Wall clock time and date at job start Tue Mar 31 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86803 * 120.00301 * 2 1 4 4 H 1.48501 * 109.46852 * 269.99443 * 3 2 1 5 5 H 1.48496 * 109.47062 * 29.99046 * 3 2 1 6 6 H 1.48497 * 109.47338 * 149.99473 * 3 2 1 7 7 C 1.38636 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99516 * 180.02562 * 7 2 1 9 9 O 1.34807 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.35783 * 117.00083 * 185.39488 * 9 7 2 11 11 C 1.38899 * 119.99820 * 5.92473 * 10 9 7 12 12 C 1.38013 * 120.00063 * 179.97438 * 11 10 9 13 13 C 1.38911 * 119.99524 * 0.02562 * 12 11 10 14 14 N 1.40026 * 119.99507 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00466 * 33.66832 * 14 13 12 16 16 O 1.21594 * 119.99910 * 5.25658 * 15 14 13 17 17 N 1.34771 * 120.00460 * 185.26082 * 15 14 13 18 18 C 1.46498 * 120.00380 * 179.97438 * 17 15 14 19 19 C 1.54632 * 111.03723 * 267.02105 * 18 17 15 20 20 C 1.51105 * 104.72554 * 217.32921 * 19 18 17 21 21 C 1.30528 * 111.10294 * 16.44061 * 20 19 18 22 22 C 1.51101 * 111.10485 * 359.97438 * 21 20 19 23 23 C 1.38904 * 119.99914 * 0.27937 * 13 12 11 24 24 C 1.38009 * 120.00352 * 359.45777 * 23 13 12 25 25 H 0.97003 * 119.99740 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00011 * 359.97438 * 11 10 9 27 27 H 1.08000 * 119.99771 * 179.97438 * 12 11 10 28 28 H 0.97006 * 120.00148 * 213.66861 * 14 13 12 29 29 H 0.97003 * 120.00169 * 359.97438 * 17 15 14 30 30 H 1.09001 * 110.91262 * 31.03452 * 18 17 15 31 31 H 1.08996 * 110.38809 * 336.14722 * 19 18 17 32 32 H 1.09009 * 110.38625 * 98.52205 * 19 18 17 33 33 H 1.07997 * 124.44781 * 196.45205 * 20 19 18 34 34 H 1.07997 * 124.44735 * 180.02562 * 21 20 19 35 35 H 1.09000 * 110.38638 * 224.75385 * 22 21 20 36 36 H 1.09001 * 110.48548 * 102.42487 * 22 21 20 37 37 H 1.08008 * 119.99957 * 179.70054 * 23 13 12 38 38 H 1.07998 * 120.00291 * 180.23417 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4975 2.0463 -1.4001 5 1 1.4473 2.6527 0.6998 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0697 -3.5042 0.1148 11 6 3.4367 -3.4265 0.3482 12 6 4.1835 -4.5812 0.4649 13 6 3.5681 -5.8211 0.3484 14 7 4.3259 -6.9926 0.4663 15 6 5.3825 -7.0306 1.3021 16 8 5.6209 -6.0817 2.0241 17 7 6.1748 -8.1202 1.3377 18 6 7.3237 -8.1613 2.2458 19 6 8.6088 -7.6735 1.5375 20 6 9.7064 -8.5584 2.0811 21 6 9.2120 -9.6194 2.6587 22 6 7.7022 -9.6187 2.5971 23 6 2.2021 -5.8986 0.1087 24 6 1.4543 -4.7440 -0.0026 25 1 -0.4850 0.8401 -0.0004 26 1 3.9152 -2.4625 0.4383 27 1 5.2465 -4.5208 0.6459 28 1 4.0904 -7.7770 -0.0537 29 1 5.9845 -8.8774 0.7619 30 1 7.1282 -7.5802 3.1470 31 1 8.5189 -7.7993 0.4586 32 1 8.8054 -6.6300 1.7839 33 1 10.7614 -8.3414 2.0023 34 1 9.8042 -10.3954 3.1206 35 1 7.2826 -9.8981 3.5635 36 1 7.3518 -10.2990 1.8209 37 1 1.7243 -6.8626 0.0133 38 1 0.3916 -4.8043 -0.1852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326433934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:40 Heat of formation + Delta-G solvation = -3.403906 kcal Electronic energy + Delta-G solvation = -21503.836172 eV Core-core repulsion = 18119.729653 eV Total energy + Delta-G solvation = -3384.106519 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47722 -39.09927 -38.32666 -36.47638 -34.07253 -33.63407 -32.11305 -30.15582 -28.67057 -28.48145 -27.16383 -25.19827 -22.59554 -21.86407 -20.88632 -20.50220 -19.14791 -18.49267 -17.84388 -17.35766 -16.64546 -16.15753 -15.71609 -15.14241 -14.46838 -14.35189 -14.05186 -13.59216 -13.51909 -13.25185 -13.04604 -12.81473 -12.52728 -12.46540 -12.20256 -11.74719 -11.65300 -11.51229 -11.47554 -11.45111 -10.96835 -10.74116 -10.40591 -10.00541 -9.57959 -9.27586 -9.22331 -9.13848 -8.64359 -8.15768 -6.86035 -6.40387 -3.97743 1.92028 2.18817 2.27947 2.70930 3.15734 3.18102 3.22986 3.34340 4.01513 4.17991 4.32717 4.41901 4.63260 4.85818 4.96157 5.13829 5.15346 5.29393 5.34890 5.42578 5.60102 5.69790 5.72307 5.73630 5.83161 6.18047 6.18427 6.21698 6.32156 6.45171 6.52571 6.71857 6.78154 7.00116 7.15068 7.23746 7.36911 7.48684 7.83401 8.04402 8.07402 8.70203 9.05660 9.75863 10.77774 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.028846 B = 0.002942 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.433003 B = 9516.003873 C =10333.937920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.144 3.856 11 C -0.217 4.217 12 C -0.065 4.065 13 C 0.056 3.944 14 N -0.675 5.675 15 C 0.699 3.301 16 O -0.573 6.573 17 N -0.740 5.740 18 C 0.160 3.840 19 C -0.118 4.118 20 C -0.157 4.157 21 C -0.171 4.171 22 C -0.106 4.106 23 C -0.096 4.096 24 C -0.177 4.177 25 H 0.269 0.731 26 H 0.130 0.870 27 H 0.121 0.879 28 H 0.397 0.603 29 H 0.394 0.606 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.618 -19.193 1.360 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.465 4.465 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.090 3.910 11 C -0.237 4.237 12 C -0.085 4.085 13 C -0.037 4.037 14 N -0.322 5.322 15 C 0.399 3.601 16 O -0.449 6.449 17 N -0.396 5.396 18 C 0.054 3.946 19 C -0.156 4.156 20 C -0.175 4.175 21 C -0.189 4.189 22 C -0.144 4.144 23 C -0.117 4.117 24 C -0.197 4.197 25 H 0.079 0.921 26 H 0.148 0.852 27 H 0.139 0.861 28 H 0.231 0.769 29 H 0.228 0.772 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.411 -18.084 2.014 23.211 hybrid contribution 0.420 -0.031 -0.486 0.643 sum 14.831 -18.115 1.529 23.461 Atomic orbital electron populations 1.70048 1.05929 1.27584 1.46355 1.25277 0.95841 0.98803 0.96639 0.85722 0.78986 0.80135 0.78672 1.19921 1.20297 1.19154 1.21317 0.91803 0.80884 1.52542 0.89104 1.83987 1.34158 1.11406 1.78610 1.19405 0.90397 0.88077 0.93105 1.21090 0.94130 0.98660 1.09811 1.20731 0.99566 0.90485 0.97696 1.17018 0.89915 0.84687 1.12071 1.42327 1.30172 1.14876 1.44868 1.15967 0.80047 0.83223 0.80817 1.90957 1.73626 1.35884 1.44443 1.45081 1.30179 1.18815 1.45502 1.21601 0.83887 0.96127 0.93006 1.21861 0.92970 1.00152 1.00642 1.23285 0.99162 0.96328 0.98705 1.23142 0.95591 0.99007 1.01171 1.21610 0.94157 0.96189 1.02462 1.20306 0.91167 0.97479 1.02713 1.19968 0.99730 0.89534 1.10451 0.92089 0.85239 0.86126 0.76900 0.77184 0.87846 0.90212 0.90367 0.85722 0.85618 0.90379 0.90243 0.86802 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.39 -11.08 9.44 30.88 0.29 -10.79 16 8 H 0.09 2.42 5.29 -52.48 -0.28 2.14 16 9 O -0.18 -5.15 9.75 0.01 0.00 -5.15 16 10 C 0.14 3.55 6.65 -39.09 -0.26 3.29 16 11 C -0.22 -5.00 9.13 -39.42 -0.36 -5.36 16 12 C -0.06 -1.34 8.65 -39.42 -0.34 -1.68 16 13 C 0.06 1.01 6.28 -83.62 -0.52 0.49 16 14 N -0.68 -9.36 5.35 -14.18 -0.08 -9.43 16 15 C 0.70 10.27 8.30 -86.92 -0.72 9.55 16 16 O -0.57 -11.07 13.69 5.28 0.07 -10.99 16 17 N -0.74 -7.42 5.16 -57.00 -0.29 -7.71 16 18 C 0.16 1.55 3.53 -66.22 -0.23 1.32 16 19 C -0.12 -1.10 6.55 -26.83 -0.18 -1.27 16 20 C -0.16 -1.20 10.78 -35.70 -0.38 -1.58 16 21 C -0.17 -1.18 10.78 -35.70 -0.38 -1.56 16 22 C -0.11 -0.74 6.54 -26.83 -0.18 -0.92 16 23 C -0.10 -1.70 9.95 -39.42 -0.39 -2.09 16 24 C -0.18 -3.73 9.99 -39.42 -0.39 -4.12 16 25 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.13 3.01 5.71 -52.49 -0.30 2.71 16 27 H 0.12 2.49 6.43 -52.49 -0.34 2.15 16 28 H 0.40 3.87 8.83 -40.82 -0.36 3.51 16 29 H 0.39 2.65 8.45 -40.82 -0.35 2.31 16 30 H 0.10 1.24 7.54 -51.93 -0.39 0.85 16 31 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.45 7.80 -51.93 -0.41 0.05 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -34.03 325.50 -8.32 -42.34 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.51 Total: 8.75 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -4.15 Total: -13.76 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.39 Total: -42.02 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.07 Total: -16.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.03 -8.32 -42.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326433934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.941 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds