Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47352 * 2 1 4 4 H 1.09005 * 110.10400 * 53.37315 * 3 2 1 5 5 O 1.45503 * 110.12576 * 291.69280 * 3 2 1 6 6 C 1.34583 * 107.70332 * 240.83773 * 5 3 2 7 7 O 1.21509 * 125.04783 * 180.02562 * 6 5 3 8 8 C 1.46971 * 109.90390 * 359.97438 * 6 5 3 9 9 O 1.35926 * 125.31874 * 179.97438 * 8 6 5 10 10 C 1.35582 * 118.00120 * 294.00522 * 9 8 6 11 11 C 1.38513 * 120.27029 * 354.39074 * 10 9 8 12 12 C 1.38258 * 120.04718 * 179.76866 * 11 10 9 13 13 C 1.38848 * 120.60002 * 0.51315 * 12 11 10 14 14 C 1.36474 * 120.54983 * 359.74555 * 13 12 11 15 15 C 1.40732 * 119.93114 * 359.97438 * 14 13 12 16 16 C 1.41113 * 120.29382 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00350 * 154.71354 * 16 15 14 18 18 C 1.39930 * 120.00221 * 334.71119 * 16 15 14 19 19 N 1.30864 * 120.00011 * 343.24695 * 18 16 15 20 20 Si 1.86805 * 120.00283 * 163.23728 * 18 16 15 21 21 H 1.48504 * 109.46659 * 90.00537 * 20 18 16 22 22 H 1.48498 * 109.47242 * 210.00582 * 20 18 16 23 23 H 1.48503 * 109.46945 * 330.00903 * 20 18 16 24 24 C 1.33502 * 109.36607 * 0.02562 * 8 6 5 25 25 C 1.50701 * 126.54716 * 179.97438 * 24 8 6 26 26 H 1.09001 * 109.46566 * 300.00027 * 1 2 3 27 27 H 1.08998 * 109.47148 * 59.99808 * 1 2 3 28 28 H 1.08991 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47072 * 239.99865 * 2 1 3 30 30 H 1.08998 * 109.47148 * 120.00192 * 2 1 3 31 31 H 1.08006 * 119.97648 * 0.02562 * 11 10 9 32 32 H 1.08003 * 119.70665 * 180.25298 * 12 11 10 33 33 H 1.08004 * 119.72867 * 179.76026 * 13 12 11 34 34 H 1.07996 * 120.03447 * 180.02562 * 14 13 12 35 35 H 0.96997 * 120.00268 * 179.97438 * 19 18 16 36 36 H 1.08997 * 109.47315 * 265.60433 * 25 24 8 37 37 H 1.08998 * 109.46994 * 25.60601 * 25 24 8 38 38 H 1.08995 * 109.47242 * 145.60087 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5892 1.9993 0.8215 5 8 1.7309 2.0828 -1.2694 6 6 2.8952 2.4427 -1.8406 7 8 3.0022 3.0043 -2.9127 8 6 4.0179 2.0565 -0.9742 9 8 5.3319 2.2705 -1.2486 10 6 5.8782 1.6116 -2.3000 11 6 5.1403 0.6638 -2.9897 12 6 5.7003 -0.0020 -4.0643 13 6 7.0057 0.2619 -4.4568 14 6 7.7566 1.1871 -3.7914 15 6 7.2073 1.8823 -2.6981 16 6 7.9770 2.8402 -2.0042 17 1 7.4882 3.6401 -1.4679 18 6 9.3736 2.7536 -2.0109 19 7 9.9583 1.6376 -2.3649 20 14 10.4035 4.2310 -1.5148 21 1 10.6560 4.1895 -0.0520 22 1 11.6980 4.1986 -2.2417 23 1 9.6751 5.4792 -1.8562 24 6 3.5456 1.4618 0.1237 25 6 4.3590 0.9139 1.2680 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 4.1252 0.4476 -2.6905 32 1 5.1186 -0.7370 -4.6007 33 1 7.4305 -0.2692 -5.2959 34 1 8.7710 1.3861 -4.1041 35 1 10.9264 1.5776 -2.3699 36 1 4.5391 -0.1493 1.1094 37 1 5.3122 1.4399 1.3207 38 1 3.8142 1.0550 2.2013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276378.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = -89.809788 kcal Electronic energy + Delta-G solvation = -22936.560543 eV Core-core repulsion = 19516.414432 eV Total energy + Delta-G solvation = -3420.146110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.119 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.89930 -40.63524 -38.95385 -38.34438 -35.58572 -35.38101 -33.86801 -31.71743 -30.69362 -29.29065 -27.65667 -27.14182 -24.01452 -23.59609 -22.82230 -21.75670 -21.22124 -19.56430 -19.00224 -17.87016 -17.55382 -17.38650 -16.65798 -16.53044 -16.13123 -15.82371 -15.19892 -14.85120 -14.63988 -14.49670 -14.41052 -14.34320 -14.15310 -13.78963 -13.38359 -13.32719 -13.04069 -12.80984 -12.78260 -12.57475 -12.39960 -12.18004 -11.93527 -11.85059 -11.74796 -11.52355 -11.26879 -11.08246 -10.17385 -9.49484 -9.00047 -8.63146 -6.31662 -0.37389 0.86045 0.93854 1.36907 1.37746 1.46679 1.53056 1.76001 2.20804 2.50165 2.67643 2.76089 3.11217 3.59601 3.64339 3.88580 4.12862 4.17575 4.28656 4.37493 4.43131 4.54962 4.62352 4.70902 4.81485 4.88779 4.98550 5.07757 5.11488 5.14149 5.23159 5.32680 5.37128 5.41472 5.43449 5.74396 5.79745 6.05703 6.14261 6.20995 6.48056 6.70532 6.82829 7.11658 8.30923 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.005054 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.904037 B = 5538.767020 C = 6064.093918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.099 3.901 4 H 0.170 0.830 5 O -0.318 6.318 6 C 0.481 3.519 7 O -0.496 6.496 8 C -0.081 4.081 9 O -0.233 6.233 10 C -0.020 4.020 11 C -0.156 4.156 12 C -0.214 4.214 13 C -0.123 4.123 14 C -0.163 4.163 15 C 0.073 3.927 16 C -0.483 4.483 17 H 0.066 0.934 18 C 0.039 3.961 19 N -0.820 5.820 20 Si 0.981 3.019 21 H -0.258 1.258 22 H -0.260 1.260 23 H -0.267 1.267 24 C -0.067 4.067 25 C -0.098 4.098 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.291 0.709 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 -4.873 10.852 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C 0.045 3.955 4 H 0.187 0.813 5 O -0.234 6.234 6 C 0.325 3.675 7 O -0.384 6.384 8 C -0.127 4.127 9 O -0.145 6.145 10 C -0.062 4.062 11 C -0.175 4.175 12 C -0.233 4.233 13 C -0.141 4.141 14 C -0.183 4.183 15 C 0.070 3.930 16 C -0.512 4.512 17 H 0.085 0.915 18 C -0.176 4.176 19 N -0.446 5.446 20 Si 0.801 3.199 21 H -0.183 1.183 22 H -0.184 1.184 23 H -0.191 1.191 24 C -0.069 4.069 25 C -0.154 4.154 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.144 0.856 31 H 0.116 0.884 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.823 -4.588 10.365 16.379 hybrid contribution 0.604 0.763 -0.509 1.098 sum -11.219 -3.825 9.856 15.415 Atomic orbital electron populations 1.21770 0.92987 1.03239 1.02709 1.21867 0.98336 0.90452 1.05057 1.23132 0.90090 0.98213 0.84105 0.81260 1.87425 1.29661 1.70603 1.35682 1.21870 0.84340 0.76189 0.85054 1.90872 1.85864 1.39959 1.21725 1.21082 0.84964 1.07745 0.98901 1.84234 1.18476 1.64739 1.47097 1.19525 0.95564 0.98216 0.92865 1.20704 0.97921 0.99462 0.99366 1.20542 0.96467 1.05554 1.00776 1.20722 0.94412 0.98888 1.00125 1.20910 1.00422 1.00571 0.96392 1.17412 0.89031 0.94034 0.92530 1.19503 0.92029 1.10399 1.29268 0.91532 1.26669 0.98879 0.99207 0.92809 1.69847 1.12625 1.26329 1.35792 0.85231 0.77325 0.77864 0.79468 1.18258 1.18379 1.19112 1.24069 0.97010 0.89219 0.96613 1.20664 0.98656 1.01939 0.94120 0.90174 0.93850 0.90677 0.92443 0.85609 0.88438 0.85973 0.86090 0.86612 0.89804 0.88022 0.91836 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.84 71.98 0.71 -1.09 16 2 C -0.12 -1.75 5.66 30.59 0.17 -1.57 16 3 C 0.10 1.98 3.63 29.96 0.11 2.08 16 4 H 0.17 1.98 8.14 -2.38 -0.02 1.96 16 5 O -0.32 -9.90 10.64 -55.27 -0.59 -10.49 16 6 C 0.48 19.91 7.28 70.11 0.51 20.42 16 7 O -0.50 -25.13 17.93 20.28 0.36 -24.77 16 8 C -0.08 -3.23 5.09 23.49 0.12 -3.11 16 9 O -0.23 -11.75 9.30 -32.64 -0.30 -12.05 16 10 C -0.02 -1.06 6.68 23.10 0.15 -0.91 16 11 C -0.16 -7.71 8.81 22.34 0.20 -7.51 16 12 C -0.21 -10.06 10.04 22.42 0.23 -9.83 16 13 C -0.12 -5.98 9.97 22.00 0.22 -5.76 16 14 C -0.16 -8.96 8.63 22.47 0.19 -8.77 16 15 C 0.07 4.20 5.58 -21.20 -0.12 4.08 16 16 C -0.48 -27.69 8.72 23.39 0.20 -27.49 16 17 H 0.07 3.87 7.66 -2.91 -0.02 3.84 16 18 C 0.04 2.04 5.16 85.25 0.44 2.48 16 19 N -0.82 -42.95 10.95 21.83 0.24 -42.72 16 20 Si 0.98 39.40 29.59 68.60 2.03 41.43 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 C -0.07 -1.79 5.77 -17.40 -0.10 -1.89 16 25 C -0.10 -1.93 10.26 71.24 0.73 -1.20 16 26 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.04 0.71 7.96 -2.39 -0.02 0.69 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.13 1.02 8.06 -2.39 -0.02 1.00 16 31 H 0.10 4.45 6.15 -2.91 -0.02 4.43 16 32 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 33 H 0.12 5.03 8.06 -2.91 -0.02 5.00 16 34 H 0.12 6.46 6.18 -2.91 -0.02 6.44 16 35 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 38 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -75.44 328.22 6.58 -68.86 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 1.07 Total: 19.81 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 3.77 Total: -40.07 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.24 Total: -42.72 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -0.53 Total: -47.31 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -75.44 6.58 -68.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276378.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.950 kcal (2) G-P(sol) polarization free energy of solvation -75.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds