Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47352 * 2 1 4 4 H 1.09005 * 110.10400 * 53.37315 * 3 2 1 5 5 O 1.45503 * 110.12576 * 291.69280 * 3 2 1 6 6 C 1.34583 * 107.70332 * 240.83773 * 5 3 2 7 7 O 1.21509 * 125.04783 * 180.02562 * 6 5 3 8 8 C 1.46971 * 109.90390 * 359.97438 * 6 5 3 9 9 O 1.35926 * 125.31874 * 179.97438 * 8 6 5 10 10 C 1.35582 * 118.00120 * 294.00522 * 9 8 6 11 11 C 1.38513 * 120.27029 * 354.39074 * 10 9 8 12 12 C 1.38258 * 120.04718 * 179.76866 * 11 10 9 13 13 C 1.38848 * 120.60002 * 0.51315 * 12 11 10 14 14 C 1.36474 * 120.54983 * 359.74555 * 13 12 11 15 15 C 1.40732 * 119.93114 * 359.97438 * 14 13 12 16 16 C 1.41113 * 120.29382 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00350 * 154.71354 * 16 15 14 18 18 C 1.39930 * 120.00221 * 334.71119 * 16 15 14 19 19 N 1.30864 * 120.00011 * 343.24695 * 18 16 15 20 20 Si 1.86805 * 120.00283 * 163.23728 * 18 16 15 21 21 H 1.48504 * 109.46659 * 90.00537 * 20 18 16 22 22 H 1.48498 * 109.47242 * 210.00582 * 20 18 16 23 23 H 1.48503 * 109.46945 * 330.00903 * 20 18 16 24 24 C 1.33502 * 109.36607 * 0.02562 * 8 6 5 25 25 C 1.50701 * 126.54716 * 179.97438 * 24 8 6 26 26 H 1.09001 * 109.46566 * 300.00027 * 1 2 3 27 27 H 1.08998 * 109.47148 * 59.99808 * 1 2 3 28 28 H 1.08991 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47072 * 239.99865 * 2 1 3 30 30 H 1.08998 * 109.47148 * 120.00192 * 2 1 3 31 31 H 1.08006 * 119.97648 * 0.02562 * 11 10 9 32 32 H 1.08003 * 119.70665 * 180.25298 * 12 11 10 33 33 H 1.08004 * 119.72867 * 179.76026 * 13 12 11 34 34 H 1.07996 * 120.03447 * 180.02562 * 14 13 12 35 35 H 0.96997 * 120.00268 * 179.97438 * 19 18 16 36 36 H 1.08997 * 109.47315 * 265.60433 * 25 24 8 37 37 H 1.08998 * 109.46994 * 25.60601 * 25 24 8 38 38 H 1.08995 * 109.47242 * 145.60087 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5892 1.9993 0.8215 5 8 1.7309 2.0828 -1.2694 6 6 2.8952 2.4427 -1.8406 7 8 3.0022 3.0043 -2.9127 8 6 4.0179 2.0565 -0.9742 9 8 5.3319 2.2705 -1.2486 10 6 5.8782 1.6116 -2.3000 11 6 5.1403 0.6638 -2.9897 12 6 5.7003 -0.0020 -4.0643 13 6 7.0057 0.2619 -4.4568 14 6 7.7566 1.1871 -3.7914 15 6 7.2073 1.8823 -2.6981 16 6 7.9770 2.8402 -2.0042 17 1 7.4882 3.6401 -1.4679 18 6 9.3736 2.7536 -2.0109 19 7 9.9583 1.6376 -2.3649 20 14 10.4035 4.2310 -1.5148 21 1 10.6560 4.1895 -0.0520 22 1 11.6980 4.1986 -2.2417 23 1 9.6751 5.4792 -1.8562 24 6 3.5456 1.4618 0.1237 25 6 4.3590 0.9139 1.2680 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 4.1252 0.4476 -2.6905 32 1 5.1186 -0.7370 -4.6007 33 1 7.4305 -0.2692 -5.2959 34 1 8.7710 1.3861 -4.1041 35 1 10.9264 1.5776 -2.3699 36 1 4.5391 -0.1493 1.1094 37 1 5.3122 1.4399 1.3207 38 1 3.8142 1.0550 2.2013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = -72.514667 kcal Electronic energy + Delta-G solvation = -22935.810570 eV Core-core repulsion = 19516.414432 eV Total energy + Delta-G solvation = -3419.396138 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.53682 -38.94785 -37.43540 -36.55774 -34.22401 -33.68127 -32.83368 -29.83186 -28.86367 -28.02487 -26.63812 -25.23068 -22.73099 -22.13509 -21.04558 -20.47628 -19.70887 -17.84956 -17.26226 -16.39393 -16.15070 -15.69940 -15.22363 -15.01827 -14.46855 -14.27091 -14.07052 -13.58703 -13.23279 -13.04949 -13.00720 -12.73776 -12.60446 -12.44324 -12.38497 -11.92623 -11.58872 -11.38107 -11.22236 -11.11818 -11.06991 -10.86920 -10.71901 -10.47664 -9.86283 -9.77359 -9.62690 -9.21380 -8.76641 -7.54162 -7.12668 -6.76268 -4.32822 0.98100 2.71401 2.76514 2.97364 3.07228 3.07388 3.11566 3.19746 3.74799 3.93124 4.09928 4.43789 4.56581 4.59541 4.75568 5.07819 5.16804 5.32749 5.45674 5.56252 5.58621 5.64870 5.69321 5.85499 5.99986 6.02344 6.04675 6.21102 6.26073 6.42305 6.70345 6.87631 7.03637 7.22051 7.28206 7.60475 7.64853 7.75548 8.00021 8.14355 8.35856 8.62065 8.78129 8.97725 10.15393 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.005054 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.904037 B = 5538.767020 C = 6064.093918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.109 3.891 4 H 0.121 0.879 5 O -0.319 6.319 6 C 0.478 3.522 7 O -0.434 6.434 8 C 0.000 4.000 9 O -0.212 6.212 10 C -0.012 4.012 11 C -0.147 4.147 12 C -0.215 4.215 13 C -0.118 4.118 14 C -0.142 4.142 15 C 0.110 3.890 16 C -0.446 4.446 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.139 4.139 25 C -0.090 4.090 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.127 0.873 35 H 0.281 0.719 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.598 -3.527 8.225 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C 0.053 3.947 4 H 0.138 0.862 5 O -0.236 6.236 6 C 0.319 3.681 7 O -0.318 6.318 8 C -0.047 4.047 9 O -0.123 6.123 10 C -0.053 4.053 11 C -0.166 4.166 12 C -0.234 4.234 13 C -0.137 4.137 14 C -0.162 4.162 15 C 0.108 3.892 16 C -0.475 4.475 17 H 0.101 0.899 18 C -0.143 4.143 19 N -0.420 5.420 20 Si 0.734 3.266 21 H -0.194 1.194 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.140 4.140 25 C -0.146 4.146 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.145 0.855 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.406 -3.204 7.706 13.339 hybrid contribution 0.408 0.522 0.092 0.669 sum -9.997 -2.682 7.798 12.960 Atomic orbital electron populations 1.21766 0.94361 1.02188 1.02587 1.21763 0.97218 0.92889 1.04232 1.22378 0.91911 0.95779 0.84611 0.86169 1.87436 1.31181 1.70856 1.34112 1.21756 0.83397 0.77306 0.85634 1.90925 1.84955 1.36734 1.19167 1.20887 0.86561 1.01121 0.96103 1.84250 1.15994 1.64182 1.47918 1.19297 0.95547 0.98079 0.92392 1.20490 0.97325 0.99646 0.99133 1.20119 0.96456 1.05638 1.01216 1.20426 0.94228 0.99383 0.99633 1.20899 1.00372 0.99137 0.95772 1.17008 0.87656 0.93005 0.91568 1.19430 0.90589 1.09979 1.27536 0.89946 1.25902 0.98623 0.96495 0.93236 1.69824 1.11796 1.24846 1.35506 0.86283 0.78884 0.82208 0.79247 1.19437 1.20056 1.18364 1.23286 0.95282 0.96130 0.99335 1.20366 0.99432 1.01627 0.93192 0.92394 0.91834 0.92099 0.90497 0.89212 0.89739 0.89097 0.88973 0.85500 0.90781 0.89934 0.89450 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.84 37.16 0.37 -0.87 16 2 C -0.12 -1.17 5.66 -26.73 -0.15 -1.33 16 3 C 0.11 1.29 3.63 -27.70 -0.10 1.19 16 4 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 5 O -0.32 -5.14 10.64 -39.81 -0.42 -5.56 16 6 C 0.48 9.61 7.28 34.27 0.25 9.86 16 7 O -0.43 -10.36 17.93 -19.77 -0.35 -10.72 16 8 C 0.00 0.00 5.09 -37.70 -0.19 -0.19 16 9 O -0.21 -5.06 9.30 -2.72 -0.03 -5.09 16 10 C -0.01 -0.30 6.68 -38.29 -0.26 -0.55 16 11 C -0.15 -3.55 8.81 -39.47 -0.35 -3.90 16 12 C -0.21 -5.04 10.04 -39.35 -0.39 -5.43 16 13 C -0.12 -2.83 9.97 -39.99 -0.40 -3.23 16 14 C -0.14 -3.74 8.63 -39.28 -0.34 -4.08 16 15 C 0.11 3.03 5.58 -106.68 -0.60 2.43 16 16 C -0.45 -12.07 8.72 -37.86 -0.33 -12.40 16 17 H 0.08 2.22 7.66 -52.49 -0.40 1.82 16 18 C 0.07 1.88 5.16 -17.33 -0.09 1.79 16 19 N -0.79 -20.22 10.95 55.55 0.61 -19.62 16 20 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.14 -2.00 5.77 -100.82 -0.58 -2.58 16 25 C -0.09 -1.05 10.26 36.01 0.37 -0.68 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.60 7.96 -51.93 -0.41 0.19 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.65 8.06 -51.93 -0.42 0.24 16 31 H 0.08 1.89 6.15 -52.48 -0.32 1.57 16 32 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 34 H 0.13 3.37 6.18 -52.49 -0.32 3.04 16 35 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -31.08 328.22 -7.89 -38.97 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.82 Total: 3.30 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.79 Total: -19.98 kcal Atomic # 7 Polarization: -20.22 SS G_CDS: 0.61 Total: -19.62 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.80 Total: -21.37 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.08 -7.89 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.546 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds