Wall clock time and date at job start Tue Mar 31 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 H 1.09006 * 109.47263 * 185.16204 * 3 2 1 5 5 C 1.50700 * 109.47379 * 305.16367 * 3 2 1 6 6 H 1.08001 * 120.00069 * 119.99916 * 5 3 2 7 7 C 1.37884 * 119.99592 * 299.99775 * 5 3 2 8 8 N 1.31504 * 120.00202 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99611 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47169 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46876 * 120.00047 * 9 7 5 12 12 H 1.48491 * 109.47439 * 240.00036 * 9 7 5 13 13 N 1.46896 * 109.47132 * 65.16440 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89597 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82063 * 14 13 3 16 16 C 1.38233 * 119.61690 * 94.73255 * 15 14 13 17 17 C 1.38625 * 119.15948 * 179.71404 * 16 15 14 18 18 C 1.38675 * 118.42240 * 0.54664 * 17 16 15 19 19 C 1.38186 * 119.15889 * 359.73272 * 18 17 16 20 20 C 1.50700 * 119.61489 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47409 * 184.97977 * 20 19 18 22 22 F 1.39893 * 109.47288 * 304.98435 * 20 19 18 23 23 F 1.39908 * 109.46886 * 64.98186 * 20 19 18 24 24 N 1.31855 * 119.62043 * 275.00030 * 15 14 13 25 25 H 1.09000 * 109.47219 * 294.84548 * 1 2 3 26 26 H 1.08999 * 109.47213 * 174.84609 * 1 2 3 27 27 H 1.09003 * 109.47011 * 54.84822 * 1 2 3 28 28 H 1.08999 * 109.47241 * 120.00316 * 2 1 3 29 29 H 1.08997 * 109.47017 * 240.00462 * 2 1 3 30 30 H 0.97001 * 120.00281 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99920 * 321.94239 * 13 3 2 32 32 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 33 33 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 34 34 H 1.07996 * 120.41677 * 359.97308 * 16 15 14 35 35 H 1.07999 * 120.79039 * 180.25375 * 17 16 15 36 36 H 1.07995 * 120.42370 * 179.75906 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0925 5 6 1.4360 2.1889 -1.1615 6 1 0.8268 3.0629 -0.9838 7 6 1.6611 1.7560 -2.4511 8 7 2.4024 0.6916 -2.6675 9 14 0.9119 2.6808 -3.8908 10 1 0.1257 3.8339 -3.3833 11 1 1.9944 3.1734 -4.7800 12 1 0.0204 1.7708 -4.6538 13 7 1.6548 2.0981 1.2569 14 6 2.6432 1.8366 2.3116 15 6 2.2832 2.6252 3.5443 16 6 1.5369 2.0286 4.5432 17 6 1.2162 2.7610 5.6757 18 6 1.6502 4.0755 5.7564 19 6 2.3876 4.6063 4.7152 20 6 2.8641 6.0339 4.7920 21 9 3.4853 6.3837 3.5883 22 9 1.7717 6.8787 5.0157 23 9 3.7777 6.1647 5.8435 24 7 2.6792 3.8780 3.6551 25 1 -0.3634 0.4318 0.9325 26 1 -0.3633 -1.0235 -0.0923 27 1 -0.3633 0.5917 -0.8403 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 2.5605 0.3869 -3.5747 31 1 0.7321 1.8104 1.5467 32 1 2.6481 0.7729 2.5493 33 1 3.6323 2.1359 1.9648 34 1 1.2114 1.0036 4.4444 35 1 0.6379 2.3197 6.4740 36 1 1.4154 4.6768 6.6222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:56 Heat of formation + Delta-G solvation = -115.843665 kcal Electronic energy + Delta-G solvation = -22725.467994 eV Core-core repulsion = 18794.628981 eV Total energy + Delta-G solvation = -3930.839013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.15272 -47.72208 -47.55284 -40.47006 -36.65243 -33.55907 -32.86895 -31.76108 -30.23254 -27.22253 -26.37456 -24.93620 -23.26909 -22.74675 -21.83976 -19.37658 -18.56283 -18.52839 -18.29268 -16.72262 -16.24708 -16.00888 -14.96908 -14.88676 -14.62452 -14.38396 -14.29135 -14.08062 -13.88982 -13.75926 -13.72214 -13.54499 -13.05503 -12.89409 -12.75007 -12.45312 -12.06865 -11.75392 -11.54078 -10.93080 -10.72607 -10.54177 -10.15001 -10.02605 -9.94364 -9.64817 -9.57797 -9.28699 -8.99708 -8.35118 -7.30842 -5.98137 -3.99104 0.62798 1.04092 2.44223 3.32694 3.36924 3.41203 3.47080 3.51419 3.88419 4.35687 4.43736 4.48897 4.59199 4.79962 4.83096 5.09581 5.33920 5.35344 5.43134 5.69098 5.85061 5.95225 6.11335 6.28549 6.31536 6.39849 6.52296 6.82147 7.20546 7.21501 7.47296 7.64745 7.72848 7.87738 8.23474 8.45730 8.56529 9.06592 9.64472 11.09044 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.004142 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.722050 B = 6758.559921 C = 7644.079610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.036 0.964 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.674 5.674 14 C 0.103 3.897 15 C 0.157 3.843 16 C -0.139 4.139 17 C -0.074 4.074 18 C -0.135 4.135 19 C 0.038 3.962 20 C 0.521 3.479 21 F -0.158 7.158 22 F -0.174 7.174 23 F -0.176 7.176 24 N -0.422 5.422 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.011 0.989 29 H 0.095 0.905 30 H 0.259 0.741 31 H 0.326 0.674 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.545 3.160 18.286 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.525 4.525 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.305 5.305 14 C -0.027 4.027 15 C 0.018 3.982 16 C -0.160 4.160 17 C -0.100 4.100 18 C -0.155 4.155 19 C -0.102 4.102 20 C 0.466 3.534 21 F -0.139 7.139 22 F -0.156 7.156 23 F -0.158 7.158 24 N -0.131 5.131 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.144 0.856 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.684 4.084 17.261 17.750 hybrid contribution -1.010 -0.652 0.099 1.207 sum -1.694 3.432 17.360 17.777 Atomic orbital electron populations 1.21603 0.97655 0.98739 1.00783 1.22128 0.95045 1.01013 1.00389 1.19270 0.96264 0.88539 0.85003 0.94610 1.21077 1.30461 1.11456 0.89529 0.91932 1.24895 0.95535 0.95166 0.98718 1.69877 1.39096 1.24020 1.20639 0.86509 0.78976 0.79880 0.82485 1.19744 1.21151 1.21265 1.60791 1.03184 1.63507 1.03004 1.20876 0.99172 0.94350 0.88269 1.21568 0.92033 0.89037 0.95565 1.22303 0.97662 1.01965 0.94058 1.21546 0.97380 0.93136 0.97916 1.21713 0.97912 0.96867 0.99055 1.20908 1.01204 0.94134 0.93978 1.17935 0.75251 0.85934 0.74274 1.93267 1.82791 1.92948 1.44911 1.93212 1.54496 1.73311 1.94537 1.93212 1.67856 1.96481 1.58207 1.67091 1.18698 1.06559 1.20725 0.95505 0.95708 0.91138 0.97057 0.88707 0.93155 0.85554 0.94049 0.89320 0.83815 0.83718 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.40 37.16 0.35 -2.30 16 2 C -0.15 -3.25 5.51 -26.73 -0.15 -3.40 16 3 C 0.22 5.18 2.33 -68.87 -0.16 5.02 16 4 H 0.04 0.95 7.70 -51.93 -0.40 0.55 16 5 C -0.49 -13.03 7.25 -34.44 -0.25 -13.28 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.90 -24.93 11.38 55.43 0.63 -24.30 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.67 -13.83 6.19 -109.22 -0.68 -14.50 16 14 C 0.10 1.78 5.82 -4.98 -0.03 1.75 16 15 C 0.16 2.40 6.34 -82.59 -0.52 1.88 16 16 C -0.14 -1.61 9.72 -39.44 -0.38 -1.99 16 17 C -0.07 -0.70 10.18 -39.28 -0.40 -1.10 16 18 C -0.13 -1.44 9.61 -39.44 -0.38 -1.82 16 19 C 0.04 0.53 6.26 -82.59 -0.52 0.01 16 20 C 0.52 7.11 3.32 36.01 0.12 7.23 16 21 F -0.16 -2.52 16.85 2.25 0.04 -2.49 16 22 F -0.17 -2.24 17.16 2.25 0.04 -2.20 16 23 F -0.18 -2.20 17.28 2.25 0.04 -2.16 16 24 N -0.42 -7.07 9.65 -5.74 -0.06 -7.12 16 25 H 0.03 0.48 6.63 -51.93 -0.34 0.13 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.60 6.85 -51.93 -0.36 1.24 16 28 H 0.01 0.22 7.50 -51.93 -0.39 -0.17 16 29 H 0.09 2.40 6.22 -51.93 -0.32 2.08 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.33 6.29 6.69 -39.29 -0.26 6.03 16 32 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 33 H 0.09 1.65 7.93 -51.93 -0.41 1.23 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -29.12 315.80 -6.77 -35.89 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.11 Total: 2.34 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.42 Total: -6.54 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.10 Total: -45.93 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 0.12 Total: -6.85 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.12 -6.77 -35.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.950 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds