Wall clock time and date at job start Tue Mar 31 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46908 * 2 1 4 4 H 1.08998 * 110.43516 * 307.53175 * 3 2 1 5 5 O 1.45758 * 110.48285 * 70.20980 * 3 2 1 6 6 C 1.34307 * 108.21565 * 118.68086 * 5 3 2 7 7 C 1.50702 * 123.62376 * 180.26705 * 6 5 3 8 8 C 1.34461 * 112.74630 * 359.97438 * 6 5 3 9 9 O 1.36173 * 125.04276 * 180.02562 * 8 6 5 10 10 C 1.35578 * 117.99999 * 113.97641 * 9 8 6 11 11 C 1.39394 * 119.82468 * 354.53628 * 10 9 8 12 12 C 1.36395 * 120.17417 * 179.75696 * 11 10 9 13 13 C 1.40849 * 119.82166 * 0.51755 * 12 11 10 14 14 C 1.41177 * 120.17525 * 179.76098 * 13 12 11 15 15 H 1.08002 * 119.99781 * 26.03563 * 14 13 12 16 16 C 1.39868 * 119.99874 * 206.04027 * 14 13 12 17 17 N 1.30893 * 120.00444 * 15.64644 * 16 14 13 18 18 Si 1.86807 * 119.99514 * 195.65070 * 16 14 13 19 19 H 1.48492 * 109.47269 * 59.99928 * 18 16 14 20 20 H 1.48506 * 109.46702 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46980 * 299.99629 * 18 16 14 22 22 C 1.40861 * 119.65631 * 359.73775 * 13 12 11 23 23 C 1.36390 * 119.81435 * 0.02562 * 22 13 12 24 24 C 1.41282 * 109.91415 * 0.02562 * 8 6 5 25 25 O 1.21485 * 127.54460 * 180.02562 * 24 8 6 26 26 H 1.09001 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47619 * 300.00053 * 1 2 3 28 28 H 1.09001 * 109.47253 * 59.99871 * 1 2 3 29 29 H 1.08997 * 109.46909 * 239.99716 * 2 1 3 30 30 H 1.08996 * 109.46847 * 119.99976 * 2 1 3 31 31 H 1.09003 * 109.46949 * 264.43741 * 7 6 5 32 32 H 1.08998 * 109.47560 * 24.43732 * 7 6 5 33 33 H 1.09001 * 109.47015 * 144.43781 * 7 6 5 34 34 H 1.07995 * 119.90982 * 0.02562 * 11 10 9 35 35 H 1.08006 * 120.08676 * 180.23073 * 12 11 10 36 36 H 0.96998 * 119.99850 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.09484 * 179.97438 * 22 13 12 38 38 H 1.08005 * 119.91189 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0087 -0.8100 5 8 1.7741 2.0775 1.2848 6 6 2.9500 2.4259 1.8322 7 6 3.0784 3.1056 3.1711 8 6 4.0006 2.0975 1.0600 9 8 5.3048 2.3340 1.3723 10 6 6.1102 1.2658 1.5926 11 6 5.5694 -0.0188 1.6083 12 6 6.3739 -1.0988 1.8243 13 6 7.7528 -0.9125 2.0427 14 6 8.5916 -2.0246 2.2720 15 1 8.3192 -2.9954 1.8848 16 6 9.7753 -1.8693 3.0007 17 7 9.9625 -0.7945 3.7240 18 14 11.0892 -3.1959 2.9417 19 1 11.5506 -3.3737 1.5415 20 1 12.2373 -2.7936 3.7934 21 1 10.5245 -4.4746 3.4429 22 6 8.2908 0.3893 2.0305 23 6 7.4738 1.4586 1.8083 24 6 3.5507 1.4708 -0.1236 25 8 4.2265 1.0466 -1.0396 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1511 4.1835 3.0259 32 1 2.2025 2.8792 3.7791 33 1 3.9745 2.7458 3.6767 34 1 4.5112 -0.1596 1.4447 35 1 5.9539 -2.0938 1.8325 36 1 10.7836 -0.6868 4.2290 37 1 9.3470 0.5404 2.1976 38 1 7.8847 2.4574 1.7983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225268166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:29 Heat of formation + Delta-G solvation = -63.332604 kcal Electronic energy + Delta-G solvation = -22567.165452 eV Core-core repulsion = 19148.167478 eV Total energy + Delta-G solvation = -3418.997973 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.81172 -38.93184 -37.87088 -36.59282 -34.17014 -33.38242 -31.74521 -30.06140 -29.46479 -29.03731 -26.55288 -24.95125 -22.60940 -21.93247 -21.12783 -20.57252 -19.86637 -17.81198 -17.35108 -16.45128 -16.04722 -15.90100 -15.20280 -15.02493 -14.39215 -14.08684 -14.03022 -13.76783 -13.55657 -13.30495 -12.93537 -12.75739 -12.53379 -12.50452 -12.22920 -12.18379 -12.10524 -11.76304 -11.30126 -11.22272 -11.10938 -11.03790 -10.78906 -10.40150 -9.87150 -9.47040 -9.33149 -9.03100 -8.30718 -7.63842 -7.00636 -6.71781 -4.27153 0.89696 2.62507 2.80781 2.84866 2.97818 3.08251 3.11190 3.22239 3.68232 3.95529 4.35056 4.44492 4.59858 4.63440 4.72745 5.02969 5.13779 5.24728 5.39984 5.41964 5.46223 5.56898 5.67782 5.72031 5.80992 5.97943 6.03992 6.07883 6.21165 6.62726 6.76398 6.98058 7.09635 7.18559 7.40033 7.53871 7.63310 7.79042 7.99955 8.20941 8.49363 8.66416 8.89520 8.98135 10.22784 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.004039 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.542982 B = 6930.978477 C = 7424.112786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.014 3.986 4 H 0.135 0.865 5 O -0.269 6.269 6 C 0.132 3.868 7 C -0.096 4.096 8 C -0.143 4.143 9 O -0.229 6.229 10 C -0.022 4.022 11 C -0.143 4.143 12 C -0.198 4.198 13 C 0.094 3.906 14 C -0.462 4.462 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.800 5.800 18 Si 0.909 3.091 19 H -0.264 1.264 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.134 4.134 23 C -0.111 4.111 24 C 0.353 3.647 25 O -0.419 6.419 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.280 0.720 37 H 0.128 0.872 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.346 5.027 -1.826 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.043 4.043 4 H 0.153 0.847 5 O -0.180 6.180 6 C 0.082 3.918 7 C -0.152 4.152 8 C -0.189 4.189 9 O -0.142 6.142 10 C -0.063 4.063 11 C -0.162 4.162 12 C -0.217 4.217 13 C 0.091 3.909 14 C -0.492 4.492 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.427 5.427 18 Si 0.734 3.266 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.153 4.153 23 C -0.130 4.130 24 C 0.232 3.768 25 O -0.295 6.295 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.991 5.103 -2.044 15.032 hybrid contribution 0.571 -0.733 -0.066 0.932 sum -13.419 4.370 -2.111 14.270 Atomic orbital electron populations 1.21752 0.94039 1.02362 1.02427 1.21644 0.97487 0.91851 1.04633 1.24083 0.97429 0.97182 0.85575 0.84740 1.87147 1.26539 1.71205 1.33132 1.22410 0.84648 0.91613 0.93121 1.20697 1.04800 1.00511 0.89181 1.19543 0.86681 1.14953 0.97727 1.84269 1.14199 1.31275 1.84482 1.18818 0.90238 0.84917 1.12345 1.20267 0.97296 0.92606 1.06057 1.20560 0.93790 0.96241 1.11150 1.17597 0.90704 0.93183 0.89384 1.19439 1.03635 0.96059 1.30073 0.90564 1.25870 0.98709 0.96495 0.93099 1.69815 1.25590 1.26835 1.20432 0.86356 0.79740 0.81248 0.79285 1.18874 1.20354 1.19094 1.20959 0.99363 0.91504 1.03511 1.19786 0.89720 0.98653 1.04860 1.21772 0.90412 0.77574 0.87062 1.90670 1.63919 1.39019 1.35850 0.91925 0.91864 0.92404 0.88993 0.90263 0.88728 0.89870 0.88100 0.89796 0.88741 0.90865 0.85459 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.86 37.16 0.37 -0.87 16 2 C -0.12 -1.31 5.71 -26.73 -0.15 -1.46 16 3 C 0.01 0.17 3.74 -27.44 -0.10 0.07 16 4 H 0.14 1.33 8.14 -51.93 -0.42 0.90 16 5 O -0.27 -3.39 10.73 -14.77 -0.16 -3.55 16 6 C 0.13 1.88 7.13 -35.64 -0.25 1.62 16 7 C -0.10 -1.05 10.20 36.01 0.37 -0.68 16 8 C -0.14 -2.58 4.92 -39.76 -0.20 -2.78 16 9 O -0.23 -4.96 9.89 -3.60 -0.04 -5.00 16 10 C -0.02 -0.53 6.66 -38.72 -0.26 -0.78 16 11 C -0.14 -3.46 8.71 -39.82 -0.35 -3.81 16 12 C -0.20 -5.07 9.74 -39.26 -0.38 -5.45 16 13 C 0.09 2.56 5.56 -106.80 -0.59 1.96 16 14 C -0.46 -12.44 9.04 -37.86 -0.34 -12.79 16 15 H 0.08 1.97 7.89 -52.49 -0.41 1.56 16 16 C 0.07 1.90 5.17 -17.34 -0.09 1.81 16 17 N -0.80 -20.75 10.92 55.54 0.61 -20.14 16 18 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 19 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 C -0.13 -3.56 8.63 -39.26 -0.34 -3.90 16 23 C -0.11 -2.76 9.92 -39.82 -0.40 -3.16 16 24 C 0.35 6.20 5.69 -32.71 -0.19 6.01 16 25 O -0.42 -8.80 17.91 5.27 0.09 -8.70 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.53 8.04 -51.93 -0.42 0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.08 1.86 6.09 -52.49 -0.32 1.54 16 35 H 0.09 2.27 8.06 -52.48 -0.42 1.85 16 36 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 37 H 0.13 3.43 6.18 -52.49 -0.32 3.11 16 38 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -30.94 328.74 -7.31 -38.25 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.84 Total: 4.56 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.90 Total: -24.20 kcal Atomic # 7 Polarization: -20.75 SS G_CDS: 0.61 Total: -20.14 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.10 Total: -17.25 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.94 -7.31 -38.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.085 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds