Wall clock time and date at job start Tue Mar 31 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00280 * 2 1 4 4 H 1.48496 * 109.47070 * 269.99543 * 3 2 1 5 5 H 1.48507 * 109.46872 * 29.99912 * 3 2 1 6 6 H 1.48498 * 109.46960 * 149.99401 * 3 2 1 7 7 C 1.37875 * 119.99409 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99693 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00578 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.47417 * 179.97438 * 9 7 2 11 11 C 1.38029 * 120.06041 * 258.79829 * 10 9 7 12 12 C 1.38312 * 120.12091 * 180.02562 * 11 10 9 13 13 C 1.38346 * 120.24819 * 0.04453 * 12 11 10 14 14 C 1.37991 * 120.12223 * 359.67669 * 13 12 11 15 15 C 1.39346 * 120.06245 * 78.82649 * 10 9 7 16 16 C 1.48351 * 120.12072 * 359.97400 * 15 10 9 17 17 C 1.40435 * 119.72018 * 237.20713 * 16 15 10 18 18 C 1.35792 * 120.87154 * 179.97438 * 17 16 15 19 19 C 1.40657 * 119.97987 * 0.02562 * 18 17 16 20 20 C 1.40516 * 121.07475 * 180.02562 * 19 18 17 21 21 C 1.36117 * 119.71158 * 179.97438 * 20 19 18 22 22 C 1.39368 * 120.99903 * 359.97438 * 21 20 19 23 23 C 1.36082 * 120.96677 * 0.02562 * 22 21 20 24 24 C 1.40624 * 119.65984 * 359.97438 * 23 22 21 25 25 C 1.38209 * 119.71521 * 57.21222 * 16 15 10 26 26 H 0.97004 * 119.99446 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47207 * 59.99616 * 9 7 2 28 28 H 1.09010 * 109.47107 * 300.00039 * 9 7 2 29 29 H 1.07998 * 119.94007 * 0.02562 * 11 10 9 30 30 H 1.07993 * 119.87535 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.93821 * 179.97438 * 13 12 11 32 32 H 1.08000 * 120.06105 * 180.29701 * 14 13 12 33 33 H 1.08002 * 119.56190 * 359.97438 * 17 16 15 34 34 H 1.07998 * 120.01153 * 180.02562 * 18 17 16 35 35 H 1.07998 * 120.14459 * 0.02562 * 20 19 18 36 36 H 1.07997 * 119.49874 * 180.02562 * 21 20 19 37 37 H 1.08011 * 119.51830 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.17175 * 180.27407 * 23 22 21 39 39 H 1.07996 * 120.26653 * 0.03660 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5031 -4.3210 -1.1713 12 6 3.4012 -5.3729 -1.1727 13 6 4.0301 -5.7537 -0.0008 14 6 3.7692 -5.0809 1.1754 15 6 2.8614 -4.0234 1.1837 16 6 2.5721 -3.3003 2.4463 17 6 3.6218 -2.7020 3.1622 18 6 3.3835 -2.0340 4.3202 19 6 2.0714 -1.9351 4.8173 20 6 1.7986 -1.2489 6.0128 21 6 0.5183 -1.1699 6.4683 22 6 -0.5310 -1.7598 5.7660 23 6 -0.3057 -2.4324 4.6047 24 6 1.0040 -2.5351 4.1029 25 6 1.2718 -3.2212 2.9080 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8904 29 1 2.0144 -4.0284 -2.0889 30 1 3.6120 -5.8990 -2.0919 31 1 4.7302 -6.5761 -0.0075 32 1 4.2643 -5.3760 2.0887 33 1 4.6319 -2.7742 2.7868 34 1 4.2011 -1.5788 4.8593 35 1 2.6011 -0.7856 6.5675 36 1 0.3125 -0.6413 7.3873 37 1 -1.5379 -1.6820 6.1491 38 1 -1.1290 -2.8809 4.0686 39 1 0.4684 -3.6836 2.3540 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:12 Heat of formation + Delta-G solvation = 55.215193 kcal Electronic energy + Delta-G solvation = -21697.373135 eV Core-core repulsion = 18726.657794 eV Total energy + Delta-G solvation = -2970.715341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.98807 -38.63308 -35.91980 -33.51843 -32.40371 -31.35995 -31.07740 -29.19386 -28.10113 -26.95393 -23.71068 -22.92348 -22.70939 -21.43954 -21.07357 -20.00625 -17.13512 -16.67258 -16.20894 -16.03875 -15.25831 -14.61276 -14.57213 -14.25196 -14.10737 -13.58842 -13.14092 -13.00718 -12.93405 -12.54053 -12.45486 -12.31778 -11.75498 -11.60453 -11.35537 -11.15292 -10.91811 -10.74366 -10.66277 -10.50900 -10.42808 -10.06234 -9.59922 -9.48352 -9.33934 -8.44850 -8.36953 -8.04083 -7.77655 -7.21318 -6.01142 -4.02377 0.95594 1.39482 1.96780 2.08786 2.56308 3.31516 3.38009 3.42166 3.44043 4.34733 4.50706 4.61313 4.99595 5.15628 5.19028 5.30181 5.34865 5.45113 5.47338 5.54389 5.61998 5.68339 5.81366 5.83454 5.84060 6.06587 6.16631 6.22414 6.36225 6.41386 6.56876 6.61851 6.67929 6.74221 6.82110 6.95515 7.01815 7.04066 7.13253 7.23428 7.27322 7.47216 7.52082 7.67714 7.81792 7.94331 8.34536 9.00013 9.60154 11.08933 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.010802 B = 0.007590 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.480677 B = 3688.241644 C = 5232.206259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.054 0.946 9 C 0.041 3.959 10 C -0.020 4.020 11 C -0.129 4.129 12 C -0.120 4.120 13 C -0.150 4.150 14 C -0.109 4.109 15 C -0.061 4.061 16 C -0.011 4.011 17 C -0.089 4.089 18 C -0.119 4.119 19 C -0.052 4.052 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.095 4.095 24 C -0.043 4.043 25 C -0.075 4.075 26 H 0.260 0.740 27 H 0.025 0.975 28 H 0.041 0.959 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -7.568 8.584 11.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.020 4.020 11 C -0.147 4.147 12 C -0.138 4.138 13 C -0.168 4.168 14 C -0.127 4.127 15 C -0.061 4.061 16 C -0.011 4.011 17 C -0.107 4.107 18 C -0.137 4.137 19 C -0.052 4.052 20 C -0.127 4.127 21 C -0.144 4.144 22 C -0.147 4.147 23 C -0.113 4.113 24 C -0.043 4.043 25 C -0.093 4.093 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.430 -7.443 8.588 11.871 hybrid contribution 0.494 1.191 -0.218 1.307 sum 3.924 -6.252 8.370 11.160 Atomic orbital electron populations 1.69939 1.05891 1.26596 1.50606 1.24910 0.94792 0.98905 0.95243 0.86649 0.80078 0.83697 0.78060 1.20685 1.21194 1.19796 1.20906 0.92759 0.89636 1.50547 0.92816 1.18545 0.92764 0.89583 0.98694 1.20789 0.95498 0.94677 0.91009 1.21050 0.99266 0.96202 0.98155 1.21089 0.97479 0.97680 0.97515 1.20794 1.01880 1.01098 0.93049 1.21049 0.97934 0.95978 0.97715 1.18683 0.98462 0.96311 0.92665 1.18498 0.92977 0.96801 0.92834 1.20777 0.98587 0.96987 0.94332 1.20754 0.95312 1.00524 0.97098 1.18039 0.93358 0.98561 0.95214 1.20937 0.96942 0.99243 0.95614 1.20715 0.93023 1.00566 1.00050 1.20713 0.98774 0.99202 0.96040 1.21053 0.95675 0.98755 0.95774 1.17980 0.93104 0.98172 0.95005 1.21236 0.96007 0.98018 0.94049 0.92996 0.95630 0.94062 0.86354 0.87068 0.87039 0.86870 0.86416 0.86167 0.86231 0.86691 0.86549 0.85800 0.85514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -13.90 8.80 -34.44 -0.30 -14.21 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.03 4.58 -29.04 -0.13 0.89 16 10 C -0.02 -0.42 5.08 -104.29 -0.53 -0.95 16 11 C -0.13 -2.46 9.66 -39.63 -0.38 -2.84 16 12 C -0.12 -1.94 10.04 -39.51 -0.40 -2.33 16 13 C -0.15 -2.32 10.03 -39.63 -0.40 -2.72 16 14 C -0.11 -1.82 9.63 -39.25 -0.38 -2.20 16 15 C -0.06 -1.20 5.36 -104.90 -0.56 -1.76 16 16 C -0.01 -0.22 4.66 -104.92 -0.49 -0.71 16 17 C -0.09 -1.60 9.51 -39.63 -0.38 -1.98 16 18 C -0.12 -2.00 9.74 -39.55 -0.38 -2.38 16 19 C -0.05 -0.91 5.74 -106.78 -0.61 -1.53 16 20 C -0.11 -1.65 9.76 -39.49 -0.39 -2.03 16 21 C -0.13 -1.76 9.95 -39.92 -0.40 -2.16 16 22 C -0.13 -1.89 9.95 -39.94 -0.40 -2.29 16 23 C -0.09 -1.58 9.77 -39.46 -0.39 -1.96 16 24 C -0.04 -0.80 5.74 -106.85 -0.61 -1.41 16 25 C -0.08 -1.48 7.58 -38.79 -0.29 -1.77 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.03 0.68 7.99 -51.93 -0.41 0.27 16 28 H 0.04 1.08 4.96 -51.92 -0.26 0.82 16 29 H 0.12 2.17 8.03 -52.49 -0.42 1.75 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 33 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 38 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.13 2.45 7.09 -52.49 -0.37 2.08 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -30.69 331.81 -11.61 -42.31 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -4.81 Total: 3.81 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: -7.52 Total: -42.64 kcal Atomic # 7 Polarization: -26.22 SS G_CDS: 0.74 Total: -25.48 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.69 -11.61 -42.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.521 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds