Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00398 * 2 1 4 4 H 1.48493 * 109.47048 * 239.99751 * 3 2 1 5 5 H 1.48496 * 109.46668 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47103 * 119.99727 * 3 2 1 7 7 C 1.38816 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99821 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.48906 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11463 * 155.36127 * 10 9 7 12 12 N 1.46504 * 113.74344 * 269.26153 * 11 10 9 13 13 C 1.34778 * 119.99807 * 204.99729 * 12 11 10 14 14 O 1.21276 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99977 * 179.97438 * 13 12 11 16 16 H 1.09006 * 110.82757 * 56.29251 * 15 13 12 17 17 C 1.54706 * 110.93952 * 292.54773 * 15 13 12 18 18 O 1.43772 * 102.78524 * 267.12379 * 17 15 13 19 19 C 1.36137 * 109.23441 * 332.25793 * 18 17 15 20 20 C 1.39288 * 129.88040 * 198.39265 * 19 18 17 21 21 C 1.37933 * 120.23949 * 181.01835 * 20 19 18 22 22 C 1.38289 * 120.35004 * 359.97438 * 21 20 19 23 23 C 1.38352 * 119.76785 * 359.80595 * 22 21 20 24 24 C 1.37744 * 119.97621 * 0.03969 * 23 22 21 25 25 C 1.47573 * 134.49418 * 0.02562 * 9 7 2 26 26 H 0.97001 * 119.99179 * 0.02562 * 1 2 3 27 27 H 1.08996 * 113.77114 * 41.06470 * 10 9 7 28 28 H 1.09000 * 113.77347 * 269.66390 * 10 9 7 29 29 H 1.09004 * 113.74083 * 137.95224 * 11 10 9 30 30 H 0.96993 * 120.00029 * 25.00079 * 12 11 10 31 31 H 1.09000 * 110.75232 * 25.44645 * 17 15 13 32 32 H 1.09004 * 110.74831 * 148.80355 * 17 15 13 33 33 H 1.07995 * 119.88507 * 0.99180 * 20 19 18 34 34 H 1.07994 * 119.82634 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.11862 * 179.83713 * 22 21 20 36 36 H 1.07994 * 120.01166 * 180.02562 * 23 22 21 37 37 H 1.09003 * 113.77162 * 90.33937 * 25 9 7 38 38 H 1.09004 * 113.77283 * 318.93909 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.7200 -3.8102 0.0005 11 6 0.3468 -4.0829 0.6409 12 7 0.3629 -4.0548 2.1055 13 6 -0.5659 -4.7386 2.8029 14 8 -1.4147 -5.3774 2.2178 15 6 -0.5490 -4.7102 4.3095 16 1 -0.5970 -3.6856 4.6784 17 6 0.6982 -5.4398 4.8623 18 8 0.2168 -6.7782 5.0723 19 6 -1.1221 -6.7402 5.3160 20 6 -1.9510 -7.6952 5.8999 21 6 -3.3026 -7.4539 6.0327 22 6 -3.8468 -6.2628 5.5884 23 6 -3.0294 -5.3071 5.0115 24 6 -1.6789 -5.5447 4.8808 25 6 -0.1033 -2.7573 -0.0004 26 1 -0.4849 0.8401 -0.0004 27 1 2.5622 -4.0325 0.6558 28 1 1.8318 -4.2351 -0.9970 29 1 -0.1594 -4.9597 0.2369 30 1 1.0420 -3.5442 2.5734 31 1 1.5067 -5.4306 4.1313 32 1 1.0213 -4.9937 5.8029 33 1 -1.5342 -8.6281 6.2495 34 1 -3.9393 -8.1992 6.4860 35 1 -4.9059 -6.0789 5.6918 36 1 -3.4501 -4.3753 4.6636 37 1 -0.5265 -2.8734 -0.9982 38 1 -0.7175 -2.1387 0.6541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031477498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = 24.989433 kcal Electronic energy + Delta-G solvation = -22448.969688 eV Core-core repulsion = 19066.094396 eV Total energy + Delta-G solvation = -3382.875291 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47710 -39.21954 -37.51518 -37.34971 -33.41070 -32.77617 -31.75540 -30.11866 -29.36590 -27.50923 -24.85907 -24.46677 -23.24334 -22.45191 -21.96904 -20.18463 -19.30459 -17.74049 -16.95736 -16.78303 -16.64508 -16.07310 -15.51552 -15.19686 -14.89106 -14.35914 -14.05866 -13.77048 -13.65049 -13.49099 -13.06742 -12.74339 -12.67366 -12.56789 -11.91315 -11.79055 -11.51702 -11.28046 -11.24205 -10.90237 -10.85392 -10.63239 -10.29456 -9.88850 -9.64594 -9.54686 -8.96007 -8.86720 -8.43968 -8.20827 -6.95547 -5.81307 -3.15366 1.22000 1.35229 2.79692 3.20095 3.34242 3.37237 3.39562 3.41061 3.81091 4.17659 4.40148 4.44349 4.75898 4.87542 4.98162 5.07046 5.13066 5.27522 5.29074 5.32429 5.43342 5.50656 5.53659 5.59375 5.93804 6.08030 6.20279 6.24225 6.35965 6.36174 6.43807 6.47584 6.51874 6.77407 7.09905 7.17641 7.29218 7.54811 7.90177 7.95695 8.55795 8.98686 9.65250 10.53270 11.34746 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.027204 B = 0.003681 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.994671 B = 7603.963118 C = 7765.117698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.610 5.610 10 C 0.110 3.890 11 C 0.090 3.910 12 N -0.690 5.690 13 C 0.523 3.477 14 O -0.534 6.534 15 C -0.104 4.104 16 H 0.124 0.876 17 C 0.064 3.936 18 O -0.301 6.301 19 C 0.111 3.889 20 C -0.143 4.143 21 C -0.085 4.085 22 C -0.151 4.151 23 C -0.052 4.052 24 C -0.143 4.143 25 C 0.151 3.849 26 H 0.254 0.746 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.404 0.596 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.035 0.965 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 -12.220 13.180 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.338 5.338 10 C -0.017 4.017 11 C -0.016 4.016 12 N -0.340 5.340 13 C 0.307 3.693 14 O -0.410 6.410 15 C -0.126 4.126 16 H 0.142 0.858 17 C -0.012 4.012 18 O -0.215 6.215 19 C 0.066 3.934 20 C -0.161 4.161 21 C -0.103 4.103 22 C -0.169 4.169 23 C -0.070 4.070 24 C -0.144 4.144 25 C 0.024 3.976 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.238 0.762 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.053 0.947 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.264 -12.501 12.727 18.135 hybrid contribution 0.821 1.575 -0.159 1.783 sum -2.443 -10.926 12.568 16.832 Atomic orbital electron populations 1.69823 1.05014 1.25492 1.56174 1.24789 0.95621 0.97498 1.02303 0.86223 0.78483 0.83224 0.77921 1.21202 1.21576 1.21090 1.18969 0.90208 0.82013 1.44397 0.90321 1.46118 1.02246 0.99134 1.86268 1.22926 0.94458 0.86924 0.97354 1.22883 0.99081 1.00270 0.79407 1.45485 1.31666 1.49813 1.07036 1.19953 0.81748 0.79393 0.88159 1.90691 1.36904 1.42546 1.70890 1.21598 0.94326 1.02432 0.94226 0.85835 1.23830 0.95642 0.79892 1.01798 1.86835 1.19558 1.28899 1.86215 1.19557 0.83764 0.94957 0.95117 1.20192 0.92857 0.99473 1.03626 1.20844 0.93708 0.97142 0.98606 1.21007 0.99765 0.94184 1.01930 1.20331 0.91120 0.99522 0.96012 1.20174 0.94821 0.96360 1.03074 1.22713 0.88252 0.89434 0.97164 0.93559 0.93464 0.93579 0.89216 0.76179 0.87041 0.89216 0.85577 0.85288 0.85490 0.85702 0.94719 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 11.38 55.49 0.63 -26.09 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.23 -6.16 10.70 -15.06 -0.16 -6.32 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -14.95 3.70 -178.07 -0.66 -15.61 16 10 C 0.11 2.14 8.69 -2.97 -0.03 2.11 16 11 C 0.09 1.72 4.43 -70.12 -0.31 1.41 16 12 N -0.69 -11.68 5.29 -55.32 -0.29 -11.98 16 13 C 0.52 8.86 7.08 -10.98 -0.08 8.78 16 14 O -0.53 -11.04 15.74 5.56 0.09 -10.96 16 15 C -0.10 -1.38 3.52 -91.56 -0.32 -1.70 16 16 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 17 C 0.06 0.71 7.54 38.06 0.29 0.99 16 18 O -0.30 -4.18 11.10 -20.18 -0.22 -4.41 16 19 C 0.11 1.55 7.04 -38.95 -0.27 1.28 16 20 C -0.14 -1.69 10.06 -39.30 -0.40 -2.08 16 21 C -0.08 -0.88 10.02 -39.67 -0.40 -1.28 16 22 C -0.15 -1.66 10.07 -39.52 -0.40 -2.05 16 23 C -0.05 -0.67 10.03 -39.72 -0.40 -1.07 16 24 C -0.14 -2.02 4.93 -104.10 -0.51 -2.53 16 25 C 0.15 3.54 7.32 -2.96 -0.02 3.52 16 26 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 1.71 7.46 -51.93 -0.39 1.32 16 30 H 0.40 6.26 8.75 -40.82 -0.36 5.90 16 31 H 0.11 1.12 7.85 -51.93 -0.41 0.71 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 2.03 7.15 -51.93 -0.37 1.65 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -33.50 325.33 -8.56 -42.06 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -4.88 Total: 4.71 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -3.11 Total: 0.83 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.32 Total: -53.68 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.14 Total: -15.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.50 -8.56 -42.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031477498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.049 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds