Wall clock time and date at job start Tue Mar 31 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47238 * 60.00536 * 3 2 1 6 6 H 1.48497 * 109.47223 * 300.00437 * 3 2 1 7 7 C 1.37882 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.53934 * 113.73027 * 276.72766 * 9 7 2 11 11 N 1.47963 * 86.17713 * 221.91765 * 10 9 7 12 12 C 1.46903 * 110.99829 * 137.58240 * 11 10 9 13 13 H 1.09004 * 110.72932 * 310.62975 * 12 11 10 14 14 C 1.54342 * 110.82312 * 74.03035 * 12 11 10 15 15 C 1.51370 * 105.17012 * 144.57368 * 14 12 11 16 16 C 1.38500 * 130.39219 * 162.81858 * 15 14 12 17 17 C 1.38105 * 120.21556 * 179.97438 * 16 15 14 18 18 C 1.38251 * 119.93404 * 359.97438 * 17 16 15 19 19 N 1.48020 * 120.03256 * 180.02562 * 18 17 16 20 20 O 1.21793 * 120.00177 * 359.97438 * 19 18 17 21 21 O 1.21805 * 120.00137 * 180.02562 * 19 18 17 22 22 C 1.38109 * 119.93729 * 0.02562 * 18 17 16 23 23 C 1.38216 * 109.75785 * 342.80891 * 15 14 12 24 24 C 1.51674 * 109.84198 * 0.16571 * 23 15 14 25 25 C 1.47965 * 90.76345 * 24.68968 * 11 10 9 26 26 H 0.97000 * 119.99705 * 180.02562 * 1 2 3 27 27 H 1.09004 * 112.93569 * 48.43182 * 9 7 2 28 28 H 1.08994 * 113.76041 * 336.23276 * 10 9 7 29 29 H 1.08994 * 113.76083 * 107.60394 * 10 9 7 30 30 H 1.08997 * 110.30703 * 263.49747 * 14 12 11 31 31 H 1.08997 * 110.30269 * 25.55255 * 14 12 11 32 32 H 1.07997 * 119.89200 * 0.02562 * 16 15 14 33 33 H 1.07994 * 120.03484 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.89462 * 179.97438 * 22 18 17 35 35 H 1.08995 * 110.25758 * 258.10466 * 24 23 15 36 36 H 1.08991 * 110.49790 * 135.84593 * 24 23 15 37 37 H 1.08994 * 113.75993 * 220.98968 * 25 11 10 38 38 H 1.08997 * 113.75697 * 89.62663 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 1.2126 6 1 1.8904 2.3965 -1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.7990 -2.9534 1.3990 11 7 1.2181 -4.3108 0.9854 12 6 1.9382 -4.9926 2.0692 13 1 2.7192 -4.3508 2.4770 14 6 0.9630 -5.4420 3.1780 15 6 1.5157 -6.7580 3.6820 16 6 1.2542 -7.4521 4.8517 17 6 1.8864 -8.6541 5.1027 18 6 2.7829 -9.1671 4.1837 19 7 3.4613 -10.4554 4.4503 20 8 3.2301 -11.0639 5.4797 21 8 4.2514 -10.9067 3.6405 22 6 3.0450 -8.4764 3.0168 23 6 2.4126 -7.2705 2.7638 24 6 2.5288 -6.3315 1.5783 25 6 2.1617 -3.7403 -0.0013 26 1 -0.4850 -0.8401 0.0004 27 1 0.4616 -2.5339 -0.7513 28 1 1.3965 -2.5374 2.2101 29 1 -0.2737 -2.8571 1.5668 30 1 0.9414 -4.7077 3.9832 31 1 -0.0371 -5.5823 2.7680 32 1 0.5531 -7.0526 5.5694 33 1 1.6807 -9.1927 6.0158 34 1 3.7457 -8.8776 2.2997 35 1 1.9515 -6.7133 0.7364 36 1 3.5732 -6.2026 1.2945 37 1 2.1778 -4.2726 -0.9522 38 1 3.1578 -3.5544 0.4003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254599685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:32 Heat of formation + Delta-G solvation = 49.120538 kcal Electronic energy + Delta-G solvation = -21831.025666 eV Core-core repulsion = 18449.196778 eV Total energy + Delta-G solvation = -3381.828888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.36984 -40.71887 -38.93374 -36.74590 -35.71996 -32.84605 -32.25026 -30.28373 -28.28886 -27.16136 -25.64554 -25.02043 -23.86279 -22.50829 -21.56526 -20.53713 -19.12765 -18.96324 -18.80273 -17.70954 -17.05649 -16.22496 -16.14775 -15.52786 -14.74350 -14.62013 -14.07830 -13.83271 -13.71633 -13.35720 -13.10402 -13.01477 -12.30574 -12.11813 -11.79351 -11.74831 -11.57548 -11.50633 -11.34237 -11.32716 -11.11736 -10.93253 -10.70903 -10.22753 -10.00626 -9.63195 -9.47345 -9.25065 -8.87021 -8.50453 -8.14038 -6.49253 -4.21565 -0.36835 0.66034 1.14238 1.20071 2.97565 3.35986 3.38427 3.51862 3.82179 4.00059 4.22539 4.39686 4.48898 4.54406 4.63367 4.67968 4.95667 5.12752 5.20829 5.21271 5.40088 5.50316 5.51373 5.54334 5.67062 5.69561 5.71250 5.93795 6.00924 6.04657 6.12944 6.21025 6.28267 6.36610 6.42111 6.69717 6.84778 7.36904 7.45737 7.70357 8.05961 8.29347 8.73278 9.51459 10.90438 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.041158 B = 0.002877 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.135649 B = 9731.614515 C = 9960.943296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 1.071 2.929 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.597 4.597 8 H 0.051 0.949 9 C 0.019 3.981 10 C 0.003 3.997 11 N -0.481 5.481 12 C 0.051 3.949 13 H 0.061 0.939 14 C -0.082 4.082 15 C -0.032 4.032 16 C -0.109 4.109 17 C -0.057 4.057 18 C -0.051 4.051 19 N 0.033 4.967 20 O -0.166 6.166 21 O -0.165 6.165 22 C -0.045 4.045 23 C -0.088 4.088 24 C -0.073 4.073 25 C 0.008 3.992 26 H 0.272 0.728 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -14.193 8.432 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.636 4.636 8 H 0.070 0.930 9 C 0.000 4.000 10 C -0.126 4.126 11 N -0.204 5.204 12 C -0.058 4.058 13 H 0.079 0.921 14 C -0.119 4.119 15 C -0.032 4.032 16 C -0.127 4.127 17 C -0.076 4.076 18 C -0.134 4.134 19 N 0.551 4.449 20 O -0.381 6.381 21 O -0.380 6.380 22 C -0.064 4.064 23 C -0.089 4.089 24 C -0.110 4.110 25 C -0.120 4.120 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.886 -12.426 8.108 14.956 hybrid contribution 1.066 -1.653 0.573 2.049 sum 2.951 -14.079 8.681 16.801 Atomic orbital electron populations 1.70734 1.06870 1.30915 1.45613 1.25832 0.96513 1.02652 0.93227 0.83503 0.74498 0.74905 0.77104 1.21527 1.21323 1.21206 1.21962 0.94045 0.91264 1.56282 0.93048 1.20459 0.94509 0.92872 0.92135 1.24227 0.99873 0.86887 1.01588 1.68609 1.26553 1.16641 1.08566 1.22855 0.95025 0.94907 0.93053 0.92139 1.21242 1.00760 0.91831 0.98095 1.21215 0.93194 0.96282 0.92548 1.20669 1.00833 0.93795 0.97419 1.20903 0.92766 0.95345 0.98544 1.20866 1.04133 0.87996 1.00400 1.43591 0.99334 1.02127 0.99819 1.94521 1.68290 1.59646 1.15612 1.94541 1.30044 1.70793 1.42618 1.20405 0.98187 0.93114 0.94676 1.20704 0.96355 0.94025 0.97861 1.21187 1.02351 0.92427 0.95029 1.23951 0.95550 0.97062 0.95486 0.91751 0.93154 0.92191 0.91557 0.89732 0.87809 0.83627 0.82909 0.83185 0.88283 0.90083 0.91347 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.82 13.65 55.43 0.76 -25.06 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.07 23.90 29.90 -169.99 -5.08 18.82 16 4 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.60 -15.57 8.77 -34.44 -0.30 -15.87 16 8 H 0.05 1.35 7.81 -52.48 -0.41 0.94 16 9 C 0.02 0.45 3.09 -90.84 -0.28 0.16 16 10 C 0.00 0.06 7.17 -2.77 -0.02 0.04 16 11 N -0.48 -8.24 5.95 -228.67 -1.36 -9.60 16 12 C 0.05 0.71 2.29 -66.30 -0.15 0.56 16 13 H 0.06 0.90 7.80 -51.93 -0.40 0.49 16 14 C -0.08 -0.96 6.14 -26.85 -0.16 -1.13 16 15 C -0.03 -0.34 6.14 -104.20 -0.64 -0.98 16 16 C -0.11 -0.97 10.04 -39.53 -0.40 -1.36 16 17 C -0.06 -0.54 9.55 -39.63 -0.38 -0.91 16 18 C -0.05 -0.58 6.85 -79.99 -0.55 -1.13 16 19 N 0.03 0.43 4.45 33.94 0.15 0.58 16 20 O -0.17 -2.23 18.45 -29.46 -0.54 -2.77 16 21 O -0.16 -2.29 18.45 -29.46 -0.54 -2.83 16 22 C -0.04 -0.49 9.55 -39.53 -0.38 -0.87 16 23 C -0.09 -0.98 6.15 -104.05 -0.64 -1.62 16 24 C -0.07 -0.86 6.14 -26.69 -0.16 -1.02 16 25 C 0.01 0.15 7.19 -2.77 -0.02 0.13 16 26 H 0.27 7.66 7.04 -40.82 -0.29 7.37 16 27 H 0.05 1.26 7.61 -51.93 -0.40 0.86 16 28 H 0.06 1.24 7.76 -51.93 -0.40 0.84 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.26 8.08 -51.93 -0.42 0.84 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.15 1.18 7.62 -52.49 -0.40 0.78 16 34 H 0.15 1.48 7.60 -52.49 -0.40 1.08 16 35 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.10 7.77 -51.93 -0.40 0.70 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -28.39 324.50 -10.76 -39.15 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.85 Total: 0.30 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -4.18 Total: -23.47 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: -0.45 Total: -34.08 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -1.09 Total: -5.60 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.08 Total: 18.82 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.39 -10.76 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254599685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.270 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds