Wall clock time and date at job start Tue Mar 31 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46908 * 2 1 4 4 H 1.08998 * 110.43516 * 307.53175 * 3 2 1 5 5 O 1.45758 * 110.48285 * 70.20980 * 3 2 1 6 6 C 1.34307 * 108.21565 * 118.68086 * 5 3 2 7 7 C 1.50702 * 123.62376 * 180.26705 * 6 5 3 8 8 C 1.34461 * 112.74630 * 359.97438 * 6 5 3 9 9 O 1.36173 * 125.04276 * 180.02562 * 8 6 5 10 10 C 1.35578 * 117.99999 * 113.97641 * 9 8 6 11 11 C 1.39394 * 119.82468 * 354.53628 * 10 9 8 12 12 C 1.36395 * 120.17417 * 179.75696 * 11 10 9 13 13 C 1.40849 * 119.82166 * 0.51755 * 12 11 10 14 14 C 1.41177 * 120.17525 * 179.76098 * 13 12 11 15 15 H 1.08002 * 119.99781 * 26.03563 * 14 13 12 16 16 C 1.39868 * 119.99874 * 206.04027 * 14 13 12 17 17 N 1.30893 * 120.00444 * 15.64644 * 16 14 13 18 18 Si 1.86807 * 119.99514 * 195.65070 * 16 14 13 19 19 H 1.48492 * 109.47269 * 59.99928 * 18 16 14 20 20 H 1.48506 * 109.46702 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46980 * 299.99629 * 18 16 14 22 22 C 1.40861 * 119.65631 * 359.73775 * 13 12 11 23 23 C 1.36390 * 119.81435 * 0.02562 * 22 13 12 24 24 C 1.41282 * 109.91415 * 0.02562 * 8 6 5 25 25 O 1.21485 * 127.54460 * 180.02562 * 24 8 6 26 26 H 1.09001 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47619 * 300.00053 * 1 2 3 28 28 H 1.09001 * 109.47253 * 59.99871 * 1 2 3 29 29 H 1.08997 * 109.46909 * 239.99716 * 2 1 3 30 30 H 1.08996 * 109.46847 * 119.99976 * 2 1 3 31 31 H 1.09003 * 109.46949 * 264.43741 * 7 6 5 32 32 H 1.08998 * 109.47560 * 24.43732 * 7 6 5 33 33 H 1.09001 * 109.47015 * 144.43781 * 7 6 5 34 34 H 1.07995 * 119.90982 * 0.02562 * 11 10 9 35 35 H 1.08006 * 120.08676 * 180.23073 * 12 11 10 36 36 H 0.96998 * 119.99850 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.09484 * 179.97438 * 22 13 12 38 38 H 1.08005 * 119.91189 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0087 -0.8100 5 8 1.7741 2.0775 1.2848 6 6 2.9500 2.4259 1.8322 7 6 3.0784 3.1056 3.1711 8 6 4.0006 2.0975 1.0600 9 8 5.3048 2.3340 1.3723 10 6 6.1102 1.2658 1.5926 11 6 5.5694 -0.0188 1.6083 12 6 6.3739 -1.0988 1.8243 13 6 7.7528 -0.9125 2.0427 14 6 8.5916 -2.0246 2.2720 15 1 8.3192 -2.9954 1.8848 16 6 9.7753 -1.8693 3.0007 17 7 9.9625 -0.7945 3.7240 18 14 11.0892 -3.1959 2.9417 19 1 11.5506 -3.3737 1.5415 20 1 12.2373 -2.7936 3.7934 21 1 10.5245 -4.4746 3.4429 22 6 8.2908 0.3893 2.0305 23 6 7.4738 1.4586 1.8083 24 6 3.5507 1.4708 -0.1236 25 8 4.2265 1.0466 -1.0396 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1511 4.1835 3.0259 32 1 2.2025 2.8792 3.7791 33 1 3.9745 2.7458 3.6767 34 1 4.5112 -0.1596 1.4447 35 1 5.9539 -2.0938 1.8325 36 1 10.7836 -0.6868 4.2290 37 1 9.3470 0.5404 2.1976 38 1 7.8847 2.4574 1.7983 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225268166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:29 Heat of formation + Delta-G solvation = -81.109186 kcal Electronic energy + Delta-G solvation = -22567.936302 eV Core-core repulsion = 19148.167478 eV Total energy + Delta-G solvation = -3419.768824 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.06788 -40.57681 -39.27981 -38.39620 -35.38706 -35.01068 -32.99235 -31.67239 -31.02955 -30.82693 -27.61126 -26.78338 -23.68318 -23.53253 -22.87670 -21.95924 -21.35592 -19.33807 -19.26617 -17.70189 -17.41517 -17.25136 -16.97597 -16.40319 -15.83380 -15.63714 -15.29916 -15.14625 -14.84504 -14.69254 -14.40853 -14.27798 -14.09354 -13.86353 -13.61675 -13.40351 -13.21104 -13.01219 -12.97771 -12.79832 -12.48528 -12.27182 -12.12297 -11.99574 -11.72773 -11.37966 -11.03219 -10.61549 -9.72126 -9.61743 -8.91686 -8.61517 -6.28271 -0.34533 0.87644 0.96832 1.34598 1.39009 1.50247 1.53793 1.67535 2.21880 2.43339 2.69268 2.98840 3.35740 3.58560 3.64121 3.75101 4.09213 4.16113 4.19264 4.25845 4.32565 4.39278 4.52677 4.59318 4.69062 4.81275 5.00193 5.01676 5.04501 5.09371 5.16224 5.24092 5.33906 5.45303 5.54855 5.62355 5.82251 5.99785 6.14964 6.26304 6.55088 6.81105 6.90611 7.06605 8.35172 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.004039 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.542982 B = 6930.978477 C = 7424.112786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.025 3.975 4 H 0.172 0.828 5 O -0.249 6.249 6 C 0.187 3.813 7 C -0.102 4.102 8 C -0.216 4.216 9 O -0.236 6.236 10 C -0.014 4.014 11 C -0.144 4.144 12 C -0.213 4.213 13 C 0.063 3.937 14 C -0.499 4.499 15 H 0.075 0.925 16 C 0.035 3.965 17 N -0.829 5.829 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.265 1.265 21 H -0.259 1.259 22 C -0.150 4.150 23 C -0.124 4.124 24 C 0.343 3.657 25 O -0.474 6.474 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.289 0.711 37 H 0.117 0.883 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.582 5.488 -1.229 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C -0.031 4.031 4 H 0.189 0.811 5 O -0.158 6.158 6 C 0.135 3.865 7 C -0.157 4.157 8 C -0.262 4.262 9 O -0.149 6.149 10 C -0.057 4.057 11 C -0.163 4.163 12 C -0.233 4.233 13 C 0.060 3.940 14 C -0.529 4.529 15 H 0.093 0.907 16 C -0.179 4.179 17 N -0.455 5.455 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.189 1.189 21 H -0.184 1.184 22 C -0.169 4.169 23 C -0.142 4.142 24 C 0.226 3.774 25 O -0.355 6.355 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.134 0.866 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.284 5.587 -1.435 17.275 hybrid contribution 1.005 -0.715 -0.187 1.247 sum -15.278 4.872 -1.622 16.118 Atomic orbital electron populations 1.21735 0.91371 1.03424 1.03390 1.21700 0.99616 0.90339 1.03955 1.24265 0.93899 0.98824 0.86077 0.81148 1.87194 1.25563 1.69949 1.33134 1.22919 0.83760 0.86920 0.92925 1.20975 1.05698 1.01709 0.87322 1.19971 0.85990 1.20255 1.00008 1.84270 1.15971 1.30037 1.84611 1.18974 0.90601 0.85876 1.10201 1.20406 0.98018 0.92380 1.05514 1.20759 0.93676 0.97157 1.11660 1.17933 0.91664 0.93830 0.90531 1.19683 1.05382 0.96030 1.31771 0.90700 1.26729 1.00235 0.98969 0.91944 1.69863 1.26491 1.28515 1.20659 0.85222 0.76757 0.78163 0.79364 1.18728 1.18939 1.18356 1.20915 0.99149 0.92037 1.04827 1.19985 0.90360 0.99051 1.04836 1.22302 0.92772 0.76290 0.86054 1.90640 1.65539 1.41838 1.37452 0.90948 0.91542 0.90738 0.89226 0.91638 0.85831 0.86477 0.89533 0.88177 0.88046 0.90011 0.86563 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.86 71.98 0.71 -1.15 16 2 C -0.12 -2.36 5.71 30.59 0.17 -2.18 16 3 C 0.03 0.57 3.74 30.13 0.11 0.68 16 4 H 0.17 2.72 8.14 -2.39 -0.02 2.70 16 5 O -0.25 -5.33 10.73 -75.77 -0.81 -6.14 16 6 C 0.19 4.78 7.13 24.82 0.18 4.96 16 7 C -0.10 -1.85 10.20 71.24 0.73 -1.13 16 8 C -0.22 -7.70 4.92 22.15 0.11 -7.59 16 9 O -0.24 -10.31 9.89 -35.29 -0.35 -10.65 16 10 C -0.01 -0.71 6.66 22.83 0.15 -0.56 16 11 C -0.14 -7.16 8.71 22.12 0.19 -6.96 16 12 C -0.21 -11.34 9.74 22.48 0.22 -11.12 16 13 C 0.06 3.57 5.56 -21.28 -0.12 3.45 16 14 C -0.50 -27.88 9.04 23.39 0.21 -27.67 16 15 H 0.07 4.03 7.89 -2.91 -0.02 4.01 16 16 C 0.04 1.83 5.17 85.23 0.44 2.27 16 17 N -0.83 -43.94 10.92 21.82 0.24 -43.71 16 18 Si 0.98 38.94 29.59 68.60 2.03 40.97 16 19 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 20 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 C -0.15 -8.33 8.63 22.48 0.19 -8.14 16 23 C -0.12 -6.34 9.92 22.12 0.22 -6.12 16 24 C 0.34 11.93 5.69 26.72 0.15 12.08 16 25 O -0.47 -20.57 17.91 -3.56 -0.06 -20.63 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.85 8.04 -2.39 -0.02 0.83 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.96 8.10 -2.39 -0.02 1.94 16 34 H 0.10 4.51 6.09 -2.91 -0.02 4.50 16 35 H 0.10 5.07 8.06 -2.91 -0.02 5.05 16 36 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 37 H 0.12 6.59 6.18 -2.91 -0.02 6.57 16 38 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 Total: -1.00 -71.04 328.74 5.79 -65.26 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 1.07 Total: 24.08 kcal Atomic # 6 Polarization: -52.85 SS G_CDS: 3.67 Total: -49.18 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.24 Total: -43.71 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.23 Total: -37.43 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -71.04 5.79 -65.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.851 kcal (2) G-P(sol) polarization free energy of solvation -71.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds