Wall clock time and date at job start Tue Mar 31 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00398 * 2 1 4 4 H 1.48493 * 109.47048 * 239.99751 * 3 2 1 5 5 H 1.48496 * 109.46668 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47103 * 119.99727 * 3 2 1 7 7 C 1.38816 * 119.99586 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99821 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.48906 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11463 * 155.36127 * 10 9 7 12 12 N 1.46504 * 113.74344 * 269.26153 * 11 10 9 13 13 C 1.34778 * 119.99807 * 204.99729 * 12 11 10 14 14 O 1.21276 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99977 * 179.97438 * 13 12 11 16 16 H 1.09006 * 110.82757 * 56.29251 * 15 13 12 17 17 C 1.54706 * 110.93952 * 292.54773 * 15 13 12 18 18 O 1.43772 * 102.78524 * 267.12379 * 17 15 13 19 19 C 1.36137 * 109.23441 * 332.25793 * 18 17 15 20 20 C 1.39288 * 129.88040 * 198.39265 * 19 18 17 21 21 C 1.37933 * 120.23949 * 181.01835 * 20 19 18 22 22 C 1.38289 * 120.35004 * 359.97438 * 21 20 19 23 23 C 1.38352 * 119.76785 * 359.80595 * 22 21 20 24 24 C 1.37744 * 119.97621 * 0.03969 * 23 22 21 25 25 C 1.47573 * 134.49418 * 0.02562 * 9 7 2 26 26 H 0.97001 * 119.99179 * 0.02562 * 1 2 3 27 27 H 1.08996 * 113.77114 * 41.06470 * 10 9 7 28 28 H 1.09000 * 113.77347 * 269.66390 * 10 9 7 29 29 H 1.09004 * 113.74083 * 137.95224 * 11 10 9 30 30 H 0.96993 * 120.00029 * 25.00079 * 12 11 10 31 31 H 1.09000 * 110.75232 * 25.44645 * 17 15 13 32 32 H 1.09004 * 110.74831 * 148.80355 * 17 15 13 33 33 H 1.07995 * 119.88507 * 0.99180 * 20 19 18 34 34 H 1.07994 * 119.82634 * 179.97438 * 21 20 19 35 35 H 1.07997 * 120.11862 * 179.83713 * 22 21 20 36 36 H 1.07994 * 120.01166 * 180.02562 * 23 22 21 37 37 H 1.09003 * 113.77162 * 90.33937 * 25 9 7 38 38 H 1.09004 * 113.77283 * 318.93909 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.7200 -3.8102 0.0005 11 6 0.3468 -4.0829 0.6409 12 7 0.3629 -4.0548 2.1055 13 6 -0.5659 -4.7386 2.8029 14 8 -1.4147 -5.3774 2.2178 15 6 -0.5490 -4.7102 4.3095 16 1 -0.5970 -3.6856 4.6784 17 6 0.6982 -5.4398 4.8623 18 8 0.2168 -6.7782 5.0723 19 6 -1.1221 -6.7402 5.3160 20 6 -1.9510 -7.6952 5.8999 21 6 -3.3026 -7.4539 6.0327 22 6 -3.8468 -6.2628 5.5884 23 6 -3.0294 -5.3071 5.0115 24 6 -1.6789 -5.5447 4.8808 25 6 -0.1033 -2.7573 -0.0004 26 1 -0.4849 0.8401 -0.0004 27 1 2.5622 -4.0325 0.6558 28 1 1.8318 -4.2351 -0.9970 29 1 -0.1594 -4.9597 0.2369 30 1 1.0420 -3.5442 2.5734 31 1 1.5067 -5.4306 4.1313 32 1 1.0213 -4.9937 5.8029 33 1 -1.5342 -8.6281 6.2495 34 1 -3.9393 -8.1992 6.4860 35 1 -4.9059 -6.0789 5.6918 36 1 -3.4501 -4.3753 4.6636 37 1 -0.5265 -2.8734 -0.9982 38 1 -0.7175 -2.1387 0.6541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031477498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:04 Heat of formation + Delta-G solvation = 2.245806 kcal Electronic energy + Delta-G solvation = -22449.955926 eV Core-core repulsion = 19066.094396 eV Total energy + Delta-G solvation = -3383.861529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.48001 -40.67558 -39.04317 -38.31954 -35.01274 -34.09022 -33.37796 -31.02884 -30.36524 -29.34750 -26.60704 -25.73622 -24.69389 -23.56007 -22.97178 -21.44700 -20.97457 -18.89298 -18.70731 -17.91052 -17.61706 -17.33567 -16.93860 -16.46532 -16.38997 -15.77975 -15.53503 -15.21089 -14.86032 -14.60758 -14.40841 -14.27893 -13.89938 -13.52909 -13.39978 -13.20275 -12.75551 -12.74670 -12.62098 -12.46123 -12.16933 -12.10567 -11.76264 -11.73333 -11.41227 -11.05564 -10.85048 -9.98560 -9.86427 -9.13975 -8.94627 -7.88916 -5.23916 0.30557 0.43753 1.47100 1.49723 1.50056 1.56062 2.10662 2.29552 2.47654 2.82266 3.18450 3.26795 3.40958 3.51382 3.77729 3.84281 3.89596 4.19858 4.23838 4.37204 4.44966 4.47615 4.52503 4.56567 4.62050 4.70302 4.78263 4.87687 5.05082 5.10192 5.24914 5.37134 5.46179 5.48367 5.56225 5.65838 5.69409 5.91152 6.19851 6.57058 6.90482 7.20365 7.61376 8.54955 9.26959 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.027204 B = 0.003681 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.994671 B = 7603.963118 C = 7765.117698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.281 1.281 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.233 4.233 8 H 0.089 0.911 9 N -0.632 5.632 10 C 0.119 3.881 11 C 0.112 3.888 12 N -0.685 5.685 13 C 0.523 3.477 14 O -0.575 6.575 15 C -0.100 4.100 16 H 0.142 0.858 17 C 0.066 3.934 18 O -0.318 6.318 19 C 0.089 3.911 20 C -0.151 4.151 21 C -0.079 4.079 22 C -0.152 4.152 23 C -0.074 4.074 24 C -0.169 4.169 25 C 0.145 3.855 26 H 0.246 0.754 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.412 0.588 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.123 0.877 37 H 0.020 0.980 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -13.210 14.670 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.197 1.197 7 C -0.361 4.361 8 H 0.107 0.893 9 N -0.360 5.360 10 C -0.006 4.006 11 C 0.005 3.995 12 N -0.335 5.335 13 C 0.309 3.691 14 O -0.454 6.454 15 C -0.122 4.122 16 H 0.159 0.841 17 C -0.009 4.009 18 O -0.233 6.233 19 C 0.044 3.956 20 C -0.170 4.170 21 C -0.097 4.097 22 C -0.170 4.170 23 C -0.092 4.092 24 C -0.170 4.170 25 C 0.018 3.982 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.248 0.752 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.162 0.838 34 H 0.182 0.818 35 H 0.170 0.830 36 H 0.141 0.859 37 H 0.038 0.962 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.188 -13.515 14.236 19.751 hybrid contribution 0.448 1.800 -0.625 1.957 sum -1.740 -11.715 13.611 18.043 Atomic orbital electron populations 1.70034 1.06585 1.25524 1.58128 1.25607 0.96371 1.00845 1.02988 0.85169 0.77064 0.78841 0.78330 1.20686 1.22621 1.19692 1.19409 0.90927 0.83083 1.42687 0.89304 1.46377 1.02747 1.00563 1.86266 1.23062 0.95201 0.83787 0.98588 1.22505 0.98547 0.97732 0.80676 1.45431 1.32060 1.49930 1.06091 1.20647 0.80523 0.78071 0.89816 1.90664 1.38368 1.44225 1.72134 1.21622 0.95683 1.03842 0.91014 0.84050 1.24057 0.94575 0.78769 1.03511 1.86790 1.19717 1.30283 1.86500 1.19881 0.83972 0.95563 0.96219 1.20605 0.93429 0.99792 1.03135 1.21290 0.93547 0.97456 0.97418 1.21383 1.00878 0.93893 1.00825 1.20578 0.91331 1.00327 0.96951 1.20380 0.95418 0.97014 1.04165 1.22622 0.87815 0.91480 0.96237 0.94481 0.90869 0.92001 0.88832 0.75166 0.86107 0.86022 0.83786 0.81759 0.82988 0.85903 0.96228 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.96 11.38 21.65 0.25 -56.71 16 2 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 3 Si 0.98 44.42 29.55 68.60 2.03 46.44 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.23 -12.42 10.70 84.03 0.90 -11.53 16 8 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -30.77 3.70 -717.30 -2.65 -33.42 16 10 C 0.12 4.41 8.69 86.48 0.75 5.16 16 11 C 0.11 4.26 4.43 46.76 0.21 4.47 16 12 N -0.69 -22.76 5.29 -447.32 -2.37 -25.13 16 13 C 0.52 17.62 7.08 87.66 0.62 18.24 16 14 O -0.57 -24.10 15.74 -3.02 -0.05 -24.15 16 15 C -0.10 -2.58 3.52 -11.41 -0.04 -2.62 16 16 H 0.14 3.02 8.14 -2.38 -0.02 3.00 16 17 C 0.07 1.34 7.54 72.56 0.55 1.89 16 18 O -0.32 -8.47 11.10 -95.11 -1.06 -9.53 16 19 C 0.09 2.39 7.04 22.68 0.16 2.55 16 20 C -0.15 -3.31 10.06 22.45 0.23 -3.08 16 21 C -0.08 -1.45 10.02 22.21 0.22 -1.22 16 22 C -0.15 -3.08 10.07 22.31 0.22 -2.85 16 23 C -0.07 -1.89 10.03 22.18 0.22 -1.67 16 24 C -0.17 -4.67 4.93 -19.53 -0.10 -4.77 16 25 C 0.15 7.01 7.32 86.50 0.63 7.64 16 26 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.15 16 29 H 0.09 3.54 7.46 -2.38 -0.02 3.52 16 30 H 0.41 12.27 8.75 -92.71 -0.81 11.46 16 31 H 0.12 2.18 7.85 -2.39 -0.02 2.16 16 32 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.04 2.33 7.15 -2.39 -0.02 2.31 16 Total: -1.00 -73.62 325.33 1.47 -72.15 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.27 Total: 21.27 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 5.04 Total: 9.07 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -4.77 Total: -115.26 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.10 Total: -33.68 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.62 1.47 -72.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031477498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.397 kcal (2) G-P(sol) polarization free energy of solvation -73.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds