Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47290 * 2 1 4 4 C 1.46902 * 110.99747 * 63.61508 * 3 2 1 5 5 C 1.50706 * 109.47072 * 68.18883 * 4 3 2 6 6 H 1.07997 * 119.99943 * 4.32948 * 5 4 3 7 7 C 1.37876 * 119.99895 * 184.32759 * 5 4 3 8 8 N 1.31519 * 120.00185 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00218 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47046 * 89.99970 * 9 7 5 11 11 H 1.48496 * 109.47426 * 210.00140 * 9 7 5 12 12 H 1.48507 * 109.46599 * 330.00147 * 9 7 5 13 13 C 1.46898 * 111.00298 * 299.66472 * 3 2 1 14 14 C 1.50701 * 109.46557 * 288.52037 * 13 3 2 15 15 C 1.38668 * 120.79287 * 101.65001 * 14 13 3 16 16 C 1.38187 * 119.16688 * 180.02562 * 15 14 13 17 17 N 1.31889 * 120.76091 * 0.02562 * 16 15 14 18 18 C 1.31855 * 121.72828 * 359.95604 * 17 16 15 19 19 C 1.38224 * 120.76201 * 0.04600 * 18 17 16 20 20 C 1.50698 * 120.41666 * 180.25470 * 19 18 17 21 21 F 1.39903 * 109.47364 * 359.75052 * 20 19 18 22 22 F 1.39907 * 109.47243 * 119.75213 * 20 19 18 23 23 F 1.39896 * 109.47348 * 239.74933 * 20 19 18 24 24 H 1.09002 * 109.46645 * 304.34368 * 1 2 3 25 25 H 1.09000 * 109.47163 * 64.34642 * 1 2 3 26 26 H 1.09004 * 109.46701 * 184.34936 * 1 2 3 27 27 H 1.09002 * 109.47395 * 240.00359 * 2 1 3 28 28 H 1.09003 * 109.47518 * 120.00247 * 2 1 3 29 29 H 1.08998 * 109.47533 * 188.19129 * 4 3 2 30 30 H 1.09000 * 109.47391 * 308.19158 * 4 3 2 31 31 H 0.96999 * 120.00471 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47155 * 168.52211 * 13 3 2 33 33 H 1.08997 * 109.47088 * 48.51343 * 13 3 2 34 34 H 1.08006 * 120.41662 * 359.97438 * 15 14 13 35 35 H 1.07997 * 119.61643 * 179.97438 * 16 15 14 36 36 H 1.07996 * 119.61936 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6205 2.0844 1.2286 5 6 2.3546 1.4930 2.4044 6 1 3.0994 0.7271 2.2463 7 6 2.0754 1.9298 3.6820 8 7 1.1680 2.8622 3.8746 9 14 2.9857 1.1973 5.1395 10 1 4.2140 1.9888 5.4044 11 1 2.1088 1.2284 6.3374 12 1 3.3582 -0.2077 4.8350 13 6 1.5553 2.1076 -1.1916 14 6 2.2843 1.5939 -2.4064 15 6 1.6731 0.7054 -3.2782 16 6 2.3730 0.2554 -4.3814 17 7 3.6072 0.6608 -4.6088 18 6 4.2195 1.5049 -3.8019 19 6 3.5824 1.9976 -2.6785 20 6 4.2875 2.9664 -1.7647 21 9 5.5752 3.2145 -2.2522 22 9 3.5693 4.1659 -1.7130 23 9 4.3727 2.4184 -0.4804 24 1 -0.3633 0.5798 0.8486 25 1 -0.3633 0.4449 -0.9264 26 1 -0.3633 -1.0248 0.0779 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8674 3.1425 1.1410 30 1 0.5465 1.9731 1.3775 31 1 0.9713 3.1692 4.7735 32 1 1.7548 3.1724 -1.0715 33 1 0.4841 1.9504 -1.3174 34 1 0.6630 0.3688 -3.0967 35 1 1.9041 -0.4370 -5.0649 36 1 5.2306 1.8147 -4.0210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237290614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = -103.913658 kcal Electronic energy + Delta-G solvation = -24123.795315 eV Core-core repulsion = 20193.473625 eV Total energy + Delta-G solvation = -3930.321689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.74251 -47.37605 -46.97204 -40.43173 -37.41552 -33.53514 -32.48613 -31.88282 -29.62551 -27.78232 -26.10663 -25.07907 -23.32636 -22.72658 -21.90201 -19.53526 -18.28102 -17.98619 -17.87767 -16.51633 -16.30076 -16.03082 -15.21333 -15.01642 -14.68873 -14.27213 -14.04693 -13.89658 -13.73858 -13.65983 -13.35821 -13.20889 -13.09470 -13.01719 -12.80834 -12.06455 -11.91723 -11.82642 -11.36407 -11.11517 -11.07176 -10.73230 -10.58690 -10.16125 -9.95258 -9.70751 -9.65138 -9.40678 -9.22936 -8.43658 -7.31809 -6.03388 -4.03821 0.73691 1.08674 2.96431 3.32303 3.38425 3.41639 3.51685 3.98211 4.29389 4.34654 4.41051 4.58965 4.63462 4.81875 5.05125 5.06700 5.24676 5.32624 5.45599 5.56387 5.66822 5.77824 5.86559 5.94152 6.03767 6.16888 6.32077 6.43680 6.58447 6.79652 7.21272 7.35118 7.71242 7.76880 8.01925 8.11306 8.48078 9.03500 9.60012 11.07310 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.005987 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.756581 B = 4675.744590 C = 5468.329807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.058 3.942 3 N -0.519 5.519 4 C 0.192 3.808 5 C -0.500 4.500 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.060 3.940 14 C 0.035 3.965 15 C -0.173 4.173 16 C 0.122 3.878 17 N -0.490 5.490 18 C 0.144 3.856 19 C -0.219 4.219 20 C 0.511 3.489 21 F -0.188 7.188 22 F -0.180 7.180 23 F -0.136 7.136 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.026 0.974 30 H 0.005 0.995 31 H 0.261 0.739 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -2.897 -15.099 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.070 4.070 3 N -0.243 5.243 4 C 0.068 3.932 5 C -0.539 4.539 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.068 4.068 14 C 0.026 3.974 15 C -0.194 4.194 16 C -0.034 4.034 17 N -0.199 5.199 18 C -0.013 4.013 19 C -0.223 4.223 20 C 0.455 3.545 21 F -0.169 7.169 22 F -0.161 7.161 23 F -0.117 7.117 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.044 0.956 30 H 0.022 0.978 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.179 0.821 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.063 -3.091 -15.653 16.088 hybrid contribution -0.847 0.177 1.785 1.984 sum 1.216 -2.913 -13.868 14.223 Atomic orbital electron populations 1.22408 0.99282 1.01474 1.01681 1.22013 0.92094 0.91283 1.01605 1.62456 1.58451 1.01747 1.01649 1.19815 0.95007 0.93817 0.84607 1.21087 1.21119 1.21641 0.90068 0.91867 1.24959 0.95359 0.95286 0.98942 1.69951 1.32663 1.29452 1.21857 0.86524 0.79581 0.79564 0.81898 1.20646 1.21405 1.19898 1.21414 0.96757 0.99705 0.88897 1.20294 0.91687 0.90935 0.94475 1.22114 1.02281 0.99012 0.95963 1.22939 0.89978 0.95709 0.94781 1.67837 1.10409 1.11790 1.29881 1.22660 0.99654 0.90761 0.88263 1.20986 0.97322 1.04391 0.99602 1.18050 0.76045 0.79479 0.80882 1.93123 1.40911 1.94808 1.88094 1.93167 1.77836 1.48523 1.96619 1.93461 1.95689 1.84673 1.37857 0.91068 0.93853 0.93152 0.93218 0.89657 0.95575 0.97774 0.92968 0.89178 0.92853 0.84024 0.82137 0.81678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 9.26 37.16 0.34 -2.74 16 2 C 0.06 1.06 5.75 -3.83 -0.02 1.04 16 3 N -0.52 -10.44 2.96 -237.51 -0.70 -11.15 16 4 C 0.19 4.74 4.56 -4.97 -0.02 4.72 16 5 C -0.50 -13.64 8.40 -34.44 -0.29 -13.93 16 6 H 0.06 1.74 7.43 -52.49 -0.39 1.34 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 9 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.06 1.02 4.23 -4.98 -0.02 1.00 16 14 C 0.03 0.51 4.71 -104.32 -0.49 0.02 16 15 C -0.17 -2.05 9.10 -39.44 -0.36 -2.41 16 16 C 0.12 1.33 11.18 -17.55 -0.20 1.14 16 17 N -0.49 -6.30 10.36 -13.25 -0.14 -6.44 16 18 C 0.14 1.89 10.60 -17.55 -0.19 1.70 16 19 C -0.22 -3.24 5.38 -104.48 -0.56 -3.80 16 20 C 0.51 8.33 2.89 36.00 0.10 8.44 16 21 F -0.19 -2.78 16.00 2.25 0.04 -2.74 16 22 F -0.18 -3.03 15.50 2.25 0.03 -2.99 16 23 F -0.14 -2.70 15.18 2.25 0.03 -2.66 16 24 H 0.07 1.37 6.13 -51.93 -0.32 1.05 16 25 H 0.04 0.61 6.41 -51.93 -0.33 0.28 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.81 6.93 -51.93 -0.36 0.45 16 28 H 0.09 1.73 7.01 -51.93 -0.36 1.37 16 29 H 0.03 0.71 7.82 -51.93 -0.41 0.30 16 30 H 0.00 0.12 5.96 -51.93 -0.31 -0.19 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.09 1.62 5.84 -51.93 -0.30 1.31 16 33 H 0.05 0.83 5.76 -51.93 -0.30 0.53 16 34 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.17 1.83 7.17 -52.49 -0.38 1.45 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -29.67 304.69 -6.09 -35.76 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -3.86 Total: -2.03 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.80 Total: -3.38 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.10 Total: -43.07 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 0.11 Total: -8.40 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.67 -6.09 -35.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237290614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.158 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds