Wall clock time and date at job start Tue Mar 31 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00448 * 2 1 4 4 H 1.48493 * 109.47220 * 270.00251 * 3 2 1 5 5 H 1.48500 * 109.46755 * 30.00133 * 3 2 1 6 6 H 1.48500 * 109.47042 * 150.00180 * 3 2 1 7 7 C 1.37884 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99678 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00178 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47144 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.46815 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99951 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99960 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00112 * 180.02562 * 13 12 11 16 16 H 1.09004 * 110.12854 * 318.40752 * 15 13 12 17 17 N 1.46736 * 110.09627 * 196.81984 * 15 13 12 18 18 C 1.34417 * 108.75057 * 240.79917 * 17 15 13 19 19 O 1.21555 * 124.85640 * 180.02562 * 18 17 15 20 20 C 1.47545 * 110.29089 * 359.97438 * 18 17 15 21 21 C 1.39626 * 132.34890 * 180.02562 * 20 18 17 22 22 C 1.37939 * 119.82799 * 180.25844 * 21 20 18 23 23 C 1.38388 * 120.32030 * 359.44039 * 22 21 20 24 24 C 1.38475 * 120.18777 * 0.55878 * 23 22 21 25 25 C 1.37586 * 119.95436 * 359.72455 * 24 23 22 26 26 H 0.96996 * 119.99526 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47145 * 60.00176 * 9 7 2 28 28 H 1.08997 * 109.47632 * 300.00106 * 9 7 2 29 29 H 1.09002 * 109.46875 * 60.00057 * 10 9 7 30 30 H 1.08997 * 109.46937 * 300.00578 * 10 9 7 31 31 H 1.08992 * 109.47335 * 60.00057 * 11 10 9 32 32 H 1.08998 * 109.46804 * 299.99831 * 11 10 9 33 33 H 0.97002 * 120.00823 * 359.97438 * 12 11 10 34 34 H 0.96996 * 125.62599 * 60.77087 * 17 15 13 35 35 H 1.08002 * 120.08234 * 359.97438 * 21 20 18 36 36 H 1.07991 * 119.83984 * 179.70156 * 22 21 20 37 37 H 1.07999 * 119.90716 * 180.28620 * 23 22 21 38 38 H 1.07995 * 120.02255 * 179.74434 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5514 -2.6368 -0.0009 12 7 6.0396 -4.0180 -0.0014 13 6 7.3648 -4.2643 -0.0010 14 8 8.1529 -3.3425 -0.0006 15 6 7.8670 -5.6852 -0.0021 16 1 7.2700 -6.2946 0.6764 17 7 9.2785 -5.7213 0.3974 18 6 9.9996 -6.2416 -0.6106 19 8 11.2039 -6.4058 -0.5907 20 6 9.1203 -6.5861 -1.7442 21 6 9.3773 -7.1429 -2.9985 22 6 8.3386 -7.3546 -3.8811 23 6 7.0417 -7.0286 -3.5249 24 6 6.7789 -6.4761 -2.2826 25 6 7.8085 -6.2554 -1.3971 26 1 -0.4849 0.8401 0.0004 27 1 3.8752 -0.6806 0.8889 28 1 3.8746 -0.6802 -0.8911 29 1 3.6577 -3.1507 -0.8908 30 1 3.6584 -3.1503 0.8892 31 1 5.9148 -2.1229 0.8889 32 1 5.9147 -2.1230 -0.8910 33 1 5.4093 -4.7553 -0.0014 34 1 9.6328 -5.4191 1.2483 35 1 10.3875 -7.4028 -3.2788 36 1 8.5378 -7.7808 -4.8532 37 1 6.2329 -7.2015 -4.2193 38 1 5.7663 -6.2188 -2.0090 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182426043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:35 Heat of formation + Delta-G solvation = -67.235226 kcal Electronic energy + Delta-G solvation = -21653.351255 eV Core-core repulsion = 18266.476802 eV Total energy + Delta-G solvation = -3386.874453 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.60914 -40.41255 -39.15493 -37.27863 -36.69999 -35.18843 -33.40910 -32.17038 -31.72949 -29.71820 -27.98263 -25.01662 -24.65770 -23.04997 -22.26049 -21.80980 -21.18310 -19.06063 -18.64027 -18.39134 -17.93937 -17.32747 -16.86222 -16.55111 -16.23936 -16.11967 -15.59135 -15.46360 -15.08790 -14.84171 -14.75279 -14.67133 -14.11470 -13.79496 -13.59372 -13.58332 -12.86774 -12.73099 -12.68405 -12.19387 -11.95989 -11.78552 -11.56957 -11.51117 -11.30282 -11.19016 -10.74428 -10.57727 -10.17187 -10.02846 -9.83489 -8.27774 -6.30891 -0.34696 0.23344 1.35212 1.37484 1.39860 1.50372 1.54285 1.86644 2.25135 2.37257 2.76599 2.94415 3.08598 3.17877 3.57062 3.82789 4.05224 4.12923 4.15270 4.23742 4.34716 4.45616 4.52880 4.65712 4.90876 4.91338 4.92930 5.06733 5.07513 5.30403 5.32677 5.41131 5.51530 5.53766 5.59388 5.67486 5.73795 5.83670 6.29591 6.42862 6.78004 6.94368 7.09149 7.34160 8.88474 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.003108 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.273310 B = 9007.681630 C = 9659.966048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.249 1.249 7 C -0.527 4.527 8 H 0.042 0.958 9 C -0.014 4.014 10 C -0.099 4.099 11 C 0.126 3.874 12 N -0.701 5.701 13 C 0.509 3.491 14 O -0.573 6.573 15 C 0.161 3.839 16 H 0.171 0.829 17 N -0.695 5.695 18 C 0.557 3.443 19 O -0.570 6.570 20 C -0.183 4.183 21 C -0.060 4.060 22 C -0.117 4.117 23 C -0.078 4.078 24 C -0.095 4.095 25 C -0.085 4.085 26 H 0.265 0.735 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.420 0.580 34 H 0.433 0.567 35 H 0.134 0.866 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.239 -18.251 -5.152 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.565 4.565 8 H 0.060 0.940 9 C -0.052 4.052 10 C -0.137 4.137 11 C 0.003 3.997 12 N -0.353 5.353 13 C 0.293 3.707 14 O -0.452 6.452 15 C 0.052 3.948 16 H 0.188 0.812 17 N -0.350 5.350 18 C 0.346 3.654 19 O -0.451 6.451 20 C -0.186 4.186 21 C -0.079 4.079 22 C -0.134 4.134 23 C -0.096 4.096 24 C -0.113 4.113 25 C -0.086 4.086 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.258 0.742 34 H 0.276 0.724 35 H 0.152 0.848 36 H 0.181 0.819 37 H 0.186 0.814 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 15.246 -17.580 -5.170 23.838 hybrid contribution -0.045 0.989 0.629 1.173 sum 15.202 -16.591 -4.541 22.956 Atomic orbital electron populations 1.70049 1.08169 1.28033 1.52869 1.25942 0.95514 1.03266 0.94423 0.85760 0.79537 0.78888 0.79092 1.19370 1.21305 1.17221 1.21475 0.91892 0.93262 1.49859 0.93995 1.19483 0.94064 0.95024 0.96675 1.21481 0.91603 0.97916 1.02716 1.21347 0.94636 0.82292 1.01469 1.45850 1.06245 1.09773 1.73420 1.20860 0.82853 0.90895 0.76060 1.90749 1.56506 1.47078 1.50893 1.20124 0.84544 0.93520 0.96610 0.81196 1.45529 1.07438 1.63498 1.18508 1.18695 0.86349 0.76411 0.83911 1.90769 1.14974 1.57109 1.82246 1.20421 0.94802 1.06653 0.96736 1.21115 1.01158 0.94920 0.90675 1.21570 0.92055 0.99417 1.00406 1.21847 0.97942 0.94163 0.95653 1.20769 0.99062 0.98556 0.92954 1.20111 0.94611 0.99597 0.94326 0.92590 0.96333 0.96381 0.91025 0.91257 0.92343 0.92483 0.74192 0.72426 0.84770 0.81855 0.81356 0.82231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.81 13.96 21.45 0.30 -57.51 16 2 C 0.01 0.31 5.47 84.66 0.46 0.77 16 3 Si 0.94 43.15 27.47 68.60 1.88 45.04 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 7 C -0.53 -28.43 9.66 25.60 0.25 -28.18 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.49 16 10 C -0.10 -3.11 5.27 30.60 0.16 -2.95 16 11 C 0.13 3.43 5.67 86.38 0.49 3.92 16 12 N -0.70 -13.78 5.56 -463.08 -2.57 -16.36 16 13 C 0.51 11.67 7.13 87.66 0.62 12.30 16 14 O -0.57 -19.11 16.56 -3.04 -0.05 -19.16 16 15 C 0.16 2.67 3.96 43.49 0.17 2.84 16 16 H 0.17 1.31 8.14 -2.39 -0.02 1.29 16 17 N -0.69 -14.83 5.61 -452.71 -2.54 -17.37 16 18 C 0.56 15.02 8.34 86.75 0.72 15.75 16 19 O -0.57 -19.60 18.04 -3.89 -0.07 -19.67 16 20 C -0.18 -3.96 6.26 -20.14 -0.13 -4.08 16 21 C -0.06 -1.03 10.10 22.53 0.23 -0.80 16 22 C -0.12 -1.28 10.02 22.23 0.22 -1.05 16 23 C -0.08 -0.73 10.05 22.36 0.22 -0.51 16 24 C -0.10 -1.10 10.03 22.17 0.22 -0.88 16 25 C -0.08 -1.42 5.65 -19.63 -0.11 -1.53 16 26 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 27 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 28 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.42 5.11 8.47 -92.71 -0.79 4.33 16 34 H 0.43 8.23 8.96 -92.71 -0.83 7.40 16 35 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.16 0.80 8.06 -2.92 -0.02 0.78 16 37 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -80.12 331.06 0.04 -80.08 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -0.57 Total: 9.85 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 3.66 Total: -4.89 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -4.81 Total: -91.24 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.12 Total: -38.82 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.04 kcal Total: -80.12 0.04 -80.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182426043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.843 kcal (2) G-P(sol) polarization free energy of solvation -80.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds