Wall clock time and date at job start Tue Mar 31 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 H 1.09006 * 109.47263 * 185.16204 * 3 2 1 5 5 C 1.50700 * 109.47379 * 305.16367 * 3 2 1 6 6 H 1.08001 * 120.00069 * 119.99916 * 5 3 2 7 7 C 1.37884 * 119.99592 * 299.99775 * 5 3 2 8 8 N 1.31504 * 120.00202 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99611 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47169 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46876 * 120.00047 * 9 7 5 12 12 H 1.48491 * 109.47439 * 240.00036 * 9 7 5 13 13 N 1.46896 * 109.47132 * 65.16440 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89597 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82063 * 14 13 3 16 16 C 1.38233 * 119.61690 * 94.73255 * 15 14 13 17 17 C 1.38625 * 119.15948 * 179.71404 * 16 15 14 18 18 C 1.38675 * 118.42240 * 0.54664 * 17 16 15 19 19 C 1.38186 * 119.15889 * 359.73272 * 18 17 16 20 20 C 1.50700 * 119.61489 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47409 * 184.97977 * 20 19 18 22 22 F 1.39893 * 109.47288 * 304.98435 * 20 19 18 23 23 F 1.39908 * 109.46886 * 64.98186 * 20 19 18 24 24 N 1.31855 * 119.62043 * 275.00030 * 15 14 13 25 25 H 1.09000 * 109.47219 * 294.84548 * 1 2 3 26 26 H 1.08999 * 109.47213 * 174.84609 * 1 2 3 27 27 H 1.09003 * 109.47011 * 54.84822 * 1 2 3 28 28 H 1.08999 * 109.47241 * 120.00316 * 2 1 3 29 29 H 1.08997 * 109.47017 * 240.00462 * 2 1 3 30 30 H 0.97001 * 120.00281 * 179.97438 * 8 7 5 31 31 H 1.00902 * 110.99920 * 321.94239 * 13 3 2 32 32 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 33 33 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 34 34 H 1.07996 * 120.41677 * 359.97308 * 16 15 14 35 35 H 1.07999 * 120.79039 * 180.25375 * 17 16 15 36 36 H 1.07995 * 120.42370 * 179.75906 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0925 5 6 1.4360 2.1889 -1.1615 6 1 0.8268 3.0629 -0.9838 7 6 1.6611 1.7560 -2.4511 8 7 2.4024 0.6916 -2.6675 9 14 0.9119 2.6808 -3.8908 10 1 0.1257 3.8339 -3.3833 11 1 1.9944 3.1734 -4.7800 12 1 0.0204 1.7708 -4.6538 13 7 1.6548 2.0981 1.2569 14 6 2.6432 1.8366 2.3116 15 6 2.2832 2.6252 3.5443 16 6 1.5369 2.0286 4.5432 17 6 1.2162 2.7610 5.6757 18 6 1.6502 4.0755 5.7564 19 6 2.3876 4.6063 4.7152 20 6 2.8641 6.0339 4.7920 21 9 3.4853 6.3837 3.5883 22 9 1.7717 6.8787 5.0157 23 9 3.7777 6.1647 5.8435 24 7 2.6792 3.8780 3.6551 25 1 -0.3634 0.4318 0.9325 26 1 -0.3633 -1.0235 -0.0923 27 1 -0.3633 0.5917 -0.8403 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 2.5605 0.3869 -3.5747 31 1 0.7321 1.8104 1.5467 32 1 2.6481 0.7729 2.5493 33 1 3.6323 2.1359 1.9648 34 1 1.2114 1.0036 4.4444 35 1 0.6379 2.3197 6.4740 36 1 1.4154 4.6768 6.6222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163447.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:56 Heat of formation + Delta-G solvation = -134.160597 kcal Electronic energy + Delta-G solvation = -22726.262276 eV Core-core repulsion = 18794.628981 eV Total energy + Delta-G solvation = -3931.633295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.21585 -48.74215 -48.68516 -41.45167 -38.34312 -35.06549 -33.77554 -33.44798 -31.74019 -28.78878 -27.62091 -26.40968 -25.05166 -23.70228 -22.98956 -21.20739 -19.61051 -19.57281 -19.38162 -18.25964 -17.48849 -17.05754 -16.79874 -16.32858 -15.77531 -15.62431 -15.47774 -15.13699 -15.08958 -14.95561 -14.84694 -14.84082 -14.50252 -14.30143 -14.10023 -13.77464 -13.61428 -13.17183 -12.91340 -12.78571 -12.48832 -12.42488 -11.90949 -11.67196 -11.40409 -11.04110 -10.98717 -10.60784 -10.42501 -10.29676 -8.94002 -8.05332 -6.12723 -0.29613 0.15857 1.40617 1.42317 1.44131 1.54919 2.37750 2.47464 2.48690 2.86942 3.23728 3.32284 3.41450 3.70794 3.91069 3.98898 4.01301 4.28441 4.37354 4.56045 4.58723 4.66385 4.73845 4.83864 4.96053 5.04231 5.13175 5.36772 5.45100 5.49805 5.73869 5.78353 5.84591 6.33071 6.65887 6.72685 6.85698 6.99137 7.54632 8.99948 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.004142 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.722050 B = 6758.559921 C = 7644.079610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.138 4.138 3 C 0.223 3.777 4 H -0.002 1.002 5 C -0.498 4.498 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.683 5.683 14 C 0.109 3.891 15 C 0.129 3.871 16 C -0.130 4.130 17 C -0.058 4.058 18 C -0.122 4.122 19 C 0.012 3.988 20 C 0.522 3.478 21 F -0.179 7.179 22 F -0.170 7.170 23 F -0.170 7.170 24 N -0.470 5.470 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.259 0.741 31 H 0.335 0.665 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.172 0.828 35 H 0.195 0.805 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 2.515 20.807 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.177 4.177 3 C 0.115 3.885 4 H 0.016 0.984 5 C -0.537 4.537 6 H 0.065 0.935 7 C -0.182 4.182 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.021 4.021 15 C -0.010 4.010 16 C -0.150 4.150 17 C -0.083 4.083 18 C -0.142 4.142 19 C -0.127 4.127 20 C 0.467 3.533 21 F -0.160 7.160 22 F -0.151 7.151 23 F -0.151 7.151 24 N -0.179 5.179 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.154 0.846 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.189 0.811 35 H 0.212 0.788 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.545 3.445 19.800 20.258 hybrid contribution -0.408 -0.413 -0.570 0.814 sum -2.953 3.031 19.230 19.690 Atomic orbital electron populations 1.21486 0.95862 0.99681 1.00890 1.21943 0.96548 0.99365 0.99877 1.18980 0.93693 0.89760 0.86094 0.98442 1.21280 1.30261 1.11167 0.91002 0.93536 1.25524 0.95976 0.95892 1.00832 1.69995 1.39946 1.24981 1.20977 0.85658 0.78233 0.78829 0.79813 1.19813 1.21192 1.20391 1.60568 1.04388 1.63590 1.02984 1.20753 0.96859 0.96041 0.88416 1.21293 0.94660 0.88997 0.96036 1.22572 0.95860 1.03195 0.93344 1.22105 0.96077 0.92126 0.97994 1.22169 0.95652 0.97775 0.98586 1.21046 1.02972 0.93889 0.94795 1.18023 0.75269 0.86333 0.73700 1.93217 1.83264 1.93176 1.46377 1.93213 1.54193 1.73280 1.94445 1.93217 1.67713 1.96498 1.57706 1.66861 1.20453 1.07782 1.22809 0.92938 0.93710 0.94007 0.94648 0.92026 0.93185 0.84564 0.91889 0.92224 0.81062 0.78822 0.80736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 9.40 71.98 0.68 -4.09 16 2 C -0.14 -6.10 5.51 30.59 0.17 -5.93 16 3 C 0.22 10.96 2.33 44.17 0.10 11.06 16 4 H 0.00 -0.13 7.70 -2.38 -0.02 -0.15 16 5 C -0.50 -27.41 7.25 25.60 0.19 -27.23 16 6 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.02 0.88 5.28 84.66 0.45 1.33 16 8 N -0.92 -52.30 11.38 21.45 0.24 -52.06 16 9 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 10 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 N -0.68 -28.28 6.19 -499.47 -3.09 -31.37 16 14 C 0.11 3.77 5.82 85.56 0.50 4.27 16 15 C 0.13 3.83 6.34 42.55 0.27 4.10 16 16 C -0.13 -2.52 9.72 22.36 0.22 -2.30 16 17 C -0.06 -0.81 10.18 22.47 0.23 -0.58 16 18 C -0.12 -2.15 9.61 22.36 0.21 -1.94 16 19 C 0.01 0.33 6.26 42.54 0.27 0.59 16 20 C 0.52 14.01 3.32 71.24 0.24 14.25 16 21 F -0.18 -5.92 16.85 44.97 0.76 -5.16 16 22 F -0.17 -4.20 17.16 44.97 0.77 -3.43 16 23 F -0.17 -4.10 17.28 44.97 0.78 -3.32 16 24 N -0.47 -15.77 9.65 -172.08 -1.66 -17.43 16 25 H 0.05 1.75 6.63 -2.39 -0.02 1.74 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.87 6.85 -2.39 -0.02 1.85 16 28 H 0.03 1.36 7.50 -2.39 -0.02 1.35 16 29 H 0.06 3.16 6.22 -2.39 -0.01 3.15 16 30 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.34 12.57 6.69 -89.69 -0.60 11.97 16 32 H 0.06 1.86 7.44 -2.39 -0.02 1.85 16 33 H 0.06 2.35 7.93 -2.38 -0.02 2.34 16 34 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.19 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -66.61 315.80 3.85 -62.76 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.52 Total: 9.96 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 3.51 Total: -6.46 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -4.51 Total: -100.86 kcal Atomic # 9 Polarization: -14.22 SS G_CDS: 2.31 Total: -11.91 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -66.61 3.85 -62.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163447.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.405 kcal (2) G-P(sol) polarization free energy of solvation -66.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds