Wall clock time and date at job start Tue Mar 31 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 120.00122 * 2 1 4 4 H 1.48498 * 109.47149 * 274.99080 * 3 2 1 5 5 H 1.48494 * 109.47039 * 34.99332 * 3 2 1 6 6 H 1.48504 * 109.46832 * 154.98966 * 3 2 1 7 7 C 1.38807 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00362 * 185.06431 * 7 2 1 9 9 N 1.36940 * 120.00145 * 5.05599 * 7 2 1 10 10 C 1.47577 * 134.49458 * 173.48138 * 9 7 2 11 11 C 1.53950 * 86.11845 * 155.35919 * 10 9 7 12 12 N 1.46499 * 113.74257 * 137.94938 * 11 10 9 13 13 C 1.34777 * 119.99673 * 156.92822 * 12 11 10 14 14 O 1.21278 * 120.00415 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99546 * 180.02562 * 13 12 11 16 16 H 1.08999 * 110.66829 * 301.77681 * 15 13 12 17 17 C 1.54706 * 110.75496 * 64.99971 * 15 13 12 18 18 C 1.51641 * 101.94031 * 93.09262 * 17 15 13 19 19 C 1.37752 * 132.16627 * 195.60191 * 18 17 15 20 20 C 1.38346 * 119.97633 * 178.84279 * 19 18 17 21 21 C 1.38284 * 119.76780 * 0.27629 * 20 19 18 22 22 C 1.37931 * 120.35338 * 0.18588 * 21 20 19 23 23 C 1.38882 * 107.05414 * 15.38238 * 18 17 15 24 24 O 1.36132 * 111.22519 * 1.52344 * 23 18 17 25 25 C 1.47814 * 134.45413 * 353.35410 * 9 7 2 26 26 H 0.97002 * 119.99540 * 359.97438 * 1 2 3 27 27 H 1.09006 * 113.77104 * 41.06244 * 10 9 7 28 28 H 1.09004 * 113.77465 * 269.66066 * 10 9 7 29 29 H 1.09000 * 113.74466 * 269.16076 * 11 10 9 30 30 H 0.97001 * 120.00124 * 336.93467 * 12 11 10 31 31 H 1.09000 * 110.93418 * 334.93390 * 17 15 13 32 32 H 1.09000 * 110.93621 * 211.25558 * 17 15 13 33 33 H 1.07997 * 120.00897 * 359.12346 * 19 18 17 34 34 H 1.07997 * 120.11346 * 180.25738 * 20 19 18 35 35 H 1.08008 * 119.82303 * 180.20388 * 21 20 19 36 36 H 1.08002 * 119.87895 * 179.97438 * 22 21 20 37 37 H 1.08996 * 113.77113 * 90.37359 * 25 9 7 38 38 H 1.09007 * 113.83325 * 318.91243 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2041 0.0820 9 7 1.3295 -2.3857 -0.1056 10 6 1.7285 -3.7983 -0.2581 11 6 0.3709 -4.1419 0.3812 12 7 -0.3177 -5.2631 -0.2631 13 6 -1.2390 -5.9705 0.4203 14 8 -1.4978 -5.6793 1.5688 15 6 -1.9469 -7.1241 -0.2424 16 1 -2.4689 -6.7911 -1.1394 17 6 -0.9505 -8.2591 -0.5776 18 6 -1.0565 -9.1425 0.6503 19 6 -0.2570 -10.1553 1.1326 20 6 -0.5858 -10.7912 2.3165 21 6 -1.7209 -10.4101 3.0083 22 6 -2.5280 -9.4027 2.5223 23 6 -2.2059 -8.7598 1.3294 24 8 -2.8611 -7.7663 0.6684 25 6 -0.1002 -2.7608 -0.1093 26 1 -0.4849 0.8401 0.0004 27 1 2.5859 -4.0811 0.3528 28 1 1.8194 -4.1197 -1.2957 29 1 0.4075 -4.2330 1.4668 30 1 -0.1104 -5.4963 -1.1816 31 1 0.0609 -7.8687 -0.6904 32 1 -1.2606 -8.7978 -1.4730 33 1 0.6286 -10.4497 0.5892 34 1 0.0416 -11.5827 2.6988 35 1 -1.9767 -10.9037 3.9343 36 1 -3.4130 -9.1115 3.0686 37 1 -0.5477 -2.7767 -1.1030 38 1 -0.7003 -2.2167 0.6202 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030634252.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:31 Heat of formation + Delta-G solvation = -0.954846 kcal Electronic energy + Delta-G solvation = -22145.314076 eV Core-core repulsion = 18761.313756 eV Total energy + Delta-G solvation = -3384.000320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.48674 -40.66685 -39.18821 -38.11196 -35.31412 -34.10766 -33.37005 -30.97956 -30.68291 -29.25458 -26.65343 -26.01439 -24.57065 -23.38759 -22.57342 -21.70239 -21.39356 -18.95153 -18.78261 -18.01591 -17.93045 -17.13469 -16.99079 -16.65911 -16.10667 -15.74333 -15.60536 -15.17629 -14.67505 -14.57741 -14.22241 -14.03812 -13.72860 -13.57311 -13.37563 -13.23752 -12.84249 -12.80071 -12.68671 -12.64193 -12.52835 -12.31810 -11.96760 -11.74359 -11.54486 -10.93041 -10.87410 -10.04971 -9.82350 -9.12686 -8.98377 -7.95354 -5.29961 0.33564 0.40908 1.44152 1.44994 1.47131 1.56368 1.86216 2.32657 2.48360 2.81029 3.21687 3.35141 3.38372 3.48728 3.66064 3.81064 3.94113 4.18707 4.25091 4.27597 4.33274 4.48754 4.52869 4.65110 4.72107 4.74010 4.79185 4.89042 5.09862 5.10844 5.19658 5.38205 5.44430 5.45871 5.55240 5.62263 5.67052 5.86543 6.17989 6.51536 6.85636 7.18606 7.55940 8.48985 9.22169 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.037132 B = 0.003130 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.886379 B = 8944.594954 C = 9080.415910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.982 3.018 4 H -0.284 1.284 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.236 4.236 8 H 0.092 0.908 9 N -0.639 5.639 10 C 0.126 3.874 11 C 0.119 3.881 12 N -0.691 5.691 13 C 0.492 3.508 14 O -0.580 6.580 15 C 0.063 3.937 16 H 0.178 0.822 17 C -0.087 4.087 18 C -0.187 4.187 19 C -0.076 4.076 20 C -0.149 4.149 21 C -0.091 4.091 22 C -0.159 4.159 23 C 0.071 3.929 24 O -0.302 6.302 25 C 0.154 3.846 26 H 0.249 0.751 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.420 0.580 31 H 0.113 0.887 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.124 0.876 37 H 0.032 0.968 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -24.727 -3.002 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.367 5.367 10 C 0.000 4.000 11 C 0.013 3.987 12 N -0.345 5.345 13 C 0.279 3.721 14 O -0.459 6.459 15 C 0.004 3.996 16 H 0.195 0.805 17 C -0.124 4.124 18 C -0.188 4.188 19 C -0.094 4.094 20 C -0.167 4.167 21 C -0.109 4.109 22 C -0.178 4.178 23 C 0.027 3.973 24 O -0.215 6.215 25 C 0.027 3.973 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.258 0.742 31 H 0.132 0.868 32 H 0.156 0.844 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.173 0.827 36 H 0.142 0.858 37 H 0.050 0.950 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.837 -24.121 -2.145 24.231 hybrid contribution -0.030 1.549 -0.177 1.559 sum -0.867 -22.572 -2.322 22.708 Atomic orbital electron populations 1.70053 1.06744 1.25772 1.57696 1.25749 0.96541 1.01286 1.02600 0.85007 0.77887 0.78749 0.77376 1.21093 1.22465 1.18786 1.19439 0.91429 0.82936 1.42649 0.89074 1.46019 1.03265 1.02212 1.85178 1.23013 0.94682 0.83140 0.99128 1.23197 0.93408 0.84532 0.97601 1.45746 1.39876 1.31527 1.17328 1.21599 0.79757 0.84170 0.86598 1.90725 1.64966 1.70149 1.20043 1.23685 0.91830 0.91646 0.92426 0.80468 1.21875 1.00715 0.92506 0.97316 1.21129 0.97779 1.01426 0.98429 1.20710 0.98911 0.93605 0.96133 1.21477 0.97907 1.01715 0.95617 1.21234 0.94076 0.95186 1.00357 1.20603 1.03389 1.00077 0.93719 1.19992 0.93364 0.90238 0.93741 1.86983 1.34448 1.46038 1.54062 1.22552 0.87360 0.90263 0.97082 0.94255 0.91739 0.90954 0.89651 0.74155 0.86831 0.84423 0.82925 0.82497 0.82743 0.85839 0.95040 0.95685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.06 11.51 21.65 0.25 -58.81 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.98 45.91 29.56 68.60 2.03 47.94 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.24 -13.23 10.69 84.03 0.90 -12.33 16 8 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 9 N -0.64 -32.57 3.70 -716.62 -2.65 -35.22 16 10 C 0.13 4.63 8.69 86.49 0.75 5.38 16 11 C 0.12 4.54 4.40 46.75 0.21 4.75 16 12 N -0.69 -19.27 5.21 -447.36 -2.33 -21.60 16 13 C 0.49 15.43 7.07 87.66 0.62 16.05 16 14 O -0.58 -25.22 16.17 14.90 0.24 -24.98 16 15 C 0.06 1.40 4.10 30.43 0.12 1.53 16 16 H 0.18 2.53 8.14 -2.39 -0.02 2.51 16 17 C -0.09 -1.33 6.63 30.73 0.20 -1.12 16 18 C -0.19 -3.98 6.26 -19.53 -0.12 -4.11 16 19 C -0.08 -1.30 10.03 22.18 0.22 -1.07 16 20 C -0.15 -2.39 10.07 22.31 0.22 -2.17 16 21 C -0.09 -1.69 10.02 22.21 0.22 -1.46 16 22 C -0.16 -3.96 10.06 22.45 0.23 -3.74 16 23 C 0.07 1.95 6.89 22.68 0.16 2.11 16 24 O -0.30 -8.93 10.47 -77.12 -0.81 -9.73 16 25 C 0.15 7.53 7.24 86.44 0.63 8.15 16 26 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 27 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 29 H 0.09 3.74 7.51 -2.39 -0.02 3.72 16 30 H 0.42 7.88 8.71 -92.71 -0.81 7.08 16 31 H 0.11 1.39 7.78 -2.39 -0.02 1.37 16 32 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 35 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.12 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.02 1.44 7.37 -2.38 -0.02 1.42 16 Total: -1.00 -82.20 326.02 1.83 -80.37 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.27 Total: 13.56 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 4.83 Total: 8.47 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -4.73 Total: -115.63 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.57 Total: -34.71 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -82.20 1.83 -80.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030634252.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.419 kcal (2) G-P(sol) polarization free energy of solvation -82.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds