1.25312 1.18058 1.19126 0.84125 0.87158 0.94256 1.84719 1.15713 1.91034 1.37878 1.21236 0.87905 1.04813 0.85989 1.22720 1.02112 0.93338 0.99804 1.23462 1.02946 0.94550 1.00685 0.91488 0.83476 0.80120 0.85997 0.87046 0.85878 0.86699 0.89164 0.73152 0.87711 0.91386 0.87858 0.85797 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.56 10.78 21.68 0.23 -43.32 16 2 C 0.02 0.97 4.78 84.95 0.41 1.38 16 3 Si 0.98 41.74 29.57 68.60 2.03 43.77 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.35 -19.58 8.74 84.09 0.73 -18.85 16 8 H 0.06 3.92 7.55 -2.91 -0.02 3.90 16 9 N -0.42 -21.34 2.91 -616.81 -1.79 -23.14 16 10 C 0.48 25.36 6.94 86.66 0.60 25.97 16 11 O -0.62 -38.40 16.21 7.02 0.11 -38.29 16 12 C -0.18 -7.56 4.60 -19.91 -0.09 -7.65 16 13 C -0.03 -0.85 7.62 22.73 0.17 -0.68 16 14 C -0.17 -4.22 9.34 22.32 0.21 -4.01 16 15 C 0.18 5.01 6.46 42.58 0.28 5.29 16 16 C -0.13 -2.51 6.21 -11.54 -0.07 -2.58 16 17 C -0.15 -1.75 9.79 30.62 0.30 -1.45 16 18 C -0.16 -2.30 10.24 30.62 0.31 -1.98 16 19 N -0.52 -17.96 10.28 -296.00 -3.04 -21.00 16 20 C 0.33 13.30 7.75 85.15 0.66 13.96 16 21 O -0.49 -19.90 12.53 -76.14 -0.95 -20.85 16 22 C 0.10 4.36 2.26 44.99 0.10 4.46 16 23 C -0.14 -5.40 8.61 30.59 0.26 -5.14 16 24 C -0.18 -5.90 8.39 30.59 0.26 -5.65 16 25 H 0.28 12.85 8.31 -92.71 -0.77 12.08 16 26 H 0.15 4.73 6.01 -2.91 -0.02 4.72 16 27 H 0.18 2.91 6.21 -2.91 -0.02 2.89 16 28 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.11 1.11 6.37 -2.39 -0.02 1.09 16 30 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.41 12.87 9.06 -74.06 -0.67 12.20 16 34 H 0.11 4.36 6.78 -2.39 -0.02 4.34 16 35 H 0.07 2.90 7.95 -2.39 -0.02 2.88 16 36 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 37 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.07 2.51 8.10 -2.39 -0.02 2.49 16 Total: -1.00 -73.95 320.52 1.15 -72.80 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.44 Total: 26.97 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 4.13 Total: 3.07 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -4.60 Total: -87.46 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -0.84 Total: -59.14 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -73.95 1.15 -72.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930617607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.205 kcal (2) G-P(sol) polarization free energy of solvation -73.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds