Wall clock time and date at job start Tue Mar 31 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47238 * 60.00536 * 3 2 1 6 6 H 1.48497 * 109.47223 * 300.00437 * 3 2 1 7 7 C 1.37882 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.53934 * 113.73027 * 276.72766 * 9 7 2 11 11 N 1.47963 * 86.17713 * 221.91765 * 10 9 7 12 12 C 1.46903 * 110.99829 * 137.58240 * 11 10 9 13 13 H 1.09004 * 110.72932 * 310.62975 * 12 11 10 14 14 C 1.54342 * 110.82312 * 74.03035 * 12 11 10 15 15 C 1.51370 * 105.17012 * 144.57368 * 14 12 11 16 16 C 1.38500 * 130.39219 * 162.81858 * 15 14 12 17 17 C 1.38105 * 120.21556 * 179.97438 * 16 15 14 18 18 C 1.38251 * 119.93404 * 359.97438 * 17 16 15 19 19 N 1.48020 * 120.03256 * 180.02562 * 18 17 16 20 20 O 1.21793 * 120.00177 * 359.97438 * 19 18 17 21 21 O 1.21805 * 120.00137 * 180.02562 * 19 18 17 22 22 C 1.38109 * 119.93729 * 0.02562 * 18 17 16 23 23 C 1.38216 * 109.75785 * 342.80891 * 15 14 12 24 24 C 1.51674 * 109.84198 * 0.16571 * 23 15 14 25 25 C 1.47965 * 90.76345 * 24.68968 * 11 10 9 26 26 H 0.97000 * 119.99705 * 180.02562 * 1 2 3 27 27 H 1.09004 * 112.93569 * 48.43182 * 9 7 2 28 28 H 1.08994 * 113.76041 * 336.23276 * 10 9 7 29 29 H 1.08994 * 113.76083 * 107.60394 * 10 9 7 30 30 H 1.08997 * 110.30703 * 263.49747 * 14 12 11 31 31 H 1.08997 * 110.30269 * 25.55255 * 14 12 11 32 32 H 1.07997 * 119.89200 * 0.02562 * 16 15 14 33 33 H 1.07994 * 120.03484 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.89462 * 179.97438 * 22 18 17 35 35 H 1.08995 * 110.25758 * 258.10466 * 24 23 15 36 36 H 1.08991 * 110.49790 * 135.84593 * 24 23 15 37 37 H 1.08994 * 113.75993 * 220.98968 * 25 11 10 38 38 H 1.08997 * 113.75697 * 89.62663 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 1.2126 6 1 1.8904 2.3965 -1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.7990 -2.9534 1.3990 11 7 1.2181 -4.3108 0.9854 12 6 1.9382 -4.9926 2.0692 13 1 2.7192 -4.3508 2.4770 14 6 0.9630 -5.4420 3.1780 15 6 1.5157 -6.7580 3.6820 16 6 1.2542 -7.4521 4.8517 17 6 1.8864 -8.6541 5.1027 18 6 2.7829 -9.1671 4.1837 19 7 3.4613 -10.4554 4.4503 20 8 3.2301 -11.0639 5.4797 21 8 4.2514 -10.9067 3.6405 22 6 3.0450 -8.4764 3.0168 23 6 2.4126 -7.2705 2.7638 24 6 2.5288 -6.3315 1.5783 25 6 2.1617 -3.7403 -0.0013 26 1 -0.4850 -0.8401 0.0004 27 1 0.4616 -2.5339 -0.7513 28 1 1.3965 -2.5374 2.2101 29 1 -0.2737 -2.8571 1.5668 30 1 0.9414 -4.7077 3.9832 31 1 -0.0371 -5.5823 2.7680 32 1 0.5531 -7.0526 5.5694 33 1 1.6807 -9.1927 6.0158 34 1 3.7457 -8.8776 2.2997 35 1 1.9515 -6.7133 0.7364 36 1 3.5732 -6.2026 1.2945 37 1 2.1778 -4.2726 -0.9522 38 1 3.1578 -3.5544 0.4003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254599685.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:31 Heat of formation + Delta-G solvation = 34.129965 kcal Electronic energy + Delta-G solvation = -21831.675706 eV Core-core repulsion = 18449.196778 eV Total energy + Delta-G solvation = -3382.478928 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.32796 -41.72660 -40.29429 -37.74282 -36.80103 -34.73935 -33.07059 -31.43511 -29.31956 -28.55815 -26.93084 -26.49028 -25.42937 -23.46961 -22.47480 -21.76350 -20.75530 -19.91279 -19.75774 -18.85676 -18.67422 -17.31327 -17.14129 -16.57292 -16.35663 -15.67390 -15.36553 -15.18365 -14.88258 -14.44026 -14.39284 -14.00024 -13.76960 -13.34477 -13.11340 -13.05477 -12.79504 -12.70273 -12.51498 -12.40461 -12.36157 -12.23827 -11.96653 -11.92796 -11.62628 -11.19688 -10.69077 -10.50955 -10.41210 -10.10102 -9.71709 -8.61083 -6.33288 -1.30123 -0.11077 0.22234 0.29461 1.55144 1.62362 1.78346 2.16914 2.56243 2.88936 2.96037 3.18455 3.32668 3.47168 3.62915 3.74207 3.85269 4.02410 4.07612 4.16936 4.31916 4.34962 4.47938 4.55081 4.62406 4.65563 4.66862 4.74057 4.77191 4.86166 4.87940 5.00189 5.02247 5.07682 5.20669 5.33671 5.44635 5.51066 6.06867 6.19096 6.23558 6.43149 6.63579 7.46719 8.78937 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.041158 B = 0.002877 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.135649 B = 9731.614515 C = 9960.943296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.027 4.027 3 Si 1.115 2.885 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.605 4.605 8 H 0.047 0.953 9 C -0.005 4.005 10 C 0.018 3.982 11 N -0.470 5.470 12 C 0.045 3.955 13 H 0.054 0.946 14 C -0.076 4.076 15 C -0.032 4.032 16 C -0.097 4.097 17 C -0.049 4.049 18 C -0.064 4.064 19 N 0.034 4.966 20 O -0.168 6.168 21 O -0.192 6.192 22 C -0.046 4.046 23 C -0.094 4.094 24 C -0.066 4.066 25 C 0.022 3.978 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.178 0.822 33 H 0.174 0.826 34 H 0.155 0.845 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 -14.709 9.840 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.226 4.226 3 Si 0.938 3.062 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.643 4.643 8 H 0.065 0.935 9 C -0.024 4.024 10 C -0.111 4.111 11 N -0.193 5.193 12 C -0.065 4.065 13 H 0.072 0.928 14 C -0.113 4.113 15 C -0.033 4.033 16 C -0.115 4.115 17 C -0.068 4.068 18 C -0.147 4.147 19 N 0.549 4.451 20 O -0.384 6.384 21 O -0.402 6.402 22 C -0.065 4.065 23 C -0.096 4.096 24 C -0.103 4.103 25 C -0.107 4.107 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.196 0.804 33 H 0.191 0.809 34 H 0.173 0.827 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.314 -12.982 9.488 16.245 hybrid contribution 0.918 -1.531 0.153 1.791 sum 3.231 -14.512 9.641 17.720 Atomic orbital electron populations 1.70848 1.07804 1.30306 1.48134 1.27136 0.96596 1.06181 0.92670 0.82938 0.74293 0.71646 0.77343 1.19776 1.20652 1.20841 1.22298 0.94047 0.92741 1.55185 0.93485 1.20506 0.94959 0.93643 0.93272 1.23893 0.99333 0.88506 0.99397 1.68533 1.26618 1.14841 1.09306 1.22900 0.95378 0.95416 0.92775 0.92759 1.21137 0.99922 0.92723 0.97550 1.21204 0.93075 0.95809 0.93222 1.20962 1.00507 0.92962 0.97059 1.21214 0.91545 0.95342 0.98674 1.21039 1.04959 0.87368 1.01310 1.43839 0.99164 1.02609 0.99529 1.94499 1.68145 1.60107 1.15663 1.94539 1.31124 1.71582 1.42937 1.20435 0.98271 0.93010 0.94817 1.20564 0.97077 0.94121 0.97807 1.21065 1.02613 0.91317 0.95309 1.23794 0.95110 0.95076 0.96700 0.92938 0.95965 0.92733 0.92194 0.88750 0.88076 0.80444 0.80859 0.82692 0.88562 0.89298 0.90141 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.25 13.65 21.45 0.29 -53.96 16 2 C -0.03 -1.44 5.46 84.66 0.46 -0.98 16 3 Si 1.11 47.88 29.90 68.60 2.05 49.93 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.60 -31.79 8.77 25.60 0.22 -31.56 16 8 H 0.05 2.45 7.81 -2.91 -0.02 2.43 16 9 C 0.00 -0.22 3.09 -10.90 -0.03 -0.25 16 10 C 0.02 0.72 7.17 86.40 0.62 1.34 16 11 N -0.47 -15.74 5.95 -877.39 -5.22 -20.96 16 12 C 0.04 1.17 2.29 45.83 0.10 1.27 16 13 H 0.05 1.52 7.80 -2.38 -0.02 1.51 16 14 C -0.08 -1.61 6.14 30.52 0.19 -1.42 16 15 C -0.03 -0.59 6.14 -19.59 -0.12 -0.71 16 16 C -0.10 -1.35 10.04 22.30 0.22 -1.13 16 17 C -0.05 -0.77 9.55 22.24 0.21 -0.56 16 18 C -0.06 -1.32 6.85 36.35 0.25 -1.07 16 19 N 0.03 0.84 4.45 -46.53 -0.21 0.64 16 20 O -0.17 -4.25 18.45 18.90 0.35 -3.90 16 21 O -0.19 -5.24 18.45 18.88 0.35 -4.90 16 22 C -0.05 -0.93 9.55 22.30 0.21 -0.71 16 23 C -0.09 -1.90 6.15 -19.50 -0.12 -2.02 16 24 C -0.07 -1.44 6.14 30.62 0.19 -1.25 16 25 C 0.02 0.81 7.19 86.40 0.62 1.43 16 26 H 0.26 15.20 7.04 -92.71 -0.65 14.55 16 27 H 0.02 1.15 7.61 -2.38 -0.02 1.14 16 28 H 0.05 2.24 7.76 -2.39 -0.02 2.23 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.10 2.23 8.08 -2.39 -0.02 2.22 16 32 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.17 2.02 7.62 -2.91 -0.02 1.99 16 34 H 0.16 2.87 7.60 -2.91 -0.02 2.85 16 35 H 0.10 2.18 8.08 -2.39 -0.02 2.16 16 36 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.06 2.26 7.77 -2.39 -0.02 2.24 16 Total: -1.00 -61.51 324.50 1.83 -59.67 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 1.19 Total: 11.11 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: 3.03 Total: -37.63 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -5.13 Total: -74.28 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.70 Total: -8.80 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.05 Total: 49.93 kcal Total: -61.51 1.83 -59.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254599685.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.805 kcal (2) G-P(sol) polarization free energy of solvation -61.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds