Wall clock time and date at job start Tue Mar 31 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00122 * 2 1 4 4 H 1.48498 * 109.47149 * 274.99080 * 3 2 1 5 5 H 1.48494 * 109.47039 * 34.99332 * 3 2 1 6 6 H 1.48504 * 109.46832 * 154.98966 * 3 2 1 7 7 C 1.38807 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00362 * 185.06431 * 7 2 1 9 9 N 1.36940 * 120.00145 * 5.05599 * 7 2 1 10 10 C 1.47577 * 134.49458 * 173.48138 * 9 7 2 11 11 C 1.53950 * 86.11845 * 155.35919 * 10 9 7 12 12 N 1.46499 * 113.74257 * 137.94938 * 11 10 9 13 13 C 1.34777 * 119.99673 * 156.92822 * 12 11 10 14 14 O 1.21278 * 120.00415 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99546 * 180.02562 * 13 12 11 16 16 H 1.08999 * 110.66829 * 301.77681 * 15 13 12 17 17 C 1.54706 * 110.75496 * 64.99971 * 15 13 12 18 18 C 1.51641 * 101.94031 * 93.09262 * 17 15 13 19 19 C 1.37752 * 132.16627 * 195.60191 * 18 17 15 20 20 C 1.38346 * 119.97633 * 178.84279 * 19 18 17 21 21 C 1.38284 * 119.76780 * 0.27629 * 20 19 18 22 22 C 1.37931 * 120.35338 * 0.18588 * 21 20 19 23 23 C 1.38882 * 107.05414 * 15.38238 * 18 17 15 24 24 O 1.36132 * 111.22519 * 1.52344 * 23 18 17 25 25 C 1.47814 * 134.45413 * 353.35410 * 9 7 2 26 26 H 0.97002 * 119.99540 * 359.97438 * 1 2 3 27 27 H 1.09006 * 113.77104 * 41.06244 * 10 9 7 28 28 H 1.09004 * 113.77465 * 269.66066 * 10 9 7 29 29 H 1.09000 * 113.74466 * 269.16076 * 11 10 9 30 30 H 0.97001 * 120.00124 * 336.93467 * 12 11 10 31 31 H 1.09000 * 110.93418 * 334.93390 * 17 15 13 32 32 H 1.09000 * 110.93621 * 211.25558 * 17 15 13 33 33 H 1.07997 * 120.00897 * 359.12346 * 19 18 17 34 34 H 1.07997 * 120.11346 * 180.25738 * 20 19 18 35 35 H 1.08008 * 119.82303 * 180.20388 * 21 20 19 36 36 H 1.08002 * 119.87895 * 179.97438 * 22 21 20 37 37 H 1.08996 * 113.77113 * 90.37359 * 25 9 7 38 38 H 1.09007 * 113.83325 * 318.91243 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2041 0.0820 9 7 1.3295 -2.3857 -0.1056 10 6 1.7285 -3.7983 -0.2581 11 6 0.3709 -4.1419 0.3812 12 7 -0.3177 -5.2631 -0.2631 13 6 -1.2390 -5.9705 0.4203 14 8 -1.4978 -5.6793 1.5688 15 6 -1.9469 -7.1241 -0.2424 16 1 -2.4689 -6.7911 -1.1394 17 6 -0.9505 -8.2591 -0.5776 18 6 -1.0565 -9.1425 0.6503 19 6 -0.2570 -10.1553 1.1326 20 6 -0.5858 -10.7912 2.3165 21 6 -1.7209 -10.4101 3.0083 22 6 -2.5280 -9.4027 2.5223 23 6 -2.2059 -8.7598 1.3294 24 8 -2.8611 -7.7663 0.6684 25 6 -0.1002 -2.7608 -0.1093 26 1 -0.4849 0.8401 0.0004 27 1 2.5859 -4.0811 0.3528 28 1 1.8194 -4.1197 -1.2957 29 1 0.4075 -4.2330 1.4668 30 1 -0.1104 -5.4963 -1.1816 31 1 0.0609 -7.8687 -0.6904 32 1 -1.2606 -8.7978 -1.4730 33 1 0.6286 -10.4497 0.5892 34 1 0.0416 -11.5827 2.6988 35 1 -1.9767 -10.9037 3.9343 36 1 -3.4130 -9.1115 3.0686 37 1 -0.5477 -2.7767 -1.1030 38 1 -0.7003 -2.2167 0.6202 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030634252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:32 Heat of formation + Delta-G solvation = 23.358329 kcal Electronic energy + Delta-G solvation = -22144.259778 eV Core-core repulsion = 18761.313756 eV Total energy + Delta-G solvation = -3382.946021 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.54788 -39.28317 -37.77876 -37.03090 -33.82134 -32.80339 -31.81338 -30.17925 -29.67294 -27.42789 -24.91444 -24.81261 -23.02917 -22.44281 -21.78063 -20.45386 -19.70804 -17.81813 -17.08233 -16.95822 -16.77430 -15.91805 -15.74387 -15.05138 -14.82191 -14.33320 -14.29230 -13.86537 -13.68149 -13.39728 -13.23673 -12.83622 -12.65067 -12.01252 -11.96904 -11.82491 -11.74675 -11.51111 -11.45708 -10.97590 -10.90621 -10.82612 -10.51023 -10.07633 -9.63021 -9.55643 -9.04969 -8.84096 -8.54138 -8.25384 -6.95369 -5.82433 -3.15876 1.12192 1.23050 2.65853 2.92751 3.36306 3.39169 3.43844 3.45002 3.61133 4.18121 4.27933 4.41637 4.68399 4.70311 4.88815 4.99281 5.05837 5.10313 5.22834 5.33411 5.41456 5.44156 5.49285 5.53606 5.84614 5.94873 6.14384 6.15381 6.24045 6.31175 6.34868 6.41574 6.49704 6.66845 7.01102 7.19185 7.29169 7.50933 7.74201 7.91810 8.39740 8.98522 9.64959 10.51517 11.34816 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.037132 B = 0.003130 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.886379 B = 8944.594954 C = 9080.415910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.083 0.917 9 N -0.606 5.606 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.710 5.710 13 C 0.495 3.505 14 O -0.521 6.521 15 C 0.062 3.938 16 H 0.142 0.858 17 C -0.099 4.099 18 C -0.176 4.176 19 C -0.069 4.069 20 C -0.151 4.151 21 C -0.086 4.086 22 C -0.134 4.134 23 C 0.114 3.886 24 O -0.275 6.275 25 C 0.157 3.843 26 H 0.255 0.745 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.110 0.890 30 H 0.397 0.603 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.031 0.969 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -22.411 -1.469 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.356 4.356 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.014 4.014 11 C -0.013 4.013 12 N -0.362 5.362 13 C 0.279 3.721 14 O -0.396 6.396 15 C 0.002 3.998 16 H 0.160 0.840 17 C -0.136 4.136 18 C -0.177 4.177 19 C -0.087 4.087 20 C -0.170 4.170 21 C -0.104 4.104 22 C -0.152 4.152 23 C 0.069 3.931 24 O -0.187 6.187 25 C 0.030 3.970 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.128 0.872 30 H 0.231 0.769 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.049 0.951 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.978 -21.737 -0.564 21.948 hybrid contribution 0.631 0.952 -0.719 1.350 sum -2.347 -20.785 -1.283 20.957 Atomic orbital electron populations 1.69847 1.05112 1.25595 1.55642 1.24860 0.95700 0.97700 1.01920 0.86088 0.78748 0.83349 0.77516 1.21543 1.21604 1.20450 1.18986 0.90744 0.81653 1.44190 0.89973 1.45694 1.02375 1.00543 1.84694 1.22867 0.94574 0.86820 0.97108 1.23985 0.93392 0.85195 0.98772 1.46082 1.40538 1.33179 1.16413 1.20701 0.80508 0.83639 0.87294 1.90747 1.63258 1.68392 1.17215 1.23451 0.91164 0.92606 0.92588 0.84040 1.21774 1.00788 0.93996 0.97040 1.20736 0.98427 1.00794 0.97696 1.20282 0.98371 0.94265 0.95824 1.21016 0.98237 1.01644 0.96068 1.20879 0.94197 0.95886 0.99443 1.20304 1.02620 0.98879 0.93415 1.19582 0.91733 0.89326 0.92487 1.87024 1.33149 1.45375 1.53146 1.22662 0.88114 0.87910 0.98270 0.93470 0.93245 0.94661 0.87208 0.76920 0.88334 0.87972 0.85757 0.85527 0.85195 0.85350 0.95075 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.41 11.51 55.49 0.64 -26.77 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 22.10 29.56 -169.99 -5.02 17.07 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.40 10.69 -15.06 -0.16 -6.56 16 8 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 9 N -0.61 -15.47 3.70 -177.86 -0.66 -16.13 16 10 C 0.11 2.21 8.69 -2.97 -0.03 2.19 16 11 C 0.09 1.75 4.40 -70.13 -0.31 1.45 16 12 N -0.71 -10.49 5.21 -55.33 -0.29 -10.78 16 13 C 0.49 7.90 7.07 -10.99 -0.08 7.82 16 14 O -0.52 -10.94 16.17 -13.18 -0.21 -11.16 16 15 C 0.06 0.74 4.10 -26.98 -0.11 0.63 16 16 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.10 -0.92 6.63 -26.52 -0.18 -1.09 16 18 C -0.18 -2.05 6.26 -104.10 -0.65 -2.71 16 19 C -0.07 -0.70 10.03 -39.72 -0.40 -1.09 16 20 C -0.15 -1.42 10.07 -39.52 -0.40 -1.82 16 21 C -0.09 -0.85 10.02 -39.68 -0.40 -1.25 16 22 C -0.13 -1.63 10.06 -39.30 -0.40 -2.02 16 23 C 0.11 1.56 6.89 -38.95 -0.27 1.30 16 24 O -0.27 -4.03 10.47 -38.90 -0.41 -4.44 16 25 C 0.16 3.73 7.24 -2.83 -0.02 3.71 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 29 H 0.11 2.34 7.51 -51.93 -0.39 1.95 16 30 H 0.40 4.41 8.71 -40.82 -0.36 4.06 16 31 H 0.10 0.82 7.78 -51.93 -0.40 0.41 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.99 7.37 -51.92 -0.38 1.61 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -35.51 326.02 -9.41 -44.91 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.88 Total: 2.05 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -3.49 Total: 0.33 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.31 Total: -53.67 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.62 Total: -15.60 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.51 -9.41 -44.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030634252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.271 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds